genome.fa.s46.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  97  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18831998--18832030	2	16.5	2	100	0	66	51	0	0	48	1.00
18832323--18832376	24	2.2	25	84	12	76	48	0	1	50	1.11
18835418--18835459	18	2.3	18	87	0	66	42	0	19	38	1.51
18835869--18836007	69	2.0	69	83	1	172	49	8	9	32	1.65
18836983--18837025	20	2.2	19	84	8	59	55	0	20	23	1.43
18836990--18837029	20	2.0	20	95	0	71	57	0	22	20	1.41
18838390--18838420	16	1.9	16	93	0	53	22	0	0	77	0.77
18838406--18838458	26	2.0	25	82	13	63	47	5	0	47	1.26
18838756--18838790	17	2.1	17	88	0	52	54	0	11	34	1.37
18839176--18839246	25	2.9	23	78	16	63	42	5	5	46	1.51
18839926--18839965	2	20.5	2	94	5	73	50	0	0	50	1.00
18840136--18840246	58	1.9	58	90	0	177	20	28	16	34	1.94
18841970--18842011	19	2.3	19	91	4	68	30	21	11	35	1.90
18848124--18848180	28	2.0	28	89	0	87	17	5	31	45	1.71
18848134--18848181	14	3.4	14	79	0	60	10	6	39	43	1.64
18848447--18848476	6	5.0	6	91	0	51	66	13	16	3	1.37
18849191--18849222	16	2.0	16	93	0	55	34	0	0	65	0.93
18849907--18849944	2	19.0	2	88	0	58	44	0	0	55	0.99
18850246--18850273	13	2.2	13	100	0	56	42	14	21	21	1.88
18861573--18861610	11	3.4	11	89	7	58	42	0	0	57	0.98
18862136--18862173	3	12.7	3	100	0	76	34	0	0	65	0.93
18862230--18862285	27	2.0	28	82	3	69	28	0	1	69	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18862243--18862282	10	3.9	10	90	3	62	25	0	0	75	0.81
18866556--18866607	21	2.5	22	78	12	56	50	13	3	32	1.60
18866950--18867009	28	2.1	28	96	0	111	38	20	5	36	1.74
18873527--18873574	6	8.7	6	80	13	50	52	0	0	47	1.00
18873527--18873574	11	4.4	11	76	7	53	52	0	0	47	1.00
18876859--18877034	83	2.1	83	91	2	282	41	13	13	31	1.83
18880185--18880221	13	2.8	13	91	0	65	24	8	8	59	1.53
18881385--18882905	161	9.6	158	74	10	801	35	8	13	42	1.74
18891402--18891450	25	2.0	26	92	8	84	46	4	6	42	1.47
18891402--18891466	25	2.6	24	82	7	76	43	3	10	43	1.55
18891754--18891908	52	3.0	51	82	6	177	56	6	12	25	1.59
18893969--18894123	82	1.9	81	86	2	222	35	3	9	51	1.51
18898717--18900255	161	9.6	161	76	8	1036	35	7	13	42	1.74
18898717--18900255	321	4.8	319	76	9	1197	35	7	13	42	1.74
18899710--18900005	162	1.8	162	79	5	348	35	8	12	43	1.74
18900923--18900972	26	1.9	26	95	0	91	38	20	6	36	1.77
18906580--18906615	13	2.8	13	95	0	63	25	8	5	61	1.46
18909065--18909223	54	3.0	54	83	1	205	57	6	10	24	1.57
18909074--18909309	106	2.1	111	85	11	310	57	6	9	26	1.56
18911314--18911366	27	1.9	28	88	3	81	37	0	5	56	1.23
18915243--18915283	17	2.4	18	80	19	52	75	4	4	14	1.14
18915252--18915307	19	3.1	19	76	5	53	76	5	1	16	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18915316--18915357	19	2.2	19	91	0	66	83	7	4	4	0.91
18915292--18915353	26	2.3	26	78	8	63	75	11	3	9	1.14
18915685--18915735	22	2.4	21	83	9	59	68	7	9	13	1.38
18922074--18922137	18	3.6	18	81	8	58	71	6	3	18	1.20
18922098--18922186	11	8.3	11	67	21	55	77	8	1	12	1.04
18922145--18922187	21	2.2	20	87	8	61	86	6	2	4	0.79
18922513--18922564	21	2.5	21	87	6	70	67	5	11	15	1.40
18924918--18924978	9	6.3	9	71	14	50	77	16	1	4	1.03
18925626--18925767	50	3.0	49	87	12	194	38	10	28	23	1.88
18925692--18925773	41	2.0	41	100	0	164	36	12	24	26	1.91
18933180--18933236	16	3.6	16	81	11	73	15	1	1	80	0.87
18933175--18933236	5	12.2	5	83	13	74	16	1	1	80	0.87
18933180--18933236	27	2.2	26	87	9	80	15	1	1	80	0.87
18933255--18933535	58	4.9	56	82	10	327	42	7	13	36	1.72
18933262--18933352	27	3.2	27	65	22	69	40	5	13	40	1.67
18933252--18933546	120	2.5	114	83	8	364	43	7	13	36	1.72
18933439--18933526	27	3.1	27	65	23	72	38	6	18	36	1.77
18935248--18935649	59	6.9	58	88	7	582	33	12	8	45	1.73
18935248--18935649	174	2.3	176	91	5	636	33	12	8	45	1.73
18935718--18935784	11	5.9	11	76	11	64	82	4	1	11	0.89
18937688--18937782	49	1.9	50	89	4	149	62	11	6	20	1.50
18941761--18941827	17	3.9	18	84	3	77	76	2	10	10	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18942257--18942281	12	2.1	12	100	0	50	24	20	8	48	1.76
18942415--18942444	12	2.6	12	94	5	53	30	0	33	36	1.58
18942453--18942649	79	2.5	77	85	4	245	37	6	23	32	1.81
18943171--18943578	21	18.8	21	78	9	381	37	9	15	37	1.81
18943171--18943578	127	3.1	127	75	10	394	37	9	15	37	1.81
18943171--18943581	85	4.7	91	81	6	378	37	9	16	36	1.81
18943790--18943830	20	2.0	20	90	0	64	36	17	17	29	1.92
18943982--18944018	14	2.6	14	91	0	56	37	5	16	40	1.71
18944155--18944487	41	8.0	40	79	9	294	27	14	15	42	1.85
18944937--18944975	20	2.0	20	90	5	62	28	5	15	51	1.64
18945966--18946073	51	2.1	51	84	1	137	53	10	10	25	1.66
18947952--18947998	24	2.0	24	87	8	69	55	6	0	38	1.26
18948484--18948593	35	3.1	35	72	12	100	39	16	12	31	1.86
18948806--18948844	17	2.3	17	86	0	51	33	20	17	28	1.96
18949207--18949262	23	2.5	24	77	11	64	53	12	5	28	1.60
18949207--18949255	24	2.0	24	84	7	64	55	12	6	26	1.60
18949066--18949262	46	4.1	46	71	12	130	45	13	8	32	1.74
18949323--18949352	16	1.9	16	93	6	53	46	20	6	26	1.75
18951163--18951366	101	2.0	100	84	0	264	45	10	16	27	1.80
18957373--18957411	16	2.4	16	91	0	60	66	7	5	20	1.36
18958526--18958725	100	2.0	99	91	4	323	36	11	11	42	1.76
18959899--18959948	12	4.3	12	73	16	52	18	6	2	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18959904--18959976	25	2.9	27	82	15	84	19	5	2	72	1.16
18959961--18960030	6	11.7	6	89	6	52	31	12	0	55	1.38
18959959--18960003	15	3.1	15	83	3	56	28	8	0	62	1.25
18959961--18960084	27	4.6	27	88	0	149	32	19	0	48	1.49
18959976--18960087	21	5.3	21	89	0	134	33	21	0	45	1.52
18959981--18960084	6	17.8	6	91	5	115	33	22	0	44	1.53
18965009--18965061	15	3.9	13	80	11	54	81	1	11	5	0.94
18966105--18966155	22	2.4	22	78	15	54	25	3	21	49	1.67
18967607--18967661	3	18.3	3	100	0	110	32	0	0	67	0.91
18968470--18968518	25	2.0	26	84	8	66	20	6	2	71	1.18
18970085--18970110	13	2.0	13	100	0	52	53	7	0	38	1.30
18970069--18970154	6	14.7	6	79	6	79	65	5	1	27	1.23
18971023--18971069	24	2.0	24	84	16	62	34	0	2	63	1.06
18971536--18971566	16	1.9	16	93	0	53	19	0	35	45	1.51
18971554--18971586	14	2.3	15	89	5	50	12	0	33	54	1.37
18971579--18971621	14	2.9	14	82	6	50	18	0	32	48	1.48
18971555--18971595	21	2.0	21	85	4	57	17	0	34	48	1.47
18971569--18971606	20	1.9	20	84	10	51	18	0	28	52	1.45
18971576--18971742	17	10.7	15	67	19	67	19	1	29	49	1.59
18971669--18971742	17	4.5	17	77	3	80	18	1	32	47	1.58
18973177--18973201	13	1.9	13	100	0	50	8	0	4	88	0.64
18973191--18973273	27	3.0	27	75	17	82	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18973868--18973918	23	2.2	23	85	0	66	37	15	17	29	1.91
18973486--18974157	133	5.1	132	84	1	771	37	17	20	24	1.93
18973486--18974141	265	2.5	264	84	3	818	38	17	19	24	1.93
18973984--18974051	23	3.0	23	91	2	111	29	20	23	26	1.99
18974143--18974317	88	2.0	88	93	0	296	40	17	20	22	1.92
18974235--18974758	133	3.9	133	84	3	651	39	17	18	24	1.92
18974456--18974515	23	2.7	23	87	7	79	33	20	20	26	1.97
18973628--18975109	597	2.4	604	84	5	1857	38	17	19	24	1.93
18974639--18974978	110	3.1	108	85	3	441	40	18	18	23	1.92
18974952--18975000	22	2.2	23	92	3	82	28	24	22	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125