genome.fa.s46.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  3  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363604--363679	14	5.2	15	75	10	68	51	28	0	19	1.47
363832--363874	21	2.0	22	86	4	61	51	30	0	18	1.47
363899--363945	7	6.4	7	80	9	58	57	27	0	14	1.38
363863--363916	25	2.2	25	83	6	65	55	27	0	16	1.42
363858--363945	15	5.7	15	70	17	54	56	26	0	17	1.40
363899--363945	22	2.1	22	88	0	67	57	27	0	14	1.38
365577--365615	4	9.8	4	83	10	53	23	2	0	74	0.94
365582--365632	26	2.0	26	88	3	77	23	3	3	68	1.23
365583--365627	13	3.6	12	82	8	54	24	4	2	68	1.19
365569--365606	16	2.4	15	91	8	58	26	5	0	68	1.11
375334--375361	12	2.3	12	100	0	56	85	0	14	0	0.59
376802--377137	100	3.3	99	81	4	395	21	22	10	46	1.81
376753--377116	100	3.6	101	81	4	394	21	21	10	45	1.81
377054--377202	65	2.3	65	81	4	183	23	24	8	43	1.82
376940--377306	165	2.2	168	86	6	516	21	24	9	44	1.82
377118--377984	100	8.6	99	77	9	684	20	22	10	46	1.80
377181--377429	35	7.3	35	65	15	108	21	23	9	45	1.81
376818--377506	369	1.9	366	86	4	985	21	22	10	46	1.81
377118--377956	201	4.1	202	83	4	919	20	22	10	46	1.81
377654--377748	36	2.8	36	80	6	108	20	26	8	45	1.79
377118--377984	405	2.1	404	81	6	1008	20	22	10	46	1.80
377876--377952	34	2.2	35	81	9	95	18	22	9	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378362--378441	28	2.9	28	75	0	88	21	23	21	33	1.97
380080--380136	14	4.0	13	75	18	51	52	31	0	15	1.43
380191--380333	30	4.8	30	86	2	191	42	34	2	19	1.66
380065--380333	30	8.9	30	76	8	170	44	33	2	19	1.63
380379--380411	14	2.3	15	89	5	50	57	27	3	12	1.49
384549--384640	44	2.1	44	93	0	157	40	2	5	52	1.37
385351--385394	22	2.0	22	90	0	70	34	11	11	43	1.77
389249--389292	22	2.0	22	90	0	70	38	11	6	43	1.67
393911--393939	12	2.4	12	100	0	58	58	0	6	34	1.25
394445--394479	13	2.7	13	90	0	52	60	2	2	34	1.26
394511--394560	19	2.6	19	83	0	64	44	0	6	50	1.26
394956--394998	22	2.0	21	81	4	50	32	2	11	53	1.50
399517--399552	12	2.8	13	91	4	56	55	2	0	41	1.14
405905--406000	30	3.2	29	80	5	111	38	7	6	47	1.56
411344--411391	24	2.0	24	95	0	87	39	4	14	41	1.65
412314--412369	7	8.6	7	84	15	84	62	10	0	26	1.28
412314--412369	12	4.3	13	82	17	64	62	10	0	26	1.28
412314--412370	19	3.0	19	100	0	114	63	10	0	26	1.27
413644--413688	7	6.6	7	87	5	65	15	15	13	55	1.69
413637--413685	21	2.3	21	86	10	64	16	16	14	53	1.74
421428--421496	24	2.8	24	75	16	61	37	5	2	53	1.40
422171--422218	1	48.0	1	100	0	96	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423011--423068	9	6.6	9	74	18	50	51	0	1	46	1.11
423032--423112	16	5.0	15	71	19	56	49	1	2	46	1.23
423049--423138	15	5.7	15	69	21	51	53	2	2	42	1.25
423049--423128	19	4.6	18	75	17	62	52	1	2	43	1.22
423156--423557	13	27.5	15	70	22	213	42	0	1	54	1.17
423156--423551	18	21.9	18	71	20	129	42	1	1	54	1.17
423197--423473	129	2.1	134	86	5	386	41	1	2	54	1.21
423156--423576	41	10.0	41	74	16	346	42	0	1	54	1.16
424265--424311	20	2.4	19	79	10	51	44	8	4	42	1.54
425132--425176	11	3.9	11	86	11	63	13	0	28	57	1.36
426871--426938	34	2.0	34	100	0	136	29	14	14	41	1.86
428533--428582	20	2.5	20	83	6	66	40	0	2	58	1.10
428902--428952	20	2.5	20	76	17	52	54	1	1	41	1.22
428914--428957	22	2.0	22	86	8	63	56	0	2	40	1.11
429489--429743	72	3.6	69	78	8	246	45	5	8	40	1.57
429513--429742	69	3.2	70	80	9	236	46	5	7	40	1.55
429727--429774	24	2.0	24	84	4	62	56	6	8	29	1.53
429880--429967	43	2.0	43	86	4	124	51	4	10	34	1.56
430003--430073	37	1.9	37	91	0	115	43	5	1	49	1.35
436745--436823	41	2.0	37	81	13	88	55	1	3	39	1.26
440730--440764	1	35.0	1	94	0	61	0	2	0	97	0.19
440943--440987	24	2.0	22	87	12	65	48	17	15	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443560--443655	21	4.5	21	84	2	120	40	14	5	39	1.68
443558--443655	43	2.3	42	91	1	151	39	14	5	40	1.68
443622--443686	31	2.1	31	85	0	85	40	18	6	35	1.76
443652--443691	21	1.9	21	94	0	71	37	17	7	37	1.78
444048--444208	63	2.6	63	80	2	162	29	20	10	39	1.86
449209--449532	167	1.9	167	87	4	476	41	10	5	41	1.64
449767--449828	29	2.2	28	82	5	72	79	8	1	11	1.01
456415--456448	7	5.0	7	85	7	52	0	0	23	76	0.79
459835--460448	304	2.0	305	86	1	865	18	11	38	31	1.86
460725--460772	19	2.6	18	74	6	51	12	10	2	75	1.14
462257--462294	3	13.3	3	89	10	62	71	0	0	28	0.87
462468--462603	70	2.0	70	94	2	240	42	4	6	46	1.50
462678--462704	7	3.9	7	100	0	54	14	0	0	85	0.61
466945--466990	22	2.1	22	95	0	83	28	19	10	41	1.85
469855--470176	166	1.9	166	89	3	497	41	10	5	41	1.64
470412--470468	29	2.0	29	85	0	78	80	8	0	10	0.90
470434--470475	18	2.3	18	84	8	50	85	7	0	7	0.73
470412--470475	29	2.2	29	82	2	74	81	9	0	9	0.88
471209--471281	10	7.3	10	76	4	58	5	15	0	79	0.90
471239--471290	23	2.3	22	83	9	68	3	17	1	76	1.02
480517--481726	304	3.9	303	80	7	1412	18	11	37	32	1.86
480563--481818	629	2.0	629	97	0	2359	19	11	37	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482328--482371	20	2.1	21	83	4	54	47	4	6	40	1.50
483787--483921	70	1.9	70	91	4	220	40	4	5	49	1.47
485668--485813	56	2.6	56	95	0	256	26	8	16	47	1.76
488040--488242	67	3.0	69	89	5	315	41	6	5	45	1.55
493507--493542	15	2.5	14	86	8	54	41	19	0	38	1.52
493515--493545	15	2.1	15	100	0	62	38	25	0	35	1.56
497590--497635	22	2.2	22	88	7	69	43	13	6	36	1.69
497601--497645	22	2.1	22	88	12	67	44	13	4	37	1.64
503727--503778	13	3.8	13	80	9	68	28	1	0	69	0.99
503727--503777	7	7.4	7	78	12	61	29	1	0	68	1.00
503728--503784	28	2.0	29	96	0	91	31	1	0	66	1.02
507539--507573	15	2.2	16	95	5	63	71	0	0	28	0.86
508633--508687	23	2.6	21	78	21	69	54	0	5	40	1.23
508633--508685	22	2.4	22	84	6	72	56	0	5	37	1.23
513064--513310	130	1.9	128	84	3	325	58	10	4	27	1.50
517218--517248	14	2.2	14	94	0	53	29	12	6	51	1.65
518286--518311	13	2.0	13	100	0	52	23	7	0	69	1.14
519213--519254	20	2.1	20	86	0	57	16	42	0	40	1.48
520952--521222	139	2.0	137	79	6	296	40	14	14	31	1.85
521264--521440	44	4.0	43	71	7	131	26	10	27	35	1.89
522632--522666	12	2.8	13	86	8	54	77	2	0	20	0.90
523043--523107	31	2.1	31	85	0	85	58	12	9	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523447--523546	7	14.3	7	71	13	55	75	4	4	17	1.12
523437--523526	23	3.7	24	72	17	69	73	4	3	18	1.15
523799--524136	41	8.2	41	79	7	328	43	20	13	23	1.86
523799--524093	81	3.6	80	79	9	292	44	20	13	22	1.86
523851--524136	126	2.3	127	81	6	325	44	19	12	23	1.85
523806--524132	85	3.9	83	79	6	297	42	20	13	23	1.88
524360--524428	23	3.0	23	86	2	102	34	11	13	40	1.80
524444--524497	20	2.6	19	77	13	54	40	16	11	31	1.84
524553--524626	21	3.5	21	88	1	103	40	17	2	39	1.64
524576--524629	22	2.5	22	87	3	74	38	18	7	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125