genome.fa.s46.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  37  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7364595--7364633	18	2.2	18	86	9	53	30	0	0	69	0.89
7364595--7364641	19	2.5	20	79	10	62	34	0	0	65	0.93
7364727--7364797	36	2.0	36	88	0	106	45	7	2	45	1.45
7366890--7366943	20	2.8	20	72	13	58	48	0	0	51	1.00
7366994--7367060	13	5.2	13	71	14	50	31	0	0	68	0.90
7367447--7367487	19	2.0	21	90	9	68	2	17	4	75	1.08
7370125--7370163	12	3.2	12	85	7	60	35	0	0	64	0.94
7372237--7372425	94	2.0	95	95	1	344	23	26	22	28	1.99
7375899--7375965	31	2.1	31	86	8	91	52	0	0	47	1.00
7375920--7375965	14	3.8	12	81	13	58	54	0	0	45	0.99
7375908--7375965	6	9.7	6	75	14	57	51	0	0	48	1.00
7375899--7375965	11	5.9	11	79	16	66	52	0	0	47	1.00
7376667--7376709	9	4.3	9	81	18	50	41	0	0	58	0.98
7378212--7378244	4	8.2	4	93	0	57	51	21	0	27	1.48
7384450--7384518	25	2.6	27	73	13	72	17	8	49	24	1.75
7389037--7389111	18	4.5	17	70	17	59	64	0	0	36	0.94
7389058--7389122	26	2.5	27	81	16	84	67	0	0	32	0.91
7389813--7389847	18	2.0	18	88	5	54	37	0	2	60	1.12
7398008--7398157	73	2.0	74	93	5	257	41	12	12	34	1.80
7399720--7399781	16	4.1	16	78	12	60	35	0	0	64	0.94
7399742--7399797	13	4.1	13	77	15	51	42	0	0	57	0.99
7400214--7400239	13	2.0	13	100	0	52	23	7	46	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7400657--7400769	26	4.6	23	70	16	75	61	1	0	35	1.12
7400663--7400714	26	2.0	25	88	3	77	61	1	1	34	1.18
7400709--7400760	15	3.5	15	82	12	63	65	1	0	32	1.04
7400709--7400769	29	2.1	29	81	6	70	65	1	0	32	1.02
7401607--7401664	26	2.2	26	75	0	62	39	3	5	51	1.41
7405210--7405254	11	3.9	11	85	8	54	62	0	4	33	1.15
7410845--7410895	24	2.1	24	85	7	68	54	7	17	19	1.67
7411020--7411063	22	2.0	22	90	0	70	45	13	9	31	1.75
7411033--7411075	22	2.0	22	81	9	52	53	9	6	30	1.59
7421248--7421277	9	3.3	9	95	0	51	40	0	43	16	1.48
7425278--7425314	15	2.3	17	81	13	51	59	0	0	40	0.97
7430976--7431020	20	2.3	19	77	11	54	53	0	0	46	1.00
7430932--7431006	27	2.9	27	69	18	70	52	0	0	48	1.00
7430939--7431016	23	3.2	23	69	30	56	48	0	0	51	1.00
7431789--7431857	29	2.4	31	81	16	85	42	1	2	53	1.24
7442206--7442250	20	2.3	19	77	11	54	53	0	0	46	1.00
7442168--7442246	23	3.2	23	69	28	56	48	0	0	51	1.00
7442501--7442552	19	2.8	18	80	8	59	50	0	1	48	1.12
7445942--7445987	24	1.9	24	82	8	58	34	4	0	60	1.16
7448174--7448221	24	2.0	24	88	11	73	43	2	0	54	1.12
7448336--7448436	30	3.4	29	80	11	107	52	1	7	37	1.42
7448647--7448677	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7451888--7451931	12	3.6	12	81	6	52	2	15	2	79	0.93
7452098--7452146	2	24.5	2	89	8	73	53	2	0	44	1.12
7452091--7452138	16	3.1	16	88	8	64	56	4	0	39	1.19
7458374--7458457	42	2.0	42	95	0	150	27	10	20	41	1.85
7461341--7461378	19	2.0	19	94	0	67	60	5	18	15	1.53
7468180--7469509	680	1.9	684	93	2	2280	31	21	19	26	1.97
7472135--7472197	25	2.6	24	73	7	56	26	1	6	65	1.26
7472234--7472272	20	2.0	20	85	10	53	69	2	2	25	1.14
7473013--7473055	19	2.3	19	87	0	59	67	2	0	30	1.03
7473649--7473762	30	3.8	30	79	0	102	20	58	11	9	1.60
7473709--7473766	18	3.2	18	73	9	64	17	60	6	15	1.56
7473752--7473798	18	2.6	18	82	0	58	31	51	8	8	1.63
7473836--7473873	18	2.1	18	90	0	58	26	57	7	7	1.54
7473852--7473940	30	3.0	30	81	0	88	28	56	6	8	1.56
7473912--7473957	18	2.6	18	82	0	56	28	63	0	8	1.24
7477982--7478038	23	2.5	23	100	0	114	31	14	10	43	1.79
7479831--7479885	25	2.3	24	84	6	67	69	3	3	23	1.21
7479820--7479904	22	3.8	22	75	15	66	61	4	4	29	1.37
7479881--7479941	27	2.2	28	85	2	79	54	1	8	36	1.40
7479929--7479995	33	2.1	33	82	2	82	59	5	0	34	1.22
7479976--7480040	21	3.2	21	72	14	66	67	7	1	23	1.25
7479986--7480049	18	3.5	17	75	12	56	64	4	1	29	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7479986--7480049	21	3.4	18	76	8	58	64	4	1	29	1.23
7481223--7481264	16	2.7	16	81	3	50	21	2	4	71	1.16
7482132--7482419	160	1.8	155	93	4	479	42	6	6	44	1.56
7483556--7483607	23	2.2	25	83	13	65	48	0	1	50	1.12
7484191--7484228	18	2.2	17	90	4	58	55	0	2	42	1.14
7485080--7485122	20	2.2	20	87	8	61	34	0	0	65	0.93
7485086--7485124	10	3.9	10	82	0	51	33	0	0	66	0.92
7488043--7488103	24	2.5	24	94	2	104	42	11	1	44	1.50
7490226--7490262	19	1.9	19	94	0	65	62	5	16	16	1.51
7497037--7498366	681	1.9	683	93	1	2301	31	21	19	27	1.97
7499731--7499759	5	5.8	5	100	0	58	82	17	0	0	0.66
7500914--7500946	8	4.1	8	96	0	57	57	0	0	42	0.98
7501011--7501071	25	2.5	24	74	7	61	27	0	4	67	1.11
7501106--7501143	10	3.9	10	82	6	51	65	0	0	34	0.93
7501108--7501151	19	2.2	20	88	11	65	65	0	0	34	0.93
7501238--7501302	23	2.7	24	77	13	71	56	12	3	27	1.50
7501514--7501547	18	1.9	18	88	5	52	55	2	0	41	1.15
7501856--7501880	10	2.5	10	100	0	50	92	0	8	0	0.40
7502152--7502196	13	3.2	13	81	12	54	28	0	0	71	0.87
7502790--7502837	22	2.2	22	82	14	55	47	0	2	50	1.12
7503502--7503566	33	2.0	33	84	0	85	20	60	13	6	1.55
7503559--7503605	18	2.6	18	86	0	67	29	53	8	8	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7503649--7503686	18	2.1	18	90	0	58	26	57	7	7	1.54
7503725--7503770	18	2.6	18	82	0	56	28	63	0	8	1.24
7504542--7504600	28	2.0	30	81	12	70	38	3	1	55	1.26
7509648--7509710	22	2.8	23	76	9	67	65	4	3	26	1.28
7509648--7509728	23	3.6	23	78	9	69	61	4	3	29	1.34
7509791--7509822	7	4.4	7	96	4	55	46	12	0	40	1.42
7509790--7509830	7	5.5	8	85	8	52	51	9	0	39	1.35
7509826--7509894	22	3.3	21	74	9	61	65	10	1	23	1.31
7510938--7511029	37	2.6	34	75	23	91	50	2	1	46	1.20
7510951--7511024	31	2.3	32	80	11	82	50	1	1	47	1.18
7511027--7511095	24	3.0	23	71	23	63	34	0	2	62	1.10
7511077--7511118	16	2.7	16	81	3	50	21	2	4	71	1.16
7511999--7512030	13	2.6	13	90	9	50	68	0	0	31	0.90
7513849--7513900	23	2.2	25	83	13	65	50	0	0	50	1.00
7513891--7513928	18	2.2	17	90	4	58	55	0	2	42	1.14
7517666--7517692	13	2.1	13	100	0	54	66	0	0	33	0.92
7524894--7525123	115	2.0	115	95	0	415	36	23	20	19	1.95
7525564--7525615	11	4.5	11	75	20	52	30	1	0	67	1.02
7525573--7525618	24	1.9	24	86	8	67	34	2	0	63	1.07
7526399--7526451	25	2.2	24	83	16	65	24	3	3	67	1.23
7528256--7528303	24	2.0	24	84	8	62	43	0	0	56	0.99
7529171--7529208	12	3.0	13	85	14	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7529396--7529430	13	2.7	13	90	0	52	25	0	8	65	1.21
7530458--7530501	21	2.1	21	83	8	54	59	0	2	38	1.10
7531072--7531108	19	1.9	19	89	10	58	37	0	0	62	0.96
7531701--7531746	19	2.4	18	82	10	56	32	6	2	58	1.36
7532565--7532589	3	8.3	3	100	0	50	32	68	0	0	0.90
7534907--7534957	26	1.9	26	88	4	75	41	0	7	50	1.31
7536726--7536778	26	2.0	27	88	3	81	33	13	1	50	1.52
7536967--7537032	19	3.6	18	71	19	55	34	1	0	63	1.04
7536969--7537032	9	6.9	9	73	19	60	35	1	0	62	1.05
7536969--7537032	29	2.3	28	89	5	94	35	1	0	62	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125