genome.fa.s46.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  36  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7173675--7173731	27	2.1	28	83	3	71	71	8	0	19	1.11
7173900--7173956	1	57.0	1	75	0	51	3	0	8	87	0.64
7173900--7173955	20	2.9	19	86	5	85	3	0	8	87	0.65
7173963--7174376	41	10.0	41	87	4	582	37	23	15	23	1.93
7173963--7174376	166	2.5	163	89	3	614	37	23	15	23	1.93
7174637--7174728	43	2.1	44	78	11	100	34	16	11	36	1.85
7176046--7176090	18	2.5	19	79	13	60	8	17	0	73	1.08
7176046--7176084	19	2.1	19	90	9	62	7	15	0	76	0.99
7176059--7176093	16	2.3	15	86	13	54	8	14	0	77	0.99
7180015--7180418	59	6.7	60	82	4	467	33	13	7	45	1.72
7180455--7180508	18	3.1	18	76	12	58	77	1	5	14	1.03
7180455--7180520	17	4.2	17	67	18	54	77	1	6	15	1.04
7180541--7180584	4	10.5	4	80	9	52	77	4	0	18	0.94
7180541--7180576	13	2.8	13	95	0	63	77	2	0	19	0.88
7180541--7180588	17	2.9	16	87	9	69	79	4	0	16	0.89
7180904--7180942	20	2.0	20	85	10	53	35	15	20	28	1.93
7181417--7181464	18	2.6	19	83	12	64	62	8	8	20	1.49
7181526--7181558	11	3.1	11	91	4	50	69	0	0	30	0.88
7181525--7181588	14	4.4	15	79	15	64	65	3	0	31	1.08
7181394--7181558	66	2.5	66	72	18	150	67	4	4	22	1.29
7181519--7181584	23	2.8	23	78	17	64	68	3	0	28	1.05
7181526--7181588	29	2.3	27	82	15	69	65	3	0	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7182056--7182113	19	3.0	19	78	11	64	29	0	3	67	1.07
7183705--7183735	2	15.5	2	93	0	53	45	0	3	51	1.17
7184252--7184545	149	2.0	149	90	1	464	32	13	16	37	1.88
7186924--7187024	50	2.0	50	94	0	175	36	17	17	27	1.93
7197613--7197685	28	2.5	29	72	14	69	52	0	1	46	1.09
7197612--7197688	29	2.7	28	77	4	82	49	0	1	49	1.09
7198129--7198170	17	2.5	17	88	7	59	64	0	0	35	0.94
7198131--7198184	25	2.2	24	80	3	63	66	0	0	33	0.92
7201979--7202036	12	5.2	12	80	16	63	50	0	0	50	1.00
7201970--7202043	31	2.4	33	80	13	102	50	0	0	50	1.00
7202266--7202305	18	2.2	19	90	4	64	40	0	0	60	0.97
7202374--7202403	7	4.3	7	95	0	51	73	0	3	23	0.98
7202576--7202641	32	2.2	31	86	8	91	53	6	0	40	1.26
7203080--7203291	103	2.1	103	99	0	415	27	8	19	44	1.79
7203424--7203469	14	3.3	14	76	11	58	67	0	0	32	0.91
7240306--7240352	15	3.2	15	81	6	51	63	23	0	12	1.28
7240304--7240358	25	2.2	25	81	12	69	63	20	0	16	1.31
7240340--7240389	20	2.4	21	86	6	75	58	22	4	16	1.55
7242021--7242077	11	4.8	11	74	16	51	52	1	0	45	1.11
7245887--7245943	11	4.8	11	74	16	51	52	1	0	45	1.11
7254628--7254661	11	3.2	11	83	8	52	73	2	0	23	0.97
7254684--7254815	72	1.9	67	83	13	169	48	2	0	49	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7254769--7254826	8	7.1	8	73	11	55	51	1	0	46	1.11
7254699--7254818	33	3.4	33	76	10	114	49	2	0	48	1.14
7255411--7255485	22	3.7	21	74	15	61	60	1	2	36	1.20
7255491--7255608	31	3.8	32	72	9	104	47	0	1	50	1.17
7261872--7261902	14	2.1	15	94	5	55	58	0	0	41	0.98
7272032--7272056	4	6.2	4	100	0	50	24	24	0	52	1.48
7278828--7278867	20	2.0	21	85	5	55	57	15	12	15	1.66
7280232--7280260	14	2.1	14	100	0	58	41	20	0	37	1.53
7286837--7286881	2	22.5	2	100	0	90	51	0	48	0	1.00
7287720--7287752	15	2.1	17	88	11	52	48	0	0	51	1.00
7295843--7295889	24	2.0	24	86	0	67	27	2	4	65	1.22
7296614--7296646	15	2.1	16	88	5	50	27	3	3	66	1.21
7298326--7298351	2	13.0	2	100	0	52	50	0	0	50	1.00
7298401--7298441	3	13.7	3	100	0	82	34	0	0	65	0.93
7299124--7299170	23	2.0	23	88	8	69	23	2	2	72	1.06
7299124--7299172	22	2.2	22	85	10	64	24	2	2	71	1.07
7299713--7299768	8	7.4	7	79	16	51	25	1	5	67	1.21
7299772--7299805	16	2.1	16	88	0	50	58	0	0	41	0.98
7299710--7299917	110	1.9	110	98	0	407	35	1	4	57	1.31
7299823--7299878	8	7.4	7	79	16	51	25	1	5	67	1.21
7299721--7299952	110	2.1	108	86	7	301	35	3	6	54	1.43
7300376--7300421	5	9.0	5	82	17	51	23	2	0	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7300391--7300441	13	3.9	13	76	7	50	29	3	1	64	1.22
7300283--7300475	107	1.8	103	93	4	332	36	4	2	56	1.32
7300723--7300758	13	2.8	13	82	0	54	88	8	0	2	0.59
7303872--7303909	14	2.6	14	91	8	58	65	0	5	28	1.14
7303898--7304007	58	1.9	58	92	0	184	46	6	10	37	1.63
7303991--7304023	15	2.3	15	89	5	50	63	3	0	33	1.10
7303933--7304084	72	2.1	70	84	8	200	50	4	9	36	1.55
7303890--7304129	130	1.8	130	86	1	347	48	4	10	36	1.57
7304000--7304130	59	2.3	59	81	4	160	48	3	9	38	1.55
7304036--7304179	58	2.5	57	81	11	159	48	5	9	36	1.60
7307995--7308059	28	2.2	30	78	10	82	75	1	15	7	1.10
7308031--7308097	18	3.9	17	72	18	59	79	0	13	7	0.94
7308030--7308100	17	4.2	17	76	20	69	76	0	15	8	1.02
7308857--7308981	64	2.0	64	80	3	144	44	11	17	27	1.83
7309370--7309594	46	4.9	46	87	4	321	39	8	13	39	1.75
7309462--7309779	118	2.8	116	84	8	393	38	8	13	39	1.75
7309416--7309758	164	2.1	162	88	4	501	38	8	13	39	1.74
7309367--7309803	210	2.1	209	91	4	697	38	8	13	39	1.75
7309489--7309824	46	7.3	46	86	3	366	38	9	13	38	1.78
7309811--7310019	38	5.3	38	64	19	106	38	10	14	36	1.80
7309811--7310082	79	3.4	79	92	0	427	38	10	14	36	1.80
7309926--7309981	20	2.7	21	76	13	62	41	10	8	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7310024--7310063	21	1.9	21	89	0	62	40	7	12	40	1.71
7310529--7310657	41	3.1	42	76	8	111	20	17	18	44	1.87
7312267--7312484	57	3.8	58	89	3	323	45	6	11	36	1.67
7312267--7312484	115	1.9	117	87	3	325	45	6	11	36	1.67
7317603--7317635	14	2.4	14	90	10	50	57	3	0	39	1.14
7323570--7323599	10	2.8	11	90	10	53	20	0	0	80	0.72
7325598--7325623	2	13.0	2	100	0	52	50	0	0	50	1.00
7327155--7327194	14	2.9	14	88	7	55	60	7	0	32	1.25
7331551--7331638	37	2.4	37	74	11	90	47	14	10	27	1.76
7332654--7332702	24	2.1	23	88	11	73	28	2	0	69	1.00
7333632--7333681	22	2.4	20	83	6	55	32	6	0	62	1.20
7334284--7334344	28	2.2	28	81	0	68	59	3	1	36	1.24
7335174--7335224	27	1.9	27	84	11	70	33	0	0	66	0.92
7335175--7335255	30	2.7	31	77	7	78	33	1	1	64	1.10
7335182--7335261	21	3.9	21	76	14	78	33	1	1	63	1.10
7335202--7335301	15	6.6	14	73	20	60	36	1	1	62	1.09
7335174--7335280	41	2.6	41	76	15	114	35	0	0	62	1.08
7335243--7335306	18	3.7	18	80	16	73	37	0	0	62	0.95
7335247--7335378	48	2.8	47	73	16	119	42	2	0	54	1.18
7335480--7335512	16	2.0	17	94	5	59	63	0	0	36	0.95
7348143--7348193	20	2.6	19	75	9	57	47	0	0	52	1.00
7348319--7348362	21	2.2	20	83	4	52	36	4	6	52	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7357370--7357415	21	2.2	21	84	0	56	63	2	8	26	1.35
7357691--7357722	3	10.7	3	100	0	64	31	0	0	68	0.90
7362404--7362447	20	2.3	19	92	4	70	34	0	0	65	0.93
7362404--7362449	10	4.7	10	81	5	58	36	0	0	63	0.95
7362466--7362524	22	2.6	23	82	12	77	52	1	1	44	1.21
7363267--7363313	10	4.7	10	78	19	53	36	0	0	63	0.94
7363668--7363712	23	2.0	23	86	8	65	37	6	4	51	1.49
7363810--7363839	15	2.1	14	93	6	51	30	6	0	63	1.20
7363793--7363836	23	2.0	23	82	13	56	29	6	2	61	1.34
7363793--7363839	24	2.0	24	87	8	69	29	6	2	61	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125