genome.fa.s46.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  26  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4963521--4963630	5	21.6	5	74	15	84	74	1	4	19	1.08
4963525--4963611	6	14.7	6	69	21	51	77	1	4	17	1.01
4963521--4963647	36	3.3	36	78	9	92	74	2	3	19	1.09
4964474--4964529	9	6.0	9	85	6	58	67	5	1	25	1.21
4964474--4964527	18	2.9	18	86	5	72	66	5	1	25	1.23
4964491--4964538	22	2.2	21	79	17	53	64	6	4	25	1.35
4964584--4964646	29	2.4	25	81	10	72	65	0	4	30	1.13
4964656--4964740	6	13.2	6	74	16	55	76	1	3	18	1.00
4964658--4964750	14	5.9	14	73	22	60	77	1	4	17	0.99
4964896--4964920	10	2.5	10	100	0	50	8	0	0	92	0.40
4964928--4965012	43	2.0	41	88	8	127	35	20	20	24	1.96
4964951--4965072	61	2.0	64	91	4	205	40	16	16	27	1.89
4965014--4965120	42	2.6	41	89	2	160	36	21	15	26	1.94
4966132--4966171	17	2.4	17	95	4	73	10	10	0	80	0.92
4966133--4966170	8	4.8	8	87	12	60	10	10	0	78	0.95
4966132--4966171	9	4.8	9	82	17	59	10	10	0	80	0.92
4966126--4966174	18	2.8	18	87	12	75	12	14	0	73	1.10
4974196--4975241	535	2.0	535	96	0	1939	28	23	14	34	1.93
4976782--4977243	60	7.7	59	79	9	372	34	13	8	44	1.73
4976782--4977242	119	3.9	115	82	12	447	34	13	8	44	1.73
4976884--4977244	60	6.1	57	81	8	406	34	13	7	44	1.72
4977261--4977369	6	18.5	6	70	16	68	77	0	5	16	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4977256--4977374	24	5.1	23	79	10	109	75	0	6	16	1.06
4977298--4977374	16	5.1	14	75	20	57	77	0	6	15	0.95
4977291--4977369	12	6.8	11	77	11	77	79	0	5	15	0.89
4977261--4977383	5	24.6	5	66	22	55	75	0	5	17	1.04
4978260--4978298	9	4.2	9	83	3	51	71	5	2	20	1.17
4978448--4978549	6	16.8	6	77	15	79	78	1	1	17	0.94
4978448--4978549	11	8.4	12	72	18	79	78	1	1	17	0.94
4978448--4978549	23	4.5	22	75	15	93	78	1	1	17	0.94
4978478--4978536	7	8.9	7	82	12	56	74	1	1	22	1.00
4988164--4988204	20	2.0	22	85	9	59	4	14	4	75	1.14
4992280--4992521	125	2.0	119	87	6	351	32	21	10	35	1.88
5000311--5000344	18	1.9	17	88	5	50	55	14	17	11	1.68
5001196--5001485	61	5.0	57	80	13	299	47	4	8	39	1.55
5001261--5001471	116	1.9	109	86	6	271	47	4	9	37	1.57
5001461--5001489	14	2.0	15	93	6	51	48	6	0	44	1.29
5001412--5001613	72	2.8	73	84	8	263	49	5	8	36	1.58
5001549--5001663	58	2.0	56	85	5	151	48	6	6	37	1.57
5001741--5001773	5	6.8	5	93	6	59	18	0	0	81	0.68
5001738--5001774	15	2.5	14	87	12	56	16	0	0	83	0.64
5002502--5002551	15	3.5	13	79	15	55	40	0	0	60	0.97
5002503--5002545	14	3.2	15	81	18	51	41	0	0	58	0.98
5002533--5002603	25	2.9	24	79	8	81	40	1	0	57	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5002543--5002591	25	2.0	25	95	0	89	42	2	0	55	1.11
5002610--5002651	22	1.9	22	90	0	66	42	14	2	40	1.58
5003903--5003929	6	4.5	6	100	0	54	81	0	0	18	0.69
5003948--5003983	14	2.7	13	87	8	54	47	5	0	47	1.25
5004029--5004095	27	2.5	28	80	11	77	52	0	1	46	1.09
5004220--5004266	24	1.9	25	83	12	62	61	0	2	36	1.08
5006377--5006410	17	2.0	17	94	0	59	55	0	0	44	0.99
5006424--5006462	18	2.2	18	90	0	60	66	0	0	33	0.92
5010528--5010717	97	1.9	98	86	1	265	28	14	22	34	1.94
5012412--5012476	23	3.0	21	73	10	60	40	0	1	58	1.07
5015212--5015236	7	3.6	7	100	0	50	16	44	0	40	1.47
5030415--5030469	23	2.5	22	76	23	53	45	3	0	50	1.19
5030922--5030951	15	2.0	15	100	0	60	6	20	20	53	1.67
5031152--5031192	21	2.0	20	86	9	57	65	2	4	26	1.25
5032967--5033002	2	18.0	2	88	0	54	52	2	0	44	1.15
5037373--5037431	19	3.1	19	80	9	59	37	0	8	54	1.31
5037471--5037511	22	1.9	22	85	5	57	46	2	0	51	1.14
5037493--5037533	18	2.3	18	87	8	57	60	0	0	39	0.96
5037493--5037530	16	2.2	18	86	9	53	60	0	0	39	0.97
5043488--5043524	18	2.0	18	89	5	56	40	2	0	56	1.13
5043575--5043615	22	1.9	21	85	5	55	58	2	4	34	1.32
5044457--5044521	26	2.4	27	92	2	105	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5044457--5044530	27	2.8	26	83	4	94	52	4	1	41	1.28
5044456--5044539	26	3.2	25	75	8	78	50	3	1	45	1.27
5044705--5044747	20	2.1	21	86	4	61	51	0	2	46	1.13
5044812--5044842	13	2.5	13	94	5	55	29	6	0	64	1.18
5044896--5044960	13	4.9	13	75	14	53	55	1	0	43	1.09
5044903--5044958	29	2.0	28	85	3	76	55	1	0	42	1.10
5045127--5045160	14	2.5	13	85	4	50	47	5	2	44	1.42
5057073--5057110	11	3.2	12	85	14	53	68	0	0	31	0.90
5057074--5057110	13	2.9	13	80	19	51	67	0	0	32	0.91
5062950--5063000	26	2.0	26	88	0	75	29	0	9	60	1.28
5062937--5062987	22	2.3	22	83	12	68	27	0	9	62	1.26
5065638--5065670	3	10.7	3	93	6	57	33	0	0	66	0.92
5065845--5065878	14	2.2	16	90	10	54	35	0	2	61	1.11
5066834--5066903	27	2.7	27	79	16	76	14	5	1	78	1.00
5066942--5067283	62	5.7	59	85	5	431	45	6	13	34	1.69
5067024--5067122	32	3.2	32	64	28	86	41	8	16	34	1.77
5066942--5067283	61	5.7	59	85	5	413	45	6	13	34	1.69
5070145--5070200	26	2.2	26	80	6	60	57	0	1	41	1.09
5076963--5076997	18	2.0	17	88	5	52	34	0	5	60	1.21
5077915--5077961	23	2.0	23	83	0	58	36	14	8	40	1.77
5084789--5084856	29	2.3	29	82	5	75	48	1	2	47	1.26
5084812--5084926	29	4.1	28	72	21	82	51	2	0	46	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5084916--5084954	16	2.4	16	78	0	51	79	0	0	20	0.73
5095436--5095482	19	2.4	21	76	20	57	40	0	0	59	0.97
5095450--5095479	10	3.1	10	95	4	53	36	0	0	63	0.95
5095452--5095481	9	3.2	9	95	4	51	36	0	0	63	0.95
5099841--5099893	26	2.0	28	88	7	83	52	1	3	41	1.30
5100201--5100248	22	2.2	22	84	0	60	47	6	18	27	1.72
5103283--5103360	32	2.4	31	85	6	93	39	1	3	55	1.26
5103398--5103572	94	1.9	91	84	3	233	42	12	13	30	1.82
5103759--5103791	16	1.9	18	88	11	52	30	0	0	69	0.88
5104001--5104039	21	1.9	20	89	5	60	66	0	0	33	0.92
5105778--5105817	15	2.7	15	92	0	62	2	32	22	42	1.67
5106476--5106501	13	2.0	13	100	0	52	53	0	0	46	1.00
5109203--5109283	33	2.5	33	100	0	162	37	3	14	44	1.63
5111308--5111346	13	3.0	13	80	0	51	48	2	0	48	1.15
5116237--5116331	16	5.7	17	71	13	56	30	0	6	63	1.19
5116327--5116366	14	2.4	18	80	19	52	17	5	2	75	1.10
5116926--5116960	18	1.9	18	94	0	61	25	28	20	25	1.99
5117371--5117410	1	40.0	1	100	0	80	100	0	0	0	0.00
5117407--5117759	57	6.2	56	88	7	523	46	7	11	34	1.69
5117408--5117748	113	3.0	113	93	5	562	45	7	12	34	1.70
5122975--5123027	26	2.0	28	88	7	83	52	1	3	41	1.30
5123334--5123381	22	2.2	22	84	0	60	47	6	18	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5126418--5126495	32	2.4	31	85	6	93	39	1	3	55	1.26
5126533--5126706	94	1.9	91	84	4	233	43	12	13	30	1.82
5126893--5126925	16	1.9	18	88	11	52	30	0	0	69	0.88
5127135--5127173	21	1.9	20	89	5	60	66	0	0	33	0.92
5128903--5128942	15	2.7	15	92	0	62	2	32	22	42	1.67
5129600--5129625	13	2.0	13	100	0	52	53	0	0	46	1.00
5130122--5130155	1	34.0	1	93	0	59	0	97	0	2	0.19
5134420--5134458	13	3.0	13	80	0	51	48	2	0	48	1.15
5139435--5139476	17	2.4	18	80	11	52	16	4	2	76	1.07
5139837--5139893	25	2.3	24	76	8	60	38	3	19	38	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125