genome.fa.s46.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  33  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6497099--6498236	632	1.8	630	81	5	1449	40	7	10	41	1.69
6497730--6500124	361	6.6	360	76	8	1787	40	8	9	42	1.67
6499967--6500269	145	2.1	146	81	3	351	42	6	8	42	1.61
6500101--6503107	181	16.8	181	74	10	2031	40	8	9	41	1.68
6500932--6501729	180	4.4	180	78	5	729	40	7	9	42	1.66
6500101--6503107	358	8.4	360	73	11	1645	40	8	9	41	1.68
6503136--6507114	180	22.1	179	74	8	2565	39	8	10	42	1.68
6503607--6507106	181	19.4	180	75	7	2432	39	8	10	41	1.69
6503136--6507106	361	11.0	359	75	7	2489	39	8	10	41	1.68
6503626--6507114	904	3.9	898	76	8	2469	39	8	10	41	1.69
6506087--6506127	20	2.0	22	86	13	61	43	4	9	41	1.59
6503122--6521246	540	33.6	533	69	13	3540	40	8	9	41	1.68
6507177--6509891	180	15.0	180	72	10	1674	40	8	10	40	1.70
6507916--6509891	357	5.5	352	75	7	1336	40	8	10	40	1.70
6509875--6509948	33	2.2	34	88	7	107	43	5	13	37	1.67
6510257--6511407	181	6.4	177	76	6	849	40	8	10	40	1.71
6510271--6514430	357	11.7	353	72	11	1727	41	8	9	41	1.67
6510281--6527921	538	32.6	533	70	12	5875	40	8	9	41	1.68
6511515--6511961	171	2.6	171	79	4	411	41	9	9	39	1.70
6511804--6520268	180	46.8	179	69	13	2519	40	7	9	41	1.67
6511804--6515122	181	18.6	181	73	10	1742	41	7	9	41	1.66
6511804--6515099	358	9.2	354	74	10	2117	41	7	9	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6511517--6527922	541	30.3	535	69	13	3708	40	8	9	41	1.68
6512754--6513051	158	1.9	159	81	4	361	42	8	7	42	1.62
6514378--6514428	18	2.9	17	77	19	52	50	5	3	39	1.45
6516250--6516282	17	2.0	17	88	5	50	48	3	6	42	1.43
6515419--6520268	361	13.5	357	74	9	2320	39	7	10	42	1.67
6515909--6527921	180	66.5	182	71	11	4989	40	8	9	41	1.68
6521275--6527921	361	18.6	357	74	9	3785	40	8	9	41	1.68
6522394--6522432	18	2.1	19	85	4	53	48	7	12	30	1.69
6521275--6527919	181	37.1	176	72	10	2340	40	8	9	41	1.68
6527786--6528047	143	1.8	143	89	1	409	38	8	9	43	1.68
6528542--6528863	168	1.9	166	85	5	425	41	9	8	40	1.67
6528554--6528863	169	1.8	168	84	6	403	41	9	8	40	1.68
6528985--6529885	180	5.0	181	76	6	735	40	8	9	41	1.69
6529004--6529839	181	4.7	181	74	8	458	41	8	9	41	1.67
6529921--6531706	181	10.1	178	72	12	1080	40	8	10	41	1.69
6530698--6531686	541	1.8	536	81	6	1217	40	8	11	40	1.70
6530706--6531705	359	2.8	360	80	5	1071	40	8	10	40	1.70
6534123--6534167	22	2.0	22	95	0	81	15	28	8	46	1.76
6540400--6540834	146	3.0	146	86	2	572	35	17	8	38	1.80
6541753--6541925	80	2.2	80	84	2	213	23	9	26	41	1.85
6541917--6541964	25	1.9	25	91	0	78	12	8	37	41	1.73
6547103--6547435	181	1.8	181	83	2	445	42	8	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6547103--6547480	181	2.1	181	82	3	440	41	8	8	41	1.67
6547516--6549383	181	10.3	176	74	8	967	40	8	8	42	1.66
6547592--6549383	541	3.3	538	78	5	1469	40	8	9	41	1.67
6549485--6549788	167	1.8	163	83	7	400	39	6	10	43	1.64
6549647--6550015	178	2.1	180	78	5	390	37	7	10	44	1.68
6550282--6550682	182	2.3	176	81	4	439	40	7	9	42	1.65
6551133--6552812	180	9.4	177	73	7	1006	38	8	10	41	1.71
6551135--6557437	361	17.5	356	74	9	3593	40	8	9	41	1.69
6551135--6555103	181	22.1	181	73	8	2456	39	8	9	41	1.69
6552036--6553707	921	1.8	921	80	6	2029	40	8	9	41	1.67
6552823--6557370	181	25.4	180	73	10	1924	40	8	9	41	1.68
6554082--6554123	20	2.2	20	82	4	50	42	2	0	54	1.13
6554705--6555031	175	1.9	171	81	7	388	37	8	9	44	1.68
6554943--6555264	161	2.0	163	81	5	375	39	9	10	41	1.71
6555099--6562556	363	20.9	360	74	9	3832	40	8	9	41	1.69
6558060--6558396	167	2.0	168	83	2	428	41	10	7	40	1.67
6558228--6562556	181	24.2	180	74	8	2299	40	8	10	41	1.69
6558560--6558601	20	2.0	21	86	4	59	45	4	11	38	1.62
6558245--6562545	544	8.0	532	74	10	1653	40	8	9	41	1.69
6559476--6559518	20	2.1	20	83	12	52	44	2	13	39	1.57
6562498--6562631	62	2.2	61	91	1	214	44	13	13	29	1.82
6562678--6564784	180	11.8	181	75	8	1431	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6562678--6566314	353	10.1	353	71	11	1622	40	8	9	40	1.70
6562678--6564469	714	2.5	712	78	7	1653	41	8	9	41	1.68
6564752--6564805	19	2.9	19	91	2	83	51	9	11	27	1.67
6565439--6566314	172	5.0	174	76	8	618	40	8	9	41	1.68
6562678--6566310	354	10.1	351	71	13	1015	40	8	9	40	1.70
6566192--6566429	120	2.0	119	82	2	289	46	7	11	34	1.69
6566339--6566951	181	3.4	176	76	6	547	41	8	10	39	1.70
6567008--6567413	182	2.2	181	82	2	458	40	7	8	43	1.64
6567449--6568945	181	8.5	177	73	12	854	41	7	8	42	1.64
6568054--6568928	180	4.9	180	76	7	667	41	7	8	42	1.64
6568990--6569512	169	3.0	170	78	7	525	40	8	10	41	1.69
6569006--6569689	351	2.0	346	80	3	789	39	8	10	41	1.69
6570036--6571878	181	10.2	181	78	6	1666	41	8	8	41	1.66
6570493--6570525	18	1.9	17	88	11	50	48	6	6	39	1.53
6570036--6571874	361	5.1	361	77	6	1746	41	8	8	41	1.65
6572127--6572169	20	2.2	20	83	4	52	37	4	0	58	1.19
6571963--6572283	177	1.8	177	84	2	448	43	8	7	40	1.62
6571889--6572821	180	5.2	178	74	8	667	41	8	8	41	1.66
6571212--6572564	677	2.0	673	80	5	1532	40	8	8	41	1.66
6571944--6572808	361	2.4	353	78	8	856	41	7	8	41	1.65
6572902--6573156	124	2.1	124	95	0	456	41	9	12	36	1.75
6573026--6589043	181	88.6	179	71	11	5976	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6574155--6582769	360	24.0	358	74	8	4904	40	8	9	41	1.69
6577119--6578441	721	1.8	719	78	5	1470	41	8	9	40	1.68
6574155--6589039	541	27.4	538	70	11	5331	40	8	9	41	1.68
6584067--6584108	21	2.0	21	90	0	66	47	4	7	40	1.52
6585396--6585421	6	4.3	6	100	0	52	50	0	0	50	1.00
6586342--6586380	20	2.0	20	85	9	55	38	5	2	53	1.37
6582779--6588184	715	7.6	708	75	9	3569	40	8	9	42	1.67
6582779--6588184	535	10.1	532	75	9	3142	40	8	9	42	1.67
6588079--6588290	106	2.0	104	81	5	248	36	8	8	47	1.62
6588282--6588477	101	1.9	102	80	7	229	45	8	10	35	1.69
6589141--6589263	65	1.9	65	89	5	194	39	8	16	35	1.78
6591042--6591583	45	12.1	45	75	5	303	26	26	28	18	1.98
6591042--6591583	90	6.0	88	77	6	376	26	26	28	18	1.98
6591042--6591551	135	3.8	135	76	6	435	26	26	28	18	1.98
6591310--6591583	89	3.1	90	81	2	302	27	27	28	17	1.97
6591440--6591611	90	1.9	90	80	4	204	26	26	30	16	1.96
6591716--6591814	45	2.2	45	75	8	105	25	19	31	24	1.98
6596409--6596435	11	2.5	11	100	0	54	44	0	40	14	1.46
6599506--6599696	45	4.2	45	68	10	129	24	24	29	21	1.99
6608413--6608500	45	2.0	45	86	2	124	25	19	28	27	1.99
6608439--6608623	45	4.1	44	75	14	137	24	22	30	22	1.99
6608644--6608771	45	2.8	44	82	2	148	28	26	27	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6614948--6615058	45	2.5	45	78	0	123	27	23	27	20	1.99
6635573--6635603	12	2.6	12	100	0	62	22	41	25	9	1.84
6636236--6636372	45	3.0	44	73	12	127	19	37	21	20	1.94
6636174--6636310	73	1.9	73	81	0	166	18	37	21	21	1.95
6638271--6638721	118	3.7	118	86	5	564	31	13	8	45	1.73
6638271--6638729	183	2.5	180	82	8	581	31	13	8	46	1.72
6638738--6638822	5	17.6	5	72	22	58	78	2	4	14	1.00
6638271--6638741	60	7.8	59	77	12	381	32	13	8	46	1.72
6638738--6638894	13	11.7	13	67	19	65	73	3	4	17	1.15
6638737--6638822	30	2.9	29	79	6	93	77	2	5	13	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125