genome.fa.s46.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  56  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11146753--11146784	14	2.3	14	100	0	64	50	15	0	34	1.45
11147224--11147257	18	1.9	17	88	5	50	32	11	0	55	1.36
11148825--11148849	11	2.3	11	100	0	50	12	16	0	72	1.13
11149149--11149188	15	2.7	15	81	14	55	30	0	0	70	0.88
11150494--11150528	2	17.5	2	100	0	70	0	48	0	51	1.00
11150528--11150559	2	16.0	2	100	0	64	50	0	0	50	1.00
11151511--11151591	37	2.2	38	93	4	139	49	12	7	30	1.68
11151699--11151768	30	2.3	32	80	7	83	55	1	0	42	1.08
11151764--11151788	12	2.1	12	100	0	50	68	0	0	32	0.90
11166898--11166987	15	5.9	15	67	21	53	45	3	2	48	1.31
11167135--11167174	21	1.9	21	90	10	64	50	10	5	35	1.58
11168939--11168968	14	2.1	14	93	0	51	43	0	0	56	0.99
11169646--11169678	17	2.0	16	94	5	57	3	6	6	84	0.84
11169748--11169784	5	7.2	5	87	6	56	56	0	2	40	1.13
11169738--11169784	15	2.9	16	84	6	60	53	2	4	40	1.32
11169748--11169800	26	2.0	26	82	13	65	56	1	1	39	1.21
11170740--11170799	29	2.0	29	81	9	68	50	1	13	35	1.52
11172031--11172066	16	2.2	17	90	5	56	30	2	11	55	1.49
11172243--11172297	26	2.1	26	86	6	76	69	3	3	23	1.21
11173174--11173234	9	6.8	9	84	0	68	67	18	0	14	1.24
11173157--11173234	6	13.0	6	90	0	84	70	14	0	15	1.17
11173361--11173403	22	2.0	22	85	0	59	30	25	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11180417--11180455	20	2.0	20	100	0	78	61	23	5	10	1.48
11187263--11187306	23	1.9	23	100	0	88	40	4	11	43	1.61
11187796--11187844	23	2.1	23	92	0	80	48	4	8	38	1.52
11189728--11189839	55	2.0	55	100	0	224	34	16	12	36	1.86
11189728--11189811	26	3.1	26	65	31	68	34	15	14	35	1.88
11189813--11189857	19	2.3	20	78	21	51	31	20	6	42	1.77
11195175--11195214	21	1.9	21	89	0	62	27	5	17	50	1.67
11195538--11195668	59	2.2	59	81	1	154	32	12	9	45	1.76
11195189--11195709	183	2.9	179	75	7	492	32	13	13	40	1.84
11195562--11195784	123	1.8	121	84	7	308	35	10	12	40	1.78
11202848--11202887	20	2.1	19	85	4	53	52	12	12	22	1.72
11205631--11205681	24	2.2	24	82	10	61	33	3	39	23	1.73
11205736--11205771	17	2.1	17	89	0	54	22	0	2	75	0.94
11208701--11208742	18	2.3	18	84	8	50	9	14	0	76	1.02
11209075--11209113	7	5.6	7	84	9	53	12	2	0	84	0.72
11209082--11209112	13	2.4	13	94	0	53	12	3	0	83	0.75
11209081--11209135	23	2.4	22	79	11	56	14	7	0	78	0.96
11212427--11212470	3	14.7	3	100	0	88	68	0	0	31	0.90
11214188--11214236	21	2.5	20	77	9	55	53	8	16	22	1.69
11215376--11215427	22	2.3	22	78	21	54	9	7	21	61	1.51
11216106--11216138	8	4.0	8	96	4	57	24	0	0	75	0.80
11220203--11220243	17	2.4	17	100	0	82	19	9	31	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11227471--11227537	35	1.9	35	93	0	116	43	13	13	29	1.82
11231913--11232042	66	2.0	66	82	0	161	19	23	13	44	1.85
11232402--11232439	9	4.1	9	96	3	67	34	0	0	65	0.93
11233851--11233908	17	3.3	18	77	15	50	15	3	3	77	1.04
11233866--11233908	23	1.9	23	90	4	70	16	0	4	79	0.90
11235372--11235508	66	2.1	66	83	5	170	26	6	18	48	1.72
11236403--11236445	19	2.3	19	87	0	59	34	2	9	53	1.46
11236466--11236505	20	2.0	20	85	0	53	37	5	10	47	1.59
11236488--11236531	20	2.2	20	83	4	52	40	9	9	40	1.68
11238859--11238896	17	2.2	17	86	9	51	50	0	10	39	1.37
11243118--11243178	26	2.3	26	97	0	113	52	6	8	32	1.57
11243638--11243697	22	2.7	22	94	0	102	41	20	15	23	1.89
11244798--11244838	3	13.7	3	100	0	82	31	0	0	68	0.90
11245785--11245819	9	4.1	9	89	10	56	22	8	0	68	1.16
11246494--11246521	9	3.1	9	100	0	56	0	32	35	32	1.58
11248248--11248272	2	12.5	2	100	0	50	48	0	0	52	1.00
11249791--11249839	25	1.9	26	87	4	73	30	18	6	44	1.74
11249848--11249888	16	2.6	17	81	11	52	36	4	7	51	1.51
11254358--11254493	31	4.5	31	79	8	136	34	5	11	47	1.64
11254518--11254589	28	2.5	30	78	17	89	48	6	6	37	1.57
11256509--11256576	20	3.5	19	80	6	73	19	7	23	50	1.72
11256509--11256591	39	2.1	40	86	2	114	22	6	22	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11257888--11257956	36	1.9	36	87	0	102	33	14	18	33	1.91
11259429--11259502	19	3.7	19	81	10	94	33	0	8	58	1.28
11259448--11259486	11	3.5	11	96	3	69	30	0	7	61	1.24
11261282--11261407	55	2.3	55	79	4	128	45	9	18	26	1.80
11264370--11264419	19	2.6	19	87	6	66	80	10	8	2	0.99
11266787--11266833	20	2.3	20	79	17	53	2	14	2	80	0.89
11266797--11266861	14	4.6	14	73	16	53	3	20	0	76	0.91
11266773--11266848	33	2.3	35	73	15	81	6	19	1	72	1.14
11266807--11266883	35	2.1	37	81	11	88	7	18	0	74	1.06
11266798--11266884	28	3.2	26	78	15	70	6	18	0	74	1.03
11267072--11267105	15	2.2	16	89	5	52	8	8	5	76	1.15
11268238--11268640	198	2.0	200	88	2	605	30	10	20	38	1.87
11272253--11272348	19	5.6	18	71	20	71	11	0	40	47	1.39
11272316--11272361	18	2.6	18	89	0	65	21	2	26	50	1.60
11272334--11272396	30	2.1	30	90	0	99	20	3	26	49	1.64
11272404--11272465	19	3.3	19	74	0	61	9	0	41	48	1.36
11272553--11272612	33	1.9	30	86	10	84	18	0	31	50	1.47
11274044--11274443	145	2.8	144	81	3	446	38	12	15	33	1.85
11274044--11274459	144	2.9	145	77	5	398	38	12	15	33	1.85
11274222--11274504	144	2.0	143	83	2	354	40	12	13	32	1.83
11276427--11276478	20	2.6	20	78	0	59	21	11	25	42	1.86
11276482--11276583	20	5.2	20	77	4	93	20	4	24	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11277346--11277457	56	2.0	56	87	6	165	58	10	13	16	1.62
11280252--11280334	34	2.4	34	80	4	96	43	13	14	28	1.83
11281700--11281757	24	2.4	23	81	13	64	60	1	0	37	1.07
11290865--11292184	238	5.6	237	80	7	1297	35	11	12	40	1.80
11291986--11292408	186	2.3	186	85	6	554	32	12	14	40	1.83
11293159--11293303	28	5.4	28	80	5	142	23	5	26	44	1.75
11293265--11293303	12	3.2	12	78	7	51	25	7	25	41	1.82
11293264--11293311	25	1.9	25	95	0	87	20	6	31	41	1.77
11296497--11296563	35	1.9	35	93	0	116	34	16	13	35	1.88
11296816--11297109	126	2.3	124	79	4	286	35	14	12	37	1.84
11296942--11297285	178	1.9	178	82	8	432	36	15	12	36	1.84
11300931--11300996	20	3.4	20	73	19	59	40	1	6	51	1.36
11301224--11301274	21	2.4	22	74	12	61	45	1	7	45	1.44
11301346--11301382	20	1.9	18	89	10	56	56	0	0	43	0.99
11301359--11301426	26	2.6	25	76	15	84	47	0	2	50	1.16
11301664--11301708	17	2.7	18	76	13	51	62	2	0	35	1.08
11301969--11302006	19	2.1	17	90	9	58	50	0	0	50	1.00
11301906--11302204	164	1.8	163	83	7	401	49	2	4	43	1.35
11302325--11302373	22	2.3	22	82	3	55	28	8	4	59	1.45
11311369--11311429	29	2.2	29	82	5	81	40	3	9	45	1.53
11314337--11314361	11	2.3	11	100	0	50	72	12	8	8	1.29
11316705--11316756	24	2.3	22	83	9	61	73	3	7	15	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11317331--11317370	18	2.3	17	86	4	53	72	0	10	17	1.11
11317556--11317596	18	2.3	18	82	0	55	70	4	12	12	1.31
11317617--11317665	20	2.4	19	80	12	53	48	10	14	26	1.75
11321386--11321429	17	2.5	17	77	3	52	65	4	4	25	1.30
11321398--11321445	15	3.1	15	79	11	53	70	2	4	22	1.15
11321787--11321826	20	2.0	19	85	9	53	77	0	5	17	0.94
11322856--11322917	9	6.7	9	72	20	56	40	3	8	48	1.49
11322858--11322925	18	4.1	18	73	19	67	41	2	8	47	1.50
11323274--11323304	15	2.1	15	93	0	53	51	0	0	48	1.00
11328291--11328319	15	2.0	15	93	6	51	6	0	44	48	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125