genome.fa.s46.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  8  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084066--1084102	18	2.1	17	90	5	56	32	0	0	67	0.91
1085428--1085453	9	2.9	9	100	0	52	42	11	0	46	1.40
1087749--1088747	49	20.5	49	78	7	919	42	20	9	27	1.83
1087769--1088754	147	6.8	146	82	4	1035	42	20	9	27	1.83
1087754--1088754	293	3.4	293	84	5	1165	42	20	8	27	1.82
1088994--1089024	3	10.7	3	93	6	55	29	0	0	70	0.87
1089502--1089541	20	2.0	20	95	0	71	42	25	22	10	1.84
1089791--1089826	12	3.0	12	95	0	63	13	44	33	8	1.74
1089945--1089978	1	34.0	1	90	0	50	2	0	2	94	0.38
1089961--1090589	160	4.0	158	94	1	1057	28	13	17	40	1.87
1089961--1090589	316	2.0	316	93	2	1075	28	13	17	40	1.87
1091720--1091745	10	2.6	10	100	0	52	7	0	0	92	0.39
1104132--1104166	13	2.7	13	86	0	52	82	0	17	0	0.66
1104170--1104204	3	12.0	3	87	6	54	65	0	2	31	1.07
1112644--1112693	20	2.5	20	93	0	82	64	10	14	12	1.51
1114202--1114284	41	2.0	41	83	4	105	46	14	14	24	1.81
1116818--1116853	16	2.3	16	90	4	56	50	8	2	38	1.47
1135396--1135425	14	2.1	14	93	0	51	46	3	0	50	1.18
1144373--1144409	4	9.8	4	88	5	51	24	2	0	72	0.97
1144374--1144404	14	2.1	15	94	5	55	25	3	0	70	1.02
1144374--1144408	18	1.9	18	94	0	61	25	2	0	71	1.00
1144450--1144517	33	2.1	33	88	5	102	54	4	13	27	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144481--1144989	64	7.7	64	80	9	519	49	5	10	33	1.61
1144457--1144985	130	4.0	124	82	7	504	50	5	10	33	1.60
1148184--1148217	15	2.3	15	89	0	50	23	14	2	58	1.50
1155399--1155423	10	2.5	10	100	0	50	92	0	0	8	0.40
1155491--1155580	46	2.0	46	86	4	128	47	12	18	21	1.81
1156373--1156805	86	5.0	86	75	8	373	22	19	13	43	1.87
1156375--1156782	172	2.4	172	83	5	479	23	19	13	43	1.86
1158174--1158229	4	13.8	4	81	7	51	28	1	3	66	1.19
1158269--1158334	33	2.0	34	88	5	100	53	1	13	31	1.49
1158303--1158754	67	6.8	65	84	7	475	50	5	12	32	1.63
1158303--1158753	199	2.3	197	81	6	520	50	5	12	31	1.63
1158303--1158753	198	2.3	197	81	7	520	50	5	12	31	1.63
1159576--1159612	3	12.3	3	94	0	65	67	2	0	29	1.04
1159835--1159980	64	2.3	64	85	2	195	42	14	26	16	1.86
1159900--1160483	118	4.9	118	77	6	525	42	15	23	18	1.88
1159903--1160435	236	2.2	236	82	3	595	43	15	22	18	1.87
1165221--1165257	19	1.9	19	94	0	65	81	2	2	13	0.92
1165496--1165599	31	3.3	31	79	1	118	45	19	3	31	1.68
1166111--1166139	3	9.7	3	100	0	58	34	0	31	34	1.58
1166138--1166187	3	16.7	3	95	0	91	64	0	2	34	1.05
1167064--1167105	22	2.0	21	86	13	59	40	4	19	35	1.72
1167843--1168003	3	54.3	3	77	16	149	30	3	3	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1167954--1167994	16	2.7	16	88	7	59	29	2	0	68	1.03
1167968--1168011	5	8.6	5	85	9	54	22	0	2	75	0.92
1171643--1171689	2	23.5	2	86	0	58	48	2	4	44	1.34
1179264--1179293	13	2.3	13	94	0	51	56	10	13	20	1.65
1182142--1182230	44	2.0	44	91	0	142	38	12	13	35	1.82
1190011--1190048	17	2.2	18	86	13	53	26	0	7	65	1.19
1205164--1205224	16	3.7	16	78	6	50	52	4	0	42	1.23
1206088--1206118	15	2.1	15	100	0	62	54	12	12	19	1.70
1209020--1209050	2	15.5	2	100	0	62	51	0	0	48	1.00
1213413--1213467	13	4.1	13	81	9	65	29	3	0	67	1.08
1213423--1213470	23	2.1	23	88	7	71	31	4	0	64	1.12
1222755--1222809	27	2.0	27	82	6	67	69	5	0	25	1.10
1223026--1223079	22	2.6	20	76	5	54	59	5	7	27	1.47
1224332--1224411	27	2.9	27	78	14	83	68	8	1	21	1.23
1224420--1224459	21	1.9	21	94	0	71	77	2	0	20	0.88
1224389--1224455	32	2.1	32	83	8	84	73	2	2	20	1.10
1224438--1224479	13	3.2	13	78	15	50	66	4	2	26	1.23
1224675--1224724	25	2.0	26	92	4	84	38	4	2	56	1.30
1224675--1224724	26	2.0	25	88	4	73	38	4	2	56	1.30
1224883--1224940	25	2.3	24	82	11	71	22	6	0	70	1.10
1224908--1224943	19	1.9	18	88	5	54	27	2	0	69	1.02
1224908--1224961	20	2.8	19	82	2	54	31	1	1	64	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1225015--1225056	9	4.6	9	84	3	57	28	2	2	66	1.16
1225072--1225119	22	2.2	22	84	0	60	25	2	2	70	1.09
1225072--1225119	23	2.1	22	84	3	60	25	2	2	70	1.09
1225570--1225655	24	3.5	24	74	13	68	56	0	6	36	1.26
1225581--1225660	18	4.7	18	73	21	57	57	0	5	37	1.21
1225735--1225781	9	5.2	9	79	7	51	61	0	0	38	0.96
1225778--1225825	14	3.4	14	85	2	60	56	2	0	41	1.11
1226543--1226628	43	2.0	43	88	0	127	32	10	23	33	1.89
1228341--1228403	28	2.3	26	82	12	74	46	4	3	46	1.40
1229768--1229793	12	2.2	12	100	0	52	46	0	0	53	1.00
1234002--1234073	34	2.1	34	89	2	108	44	13	9	31	1.77
1234009--1234087	34	2.3	34	80	2	86	41	17	8	31	1.80
1237204--1237248	14	3.3	14	81	6	56	46	0	2	51	1.13
1237204--1237248	13	3.3	13	84	6	54	46	0	2	51	1.13
1237219--1237304	44	1.9	43	83	9	109	52	0	2	45	1.13
1237455--1237497	12	3.5	12	87	3	50	53	0	2	44	1.13
1237624--1237656	14	2.4	14	90	5	50	57	12	0	30	1.35
1239873--1239897	11	2.3	11	100	0	50	0	16	68	16	1.22
1240038--1240091	23	2.4	23	90	6	85	48	0	0	51	1.00
1240392--1240427	9	4.2	9	89	10	58	41	0	0	58	0.98
1240703--1240754	26	1.9	28	84	7	72	32	0	7	59	1.26
1240848--1240885	7	5.3	7	93	6	67	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240848--1240885	15	2.6	15	95	4	69	60	0	0	39	0.97
1240844--1240885	22	1.9	22	100	0	84	57	0	0	42	0.99
1244826--1244917	18	5.3	18	74	7	82	34	31	5	28	1.80
1244816--1244922	36	3.1	34	78	10	112	34	31	4	28	1.78
1246195--1246327	52	2.6	52	76	2	133	18	32	22	26	1.97
1246195--1246367	26	6.7	26	76	5	118	20	31	21	26	1.98
1246422--1246666	3	81.7	3	92	0	301	32	8	0	58	1.28
1260838--1260907	35	2.0	35	85	0	95	35	10	17	37	1.83
1263914--1263986	25	2.9	25	74	8	76	46	21	8	23	1.78
1264692--1264879	64	2.9	63	69	12	150	41	11	13	33	1.80
1265346--1265467	63	1.9	63	81	8	149	43	9	14	31	1.78
1264821--1266087	555	2.3	556	85	4	1704	40	10	11	36	1.77
1265766--1265889	64	1.9	67	81	8	157	46	8	8	36	1.65
1265757--1265990	62	3.7	62	70	16	174	44	10	8	37	1.68
1266801--1266825	13	1.9	13	100	0	50	44	0	0	56	0.99
1268519--1268558	21	1.9	21	89	0	62	25	10	22	42	1.84
1278468--1278813	191	1.8	187	82	3	442	41	10	14	34	1.79
1278660--1279969	558	2.4	553	84	5	1656	40	11	11	36	1.78
1281099--1281123	13	1.9	13	100	0	50	44	0	0	56	0.99
1289263--1289321	22	2.6	23	75	2	66	55	0	1	42	1.09
1293360--1293413	9	5.5	10	85	14	53	29	0	7	62	1.22
1293365--1293509	16	8.8	16	69	25	72	30	0	4	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1293417--1293506	4	21.5	4	72	18	60	30	0	3	66	1.07
1293417--1293469	21	2.6	19	76	11	52	26	0	3	69	1.05
1293963--1294021	31	1.9	31	82	6	75	27	16	20	35	1.94
1294449--1294496	17	2.9	16	87	9	69	16	0	4	79	0.89
1294461--1294496	13	2.8	13	95	0	63	19	0	2	77	0.88
1294453--1294496	4	10.5	4	80	9	52	18	0	4	77	0.94
1294525--1294570	21	2.2	21	88	7	67	13	6	2	78	1.04
1294518--1294606	5	16.8	5	69	19	56	14	7	2	75	1.13
1298561--1298593	14	2.4	14	90	10	50	75	3	12	9	1.14
1298561--1298594	15	2.4	14	90	5	50	76	2	11	8	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125