genome.fa.s46.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  84  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16752182--16752221	10	4.0	10	83	0	53	47	27	0	25	1.52
16757210--16757282	21	3.5	21	72	12	60	31	20	17	30	1.96
16759183--16759270	19	4.6	20	79	12	85	21	13	25	39	1.90
16759746--16759778	3	11.0	3	93	0	57	36	0	33	30	1.58
16766963--16767018	25	2.2	26	78	15	64	7	10	5	76	1.14
16766980--16767095	42	2.7	43	79	15	123	13	9	2	74	1.17
16767065--16767124	10	5.8	10	70	14	50	16	3	6	73	1.18
16767014--16767125	11	10.5	11	67	18	58	16	5	3	75	1.13
16767016--16767100	43	2.0	41	84	13	109	15	7	1	76	1.06
16767335--16767463	33	3.9	32	77	7	98	27	16	20	35	1.94
16767563--16767635	32	2.2	32	83	7	85	31	16	16	35	1.91
16767626--16767699	33	2.2	33	83	4	87	31	16	20	32	1.94
16767644--16767708	33	2.0	33	87	6	96	32	18	16	32	1.94
16767899--16767941	22	2.0	22	85	0	59	27	23	13	34	1.93
16767951--16767992	22	1.9	22	90	0	66	30	16	19	33	1.94
16769019--16769069	12	4.2	12	82	7	59	0	17	3	78	0.90
16769021--16769076	29	1.9	28	82	13	69	1	17	3	76	1.01
16769022--16769114	13	6.6	14	68	20	52	4	21	2	72	1.13
16770824--16770881	24	2.4	25	83	11	68	74	5	5	15	1.18
16770847--16770913	24	2.9	24	75	18	70	73	8	1	16	1.16
16771755--16771799	20	2.3	20	84	3	56	77	2	2	17	0.97
16771771--16771920	3	52.0	3	66	16	77	62	2	7	28	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16771776--16771893	28	4.2	28	76	12	118	63	1	6	27	1.29
16771805--16771901	8	11.9	8	72	12	72	60	1	8	29	1.32
16771799--16771907	57	1.9	57	96	0	200	60	1	9	28	1.38
16771788--16771902	28	4.1	29	82	8	148	60	1	7	29	1.35
16771813--16771907	17	5.2	17	73	18	68	61	1	9	28	1.34
16772170--16772735	121	4.7	121	83	3	601	42	14	23	18	1.88
16772283--16772740	240	1.9	242	86	4	667	43	15	23	18	1.88
16773459--16773495	19	1.9	19	88	0	56	40	10	0	48	1.38
16773409--16773514	41	2.5	42	80	7	108	38	8	4	48	1.55
16773460--16773539	22	3.8	20	75	12	63	37	5	1	56	1.29
16773460--16773554	22	4.5	21	74	11	61	35	7	2	54	1.40
16773479--16773570	22	4.2	21	74	13	60	35	5	2	56	1.34
16773663--16773714	22	2.4	22	80	0	59	32	9	11	46	1.73
16783529--16783575	24	2.0	24	86	0	67	36	21	4	38	1.73
16783834--16783862	2	14.5	2	100	0	58	48	0	0	51	1.00
16785322--16785396	38	2.0	37	92	2	123	58	8	16	17	1.60
16788982--16789019	18	2.1	18	100	0	76	21	5	15	57	1.57
16792369--16792402	12	2.7	13	86	9	52	20	0	8	70	1.13
16792369--16792407	12	3.2	12	85	3	51	20	0	7	71	1.10
16793029--16793180	20	8.2	20	65	28	95	32	6	9	51	1.61
16793022--16793142	32	4.1	32	73	22	118	31	5	8	54	1.54
16792951--16793143	87	2.3	84	83	12	243	31	5	8	54	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16793263--16793322	19	3.3	19	77	17	72	23	5	11	60	1.51
16793228--16793305	16	4.8	16	70	20	56	26	5	11	56	1.55
16804197--16804294	51	1.9	50	83	6	126	22	14	10	53	1.71
16805202--16805470	44	6.2	44	83	5	323	28	13	18	39	1.89
16805202--16805470	86	3.1	86	83	4	346	28	13	18	39	1.89
16805213--16805470	43	6.0	43	82	6	272	29	13	18	37	1.90
16805727--16805794	6	11.0	6	80	3	73	26	2	2	67	1.19
16805728--16805793	13	5.2	13	79	1	73	24	3	3	69	1.16
16807132--16807533	56	7.4	56	72	9	271	27	15	12	44	1.82
16807415--16807540	55	2.3	55	81	4	141	30	11	11	46	1.76
16807814--16807848	15	2.3	15	95	0	61	60	11	8	20	1.57
16814229--16814271	5	8.6	5	85	10	52	76	0	23	0	0.78
16815759--16815826	3	22.3	3	96	3	127	66	1	0	32	1.01
16816487--16816652	34	4.9	34	75	2	138	31	12	20	35	1.90
16816487--16816652	68	2.4	68	82	4	192	31	12	20	35	1.90
16818883--16819284	199	2.0	199	93	1	684	40	13	10	35	1.79
16824762--16824854	19	4.7	19	74	10	80	56	8	0	34	1.30
16824772--16824825	16	3.5	16	72	10	58	59	7	0	33	1.25
16824762--16824854	30	3.1	30	96	1	168	56	8	0	34	1.30
16824762--16824839	14	5.3	14	70	11	66	58	7	0	33	1.26
16824779--16824836	11	5.5	11	74	14	59	58	8	0	32	1.28
16824998--16825083	19	4.6	19	84	13	124	55	11	0	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16824992--16825083	37	2.4	38	89	8	136	57	11	0	30	1.35
16825117--16825174	31	1.9	30	82	10	73	39	15	10	34	1.81
16826470--16826626	64	2.5	64	94	2	273	33	14	11	41	1.81
16826570--16826862	126	2.3	125	84	4	367	33	14	15	36	1.88
16826662--16826874	63	3.4	62	74	9	198	35	14	15	35	1.88
16827270--16827305	16	2.2	16	100	0	72	38	0	11	50	1.38
16827308--16827363	26	2.2	24	76	17	58	50	0	7	42	1.30
16827317--16827395	26	2.9	27	88	5	115	50	0	3	45	1.19
16827814--16827860	20	2.3	20	85	10	60	31	8	12	46	1.72
16827913--16827986	18	4.0	18	74	15	62	31	4	13	51	1.60
16830528--16830557	14	2.1	14	93	0	51	66	0	6	26	1.16
16831165--16831200	14	2.6	14	91	4	56	41	16	13	27	1.87
16831192--16831260	18	3.7	19	77	11	81	47	10	5	36	1.61
16831188--16831259	19	4.1	18	74	15	62	48	9	6	34	1.63
16831306--16831347	20	2.1	20	90	0	66	57	4	4	33	1.41
16832400--16832438	20	1.9	21	84	5	53	12	7	5	74	1.20
16833974--16834000	7	3.9	7	100	0	54	74	0	0	25	0.83
16834651--16834700	17	2.8	17	80	16	57	78	4	18	0	0.91
16834654--16834736	19	4.4	18	78	16	64	79	2	15	2	0.94
16834644--16834716	26	2.8	26	80	17	80	80	2	16	0	0.82
16834644--16834736	42	2.2	42	81	11	111	80	2	15	2	0.90
16835256--16835312	19	3.1	19	75	10	55	73	0	24	1	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16836910--16836970	26	2.3	27	86	11	90	37	13	14	34	1.85
16837393--16838148	40	18.9	40	73	5	312	36	14	12	37	1.83
16837584--16837690	41	2.6	41	75	7	119	34	14	12	38	1.84
16837415--16837751	121	2.8	118	76	7	329	35	15	13	36	1.86
16838007--16838173	40	4.2	40	75	10	119	31	15	14	38	1.88
16837382--16838173	80	9.9	80	73	6	426	36	14	12	36	1.84
16840805--16840923	61	2.0	61	94	0	211	42	11	13	31	1.80
16840814--16840944	61	2.2	61	88	1	192	43	11	14	30	1.81
16842240--16842289	20	2.5	20	83	6	66	52	14	8	26	1.68
16842437--16842481	20	2.3	20	96	3	83	62	8	4	24	1.43
16842449--16842520	20	3.6	19	78	14	74	51	11	8	29	1.66
16843206--16843260	26	2.1	26	83	6	67	56	18	1	23	1.51
16843590--16843635	15	2.9	15	87	6	56	4	8	2	84	0.83
16843688--16843739	6	8.5	6	83	12	61	69	1	3	25	1.16
16843687--16843739	25	2.1	27	76	20	69	69	1	3	24	1.15
16844006--16844179	39	4.3	42	78	10	141	39	20	13	26	1.90
16844006--16844186	38	4.5	39	78	13	163	39	19	13	27	1.89
16844040--16844226	38	4.9	37	75	14	152	38	19	13	28	1.90
16844650--16844700	23	2.2	23	82	3	57	13	21	5	58	1.56
16845562--16845598	17	2.1	19	85	10	51	8	16	0	75	1.02
16846701--16846748	25	2.0	24	83	4	60	14	2	14	68	1.30
16846701--16846751	12	4.2	12	77	5	57	15	1	15	66	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16849674--16849705	16	2.0	16	93	0	55	31	15	6	46	1.71
16851158--16851195	15	2.6	14	92	8	67	5	26	15	52	1.64
16854395--16854497	19	5.3	18	77	17	75	55	9	6	28	1.58
16854427--16854474	20	2.5	19	86	6	62	50	12	8	29	1.69
16854552--16854624	18	4.2	17	76	10	67	75	1	4	19	1.04
16854557--16854625	7	9.6	7	76	7	59	76	1	4	17	1.02
16854558--16854644	39	2.2	39	80	13	99	74	3	5	16	1.14
16855112--16855153	15	2.8	16	82	7	52	50	30	0	19	1.48
16855646--16855736	6	14.8	6	91	4	128	68	4	0	27	1.09
16855645--16855736	31	3.0	31	88	0	148	68	4	0	27	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125