genome.fa.s46.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  51  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10204854--10205047	87	2.2	87	83	0	235	21	24	19	35	1.96
10204649--10205084	196	2.2	196	81	2	489	21	21	19	37	1.94
10205026--10205071	24	1.9	24	90	0	74	26	23	19	30	1.98
10205381--10205414	17	1.9	18	94	5	61	64	2	0	32	1.08
10206824--10206981	31	5.0	30	76	12	124	46	31	1	21	1.60
10206828--10206986	45	3.4	49	79	6	159	47	30	1	20	1.58
10206833--10206996	16	10.6	15	75	12	120	45	31	1	21	1.59
10206997--10207029	14	2.3	15	89	5	50	57	36	0	6	1.23
10207005--10207058	14	3.7	14	78	9	54	55	29	0	14	1.40
10208640--10208716	38	2.0	38	94	0	136	20	12	23	42	1.87
10209273--10209301	15	2.0	15	93	6	51	34	0	6	58	1.25
10209427--10209466	18	2.2	18	95	0	71	30	0	2	67	1.04
10214362--10214404	22	2.0	22	86	9	61	79	0	2	18	0.85
10228445--10228666	121	1.8	120	82	6	288	44	9	8	37	1.69
10230209--10230237	14	2.0	15	93	6	51	13	17	0	68	1.20
10231078--10231508	216	2.0	216	99	0	844	33	11	27	27	1.91
10235337--10235369	17	1.9	17	88	11	50	39	0	6	54	1.25
10235990--10236043	21	2.6	21	79	5	56	48	20	14	16	1.81
10239490--10239521	16	2.0	17	88	11	50	37	9	9	43	1.69
10250295--10250337	21	2.1	20	91	4	68	60	2	0	37	1.10
10251327--10251355	2	14.5	2	100	0	58	48	0	0	51	1.00
10251606--10251676	26	2.8	25	81	8	90	52	1	1	45	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10251650--10251733	18	4.9	18	72	13	54	53	0	1	45	1.08
10251930--10251986	29	2.0	28	83	10	71	56	0	1	42	1.10
10252602--10252644	22	2.0	20	82	8	50	30	2	9	58	1.42
10253395--10253423	14	2.0	15	93	6	51	34	0	0	65	0.93
10254549--10254604	29	1.9	29	82	7	69	48	3	0	48	1.19
10255977--10256033	4	14.5	4	75	10	55	24	5	0	70	1.08
10255964--10256029	31	2.2	30	86	8	89	25	6	0	68	1.13
10256077--10256224	57	2.6	57	82	7	174	50	7	6	36	1.56
10257129--10257192	24	2.7	24	87	0	92	45	4	14	35	1.65
10257149--10257217	14	5.2	14	72	13	65	43	5	14	36	1.70
10257925--10257958	17	2.0	17	94	0	59	29	14	11	44	1.81
10257998--10258030	17	1.9	17	93	0	57	15	12	15	57	1.65
10258053--10258166	36	3.1	36	81	8	131	29	13	11	45	1.78
10258058--10258178	37	3.3	35	80	7	116	32	13	12	42	1.81
10263697--10263909	101	2.1	101	94	0	372	31	8	13	46	1.73
10264457--10264500	22	2.0	23	82	13	56	31	4	2	61	1.28
10264532--10264666	58	2.3	58	83	10	177	48	9	3	37	1.54
10264798--10264831	14	2.4	14	95	0	59	35	5	14	44	1.70
10270015--10270069	27	2.0	27	100	0	110	36	7	7	49	1.58
10271803--10272087	141	2.0	141	100	0	570	38	36	10	14	1.80
10281069--10281112	17	2.5	18	81	3	54	18	20	0	61	1.35
10281603--10281690	45	2.0	44	84	8	115	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10282239--10282267	12	2.5	12	94	5	51	34	0	0	65	0.93
10296787--10296820	10	3.3	10	87	4	50	20	2	0	76	0.92
10297181--10297626	202	2.2	202	84	3	558	34	10	7	47	1.66
10298919--10298952	15	2.3	15	90	10	52	23	0	2	73	0.97
10299296--10299488	84	2.3	84	85	0	251	44	16	13	25	1.85
10299590--10299643	22	2.5	22	81	3	65	31	7	18	42	1.78
10299491--10299742	125	2.0	126	85	2	337	33	13	15	38	1.86
10299650--10299900	96	2.6	96	79	3	247	35	13	14	36	1.86
10300175--10300236	23	2.7	23	85	5	90	32	22	19	25	1.97
10306106--10306137	16	1.9	16	93	6	55	3	0	9	87	0.64
10306103--10306136	18	1.9	18	94	5	61	2	0	11	85	0.71
10306588--10306635	23	2.0	23	88	4	69	27	0	2	70	0.98
10308289--10308348	31	1.9	31	93	0	102	40	11	10	38	1.75
10311135--10311159	12	2.1	12	100	0	50	24	24	0	52	1.48
10312560--10312615	24	2.5	22	77	16	60	62	8	3	25	1.41
10317429--10317553	64	2.0	64	85	0	169	45	12	12	28	1.79
10320205--10320237	3	11.0	3	100	0	66	0	33	0	66	0.92
10321094--10321136	23	1.9	23	90	4	70	46	4	4	44	1.45
10320728--10321267	192	2.8	187	80	9	499	45	8	4	41	1.56
10321536--10321574	2	19.5	2	91	0	60	51	0	2	46	1.14
10321646--10321692	18	2.5	19	87	12	71	42	0	0	57	0.98
10323614--10323666	9	5.9	9	78	8	54	5	11	0	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10323614--10323666	18	3.1	18	86	5	74	5	11	0	83	0.81
10323877--10323922	17	2.7	17	83	6	58	34	0	0	65	0.93
10324402--10324453	22	2.4	22	96	3	97	51	0	0	48	1.00
10325090--10325130	21	2.0	21	90	4	66	65	4	0	29	1.13
10325121--10325147	14	1.9	14	100	0	54	74	0	7	18	1.05
10325537--10325581	23	1.9	24	82	13	58	37	0	2	60	1.09
10326138--10326182	17	2.8	16	80	6	63	11	6	0	82	0.84
10326554--10326613	20	2.9	19	76	11	66	30	6	1	61	1.31
10326562--10326613	22	2.6	19	75	22	52	26	3	1	67	1.18
10326554--10326608	21	2.6	21	78	13	60	29	7	1	61	1.33
10335364--10336163	357	2.2	356	87	1	1136	36	13	13	37	1.84
10343330--10343546	109	2.0	109	100	0	434	30	21	10	38	1.86
10344627--10344663	19	1.9	19	94	0	65	27	2	0	70	1.01
10345135--10345179	16	2.8	16	93	3	72	68	2	0	28	1.01
10347600--10347637	2	19.0	2	100	0	76	50	0	0	50	1.00
10356014--10356097	44	1.9	44	92	0	141	53	2	21	22	1.57
10356208--10356235	14	2.0	14	100	0	56	35	7	7	50	1.57
10356383--10356425	16	2.7	16	88	0	59	41	4	4	48	1.44
10360287--10360338	20	2.5	21	84	6	70	40	1	34	23	1.66
10363559--10363781	75	3.0	75	93	2	360	30	18	24	26	1.98
10366431--10366457	14	1.9	14	100	0	54	44	0	0	55	0.99
10368392--10368686	105	2.8	105	93	1	513	39	5	9	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10369112--10369152	20	2.0	20	86	9	57	63	0	0	36	0.95
10369429--10369474	14	3.4	14	77	14	51	56	0	0	43	0.99
10371487--10371529	21	2.0	21	82	8	52	39	2	0	58	1.11
10371580--10371627	24	2.0	24	84	4	62	52	2	0	45	1.12
10375351--10375376	10	2.6	10	100	0	52	19	7	7	65	1.43
10375446--10375487	2	21.0	2	95	0	57	42	0	7	50	1.30
10380582--10380618	10	3.7	10	85	0	56	35	2	16	45	1.61
10385508--10385555	13	3.5	13	79	20	62	39	6	8	45	1.59
10385512--10385554	12	3.2	12	77	22	50	41	6	6	44	1.58
10385517--10385548	16	2.1	16	94	5	57	53	6	6	34	1.51
10386956--10386994	3	13.0	3	100	0	78	66	0	0	33	0.92
10387157--10387350	59	3.3	58	83	6	239	46	5	8	39	1.57
10387103--10387344	118	2.1	115	78	9	256	45	4	9	40	1.58
10387200--10387308	33	3.5	33	72	23	110	48	6	9	35	1.61
10388653--10388694	21	2.0	22	85	4	59	57	0	2	40	1.12
10389342--10389369	14	2.0	14	100	0	56	28	21	0	50	1.49
10393968--10394178	106	2.0	104	87	1	305	25	9	15	50	1.73
10398019--10398073	19	2.8	20	75	5	58	54	0	1	43	1.10
10403553--10403620	3	22.0	3	71	16	50	38	1	0	60	1.06
10403547--10403626	14	5.5	14	69	18	56	36	1	0	62	1.03
10404896--10404970	19	4.1	18	69	17	64	49	1	0	49	1.09
10404955--10405018	22	2.9	20	79	13	56	60	4	0	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10405800--10405861	25	2.5	24	73	17	63	67	1	1	29	1.09
10408875--10408922	20	2.4	19	76	10	51	47	0	0	52	1.00
10409106--10409139	2	17.0	2	100	0	68	50	0	0	50	1.00
10410484--10410517	17	2.0	17	94	0	59	50	0	0	50	1.00
10410529--10410565	11	3.3	11	88	3	56	51	0	0	48	1.00
10410987--10411016	6	5.0	6	91	0	51	30	33	20	16	1.94
10415872--10415913	20	2.1	20	86	0	57	76	2	11	9	1.12
10424941--10425477	49	11.0	48	79	8	489	27	12	22	37	1.90
10424949--10425470	48	10.7	49	77	9	367	27	12	22	36	1.90
10424941--10425470	97	5.4	97	80	6	506	28	12	23	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125