genome.fa.s46.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  5  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698446--698481	13	2.8	13	87	12	56	77	8	0	13	0.98
701574--701604	2	15.5	2	100	0	62	51	0	0	48	1.00
706983--707063	18	4.3	20	70	20	75	48	8	6	37	1.59
707024--707070	18	2.4	19	82	13	51	53	6	4	36	1.46
707279--707350	28	2.6	28	84	4	83	59	4	0	36	1.17
707245--707370	20	6.4	20	72	18	79	57	7	1	34	1.36
707237--707399	28	5.7	28	72	16	70	54	8	3	33	1.46
707337--707375	20	2.0	20	94	0	69	53	7	5	33	1.51
707347--707606	32	8.7	31	72	17	138	53	10	5	30	1.58
707463--707510	12	4.0	12	77	0	51	58	12	2	27	1.46
707447--707590	55	2.6	55	85	3	191	56	11	3	28	1.50
707547--707619	32	2.4	30	88	4	110	54	12	5	27	1.59
707614--707661	14	3.2	14	78	16	60	60	4	4	31	1.35
707599--707654	14	3.7	15	75	15	62	55	7	5	32	1.50
707465--707702	85	2.8	88	76	10	244	55	10	4	29	1.53
707606--707669	31	2.1	31	90	0	101	54	10	6	28	1.59
707718--707878	24	7.0	24	75	16	137	54	11	3	30	1.53
707711--707878	71	2.5	65	80	14	189	54	10	4	30	1.54
707801--707848	20	2.3	21	92	3	80	58	12	2	27	1.46
707742--707878	47	2.9	46	81	12	140	54	11	3	29	1.53
707801--707861	21	3.0	20	80	7	59	57	11	1	29	1.44
708837--709053	42	5.1	43	85	5	282	40	20	12	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710480--710510	12	2.5	13	94	5	55	6	3	6	83	0.88
710803--710841	20	2.0	20	84	0	51	5	17	2	74	1.12
716525--716562	20	1.9	20	88	0	58	55	10	7	26	1.61
716570--716641	18	3.9	18	67	13	56	52	8	5	33	1.55
716814--716858	21	2.2	21	88	4	65	55	11	4	28	1.54
716782--717123	32	11.1	32	74	13	279	53	10	6	29	1.59
716899--717014	12	10.0	12	67	7	60	54	10	6	28	1.60
716907--717014	36	3.1	36	85	6	152	53	10	7	28	1.61
716797--717235	124	3.7	119	81	9	409	53	9	6	30	1.59
716985--717094	55	2.0	54	87	1	157	55	10	6	27	1.58
716965--717136	87	2.0	87	88	0	254	54	9	6	29	1.58
717058--717135	20	4.2	20	69	27	64	52	8	5	33	1.55
717090--717148	22	2.8	21	80	14	68	50	8	5	35	1.55
716981--717210	87	2.7	86	81	5	245	53	9	6	30	1.58
717158--717235	31	2.6	30	89	6	113	53	8	7	29	1.60
717184--717273	31	3.0	29	82	9	85	52	7	6	33	1.56
717224--717344	24	5.2	23	70	18	90	52	8	4	34	1.53
717222--717360	47	3.0	46	82	7	149	52	8	5	33	1.54
717282--717343	12	5.4	12	70	14	51	56	6	1	35	1.35
717280--717360	21	3.8	20	70	13	63	55	8	2	33	1.44
717305--717355	25	2.0	25	85	7	68	58	9	1	29	1.41
717364--717424	20	3.3	18	80	13	70	55	9	6	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718322--718357	19	1.9	19	88	5	56	47	0	0	52	1.00
718805--718846	15	2.8	15	85	7	59	73	0	0	26	0.83
719182--719250	31	2.2	30	82	10	77	55	0	4	40	1.20
722752--722818	35	1.9	35	93	0	116	35	8	13	41	1.76
726039--726088	12	4.2	12	84	0	55	40	28	6	26	1.79
726042--726099	24	2.4	25	80	8	68	43	24	5	27	1.75
726823--727558	187	4.0	184	79	8	724	41	11	11	36	1.77
726930--727184	61	4.1	62	68	13	146	41	11	10	36	1.76
726823--727574	372	2.0	370	81	8	866	41	11	11	35	1.77
735163--735409	130	1.9	130	80	6	295	40	19	11	27	1.87
737577--737869	62	4.7	63	67	13	158	42	11	10	35	1.76
737525--738308	187	4.2	186	79	6	793	41	11	11	35	1.78
740726--740778	21	2.6	21	82	8	56	33	3	22	39	1.72
747018--747069	18	2.9	17	81	16	61	21	1	3	73	1.10
747411--747570	55	2.9	55	80	3	153	25	5	10	58	1.52
747408--747615	56	3.7	56	79	2	222	24	5	9	60	1.50
749431--749459	14	2.1	14	100	0	58	6	6	0	86	0.72
749431--749467	15	2.5	15	91	4	58	10	8	0	81	0.89
749687--749720	17	2.0	17	88	11	52	11	5	0	82	0.83
749737--749778	12	3.5	12	84	12	52	71	7	0	21	1.09
749745--749800	11	5.0	11	79	12	51	75	5	0	19	1.00
750235--750311	31	2.5	31	85	2	93	57	15	6	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750483--750516	13	2.6	13	90	0	50	0	14	11	73	1.10
750819--750905	20	4.5	19	74	18	72	73	2	4	19	1.12
751150--751483	43	7.7	44	79	6	308	43	17	14	24	1.86
751135--751476	86	3.9	86	81	4	348	43	18	14	23	1.86
751557--751587	15	2.1	15	93	0	53	45	19	9	25	1.81
752156--752227	21	3.4	21	74	9	65	44	11	9	34	1.73
753811--753851	15	2.6	16	85	14	50	2	17	2	78	0.98
757417--757462	15	2.9	16	80	9	58	17	2	4	76	1.06
757417--757464	16	3.0	16	81	9	62	18	2	4	75	1.07
759149--759247	5	20.2	5	73	13	64	76	1	4	18	0.99
759161--759249	40	2.2	38	81	16	101	77	1	3	17	0.97
761421--761454	2	17.0	2	93	0	59	50	0	2	47	1.16
763973--764016	18	2.4	18	80	0	52	68	2	0	29	1.02
766359--766391	17	1.9	17	100	0	66	27	0	0	72	0.85
766361--766427	26	2.7	23	80	14	80	28	1	1	68	1.07
766361--766429	27	2.7	25	86	8	88	28	1	1	68	1.07
766835--767043	116	1.8	116	84	6	289	33	18	18	29	1.94
767682--767769	41	2.0	42	87	8	124	19	6	13	60	1.55
773910--773954	17	2.6	17	96	0	81	35	24	4	35	1.76
782400--782437	18	2.1	18	90	0	58	23	5	26	44	1.74
782420--782517	36	2.7	36	91	0	160	32	4	18	44	1.68
786586--786618	17	1.9	17	93	0	57	57	9	0	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787617--787679	10	6.4	10	73	8	58	61	1	1	34	1.15
791884--791926	17	2.4	19	80	7	54	60	0	4	34	1.17
792314--792385	20	3.8	19	72	9	67	50	0	1	48	1.09
792312--792354	18	2.3	18	85	14	61	46	0	0	53	1.00
793365--793405	16	2.4	18	88	8	59	75	0	2	21	0.92
793366--793405	17	2.3	18	86	4	55	77	0	2	20	0.88
793365--793416	16	2.9	19	81	16	58	71	1	3	23	1.13
793567--793633	33	2.0	33	91	0	107	32	23	10	32	1.89
793804--793843	16	2.5	15	80	11	53	67	0	0	32	0.91
794725--794756	15	2.1	15	94	0	55	84	0	6	9	0.78
794920--794957	20	1.9	20	88	0	58	71	2	7	18	1.23
795776--795845	31	2.2	32	80	12	83	27	25	22	24	2.00
796267--796315	12	4.2	11	82	10	53	12	2	4	81	0.91
796388--796746	121	2.9	124	85	9	506	45	8	13	32	1.74
796383--796747	61	6.1	58	82	11	434	45	8	13	32	1.73
799968--799997	15	2.0	15	93	0	51	50	6	23	20	1.71
802186--802211	4	6.5	4	100	0	52	53	0	0	46	1.00
803278--803593	59	5.2	59	81	12	329	33	9	5	51	1.57
803270--803600	60	5.4	61	79	9	352	34	9	6	50	1.59
804140--804197	20	2.7	23	71	13	59	53	10	0	36	1.35
804496--804595	4	24.5	4	71	15	71	67	0	2	31	1.02
804482--804562	31	2.9	30	75	24	95	64	0	3	32	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804465--804599	15	9.5	13	66	21	51	65	0	2	31	1.07
804965--805106	28	4.9	28	77	9	108	49	32	2	16	1.57
805059--805148	35	2.5	36	81	15	107	51	32	2	14	1.55
805094--805150	22	2.6	21	80	5	60	50	35	1	12	1.50
808144--808195	21	2.4	22	87	6	70	9	9	5	75	1.20
808628--809168	145	3.7	146	77	6	474	39	13	15	31	1.86
809744--809796	21	2.6	22	82	11	60	20	3	1	73	1.08
809908--809948	18	2.3	18	86	0	55	17	4	9	68	1.35
809919--809960	18	2.3	19	80	12	52	16	2	4	76	1.07
809979--810035	3	19.7	3	89	7	91	66	1	0	31	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125