genome.fa.s46.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  96  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18700126--18700155	8	3.6	8	95	4	51	86	0	0	13	0.57
18705617--18705653	2	20.0	2	84	15	53	48	0	0	51	1.00
18707304--18707348	18	2.4	18	85	3	63	53	0	0	46	1.00
18712398--18712446	9	5.4	9	85	4	64	77	2	20	0	0.87
18712413--18712447	11	3.4	11	88	11	56	77	0	22	0	0.78
18712404--18712448	20	2.3	19	88	7	72	77	2	20	0	0.87
18712974--18713021	25	1.9	25	95	0	87	16	20	8	54	1.68
18713615--18713688	11	6.8	11	78	1	78	78	0	16	5	0.93
18714036--18714091	20	2.7	21	86	5	69	76	1	10	10	1.09
18714071--18714104	12	2.8	12	86	0	50	73	0	11	14	1.10
18714825--18714883	22	2.7	21	89	10	91	37	23	15	23	1.93
18715209--18715298	33	2.8	33	77	3	94	34	15	16	33	1.91
18715494--18715610	35	3.3	35	76	5	112	20	21	10	47	1.79
18715839--18715903	1	65.0	1	84	0	76	90	4	3	1	0.58
18715839--18715903	20	3.2	20	84	6	87	90	4	3	1	0.58
18716076--18716103	3	9.3	3	100	0	56	67	0	0	32	0.91
18717007--18717189	22	8.1	22	75	12	140	38	4	7	48	1.53
18717007--18717156	65	2.2	69	82	11	177	38	5	6	49	1.52
18717078--18717223	11	13.5	11	67	12	52	40	4	4	50	1.45
18717259--18717310	22	2.4	21	87	9	77	32	3	5	57	1.40
18717491--18717532	22	1.9	22	85	9	59	38	4	4	52	1.44
18718039--18718143	22	4.8	22	79	6	106	37	4	10	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18718187--18718231	22	2.0	22	87	8	65	33	6	6	53	1.53
18718409--18718525	43	2.7	43	78	4	110	36	8	5	49	1.56
18718477--18718540	22	3.0	22	81	6	69	42	7	1	48	1.41
18718433--18718525	43	2.1	44	84	2	116	36	9	4	49	1.55
18718597--18718943	22	16.0	22	66	13	87	35	8	5	50	1.56
18718604--18718720	61	1.9	61	82	0	144	40	8	3	47	1.51
18718659--18718766	44	2.5	44	80	3	110	41	8	4	45	1.55
18718823--18718940	44	2.7	44	81	5	123	34	6	5	53	1.50
18718843--18718992	66	2.3	66	83	5	180	34	9	6	50	1.59
18718843--18718985	22	6.6	21	74	9	117	33	9	6	50	1.61
18722006--18722063	17	3.4	17	79	13	66	41	1	5	51	1.34
18725923--18726058	60	2.2	60	85	6	175	27	51	6	13	1.66
18725897--18726062	60	2.6	64	75	13	171	28	49	6	16	1.69
18730189--18730229	13	3.2	13	86	3	57	63	2	24	9	1.37
18735822--18735854	13	2.5	13	95	0	57	15	0	33	51	1.43
18737126--18737186	26	2.5	25	76	7	63	32	4	13	49	1.63
18740450--18740477	11	2.5	11	100	0	56	14	7	0	78	0.95
18743201--18743317	39	3.0	39	98	0	225	30	8	15	45	1.76
18750961--18750999	20	2.0	20	85	10	53	41	0	2	56	1.13
18752370--18752444	17	4.3	17	72	16	64	42	12	6	38	1.68
18752383--18752449	34	2.0	34	82	5	82	38	14	7	38	1.75
18752595--18752701	12	8.7	13	71	25	74	61	0	0	37	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18752570--18752700	35	3.8	34	73	16	92	60	0	0	38	1.08
18752598--18752701	10	10.9	10	71	19	71	61	0	0	37	1.03
18753058--18753087	2	15.0	2	100	0	60	50	0	0	50	1.00
18754378--18754420	21	2.0	21	86	0	59	20	55	0	23	1.43
18754391--18754535	42	3.4	43	76	6	143	23	44	4	28	1.72
18754385--18754542	45	3.5	45	75	7	160	23	44	4	27	1.72
18754390--18754570	87	2.0	85	81	13	204	23	43	4	28	1.73
18754452--18754577	45	2.7	45	74	8	119	23	44	4	26	1.73
18754589--18754652	30	2.1	30	85	0	83	23	45	3	28	1.68
18754766--18754951	48	3.9	48	74	2	176	24	46	2	26	1.66
18754712--18754951	96	2.5	94	80	4	230	23	46	3	26	1.68
18756274--18756359	41	2.0	43	91	4	140	40	12	10	36	1.78
18758661--18758713	19	2.8	19	85	0	70	39	18	9	32	1.83
18761164--18761210	23	2.0	23	84	8	60	68	0	6	25	1.13
18762624--18762649	5	5.2	5	100	0	52	42	38	19	0	1.51
18762785--18762830	12	3.9	12	77	11	51	17	2	4	76	1.06
18762774--18762830	23	2.5	22	77	11	60	19	1	3	75	1.04
18765945--18766503	39	14.2	40	76	9	395	26	11	19	42	1.85
18765985--18766503	79	6.6	76	77	8	373	26	11	18	42	1.84
18765947--18766503	118	4.7	117	82	5	545	26	11	19	42	1.85
18765941--18766494	197	2.8	196	84	3	670	25	11	19	42	1.85
18766681--18766722	3	14.7	3	85	5	52	30	0	2	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18766972--18767018	21	2.2	21	85	7	60	76	14	6	2	1.08
18767142--18767252	51	2.2	51	84	9	138	29	13	19	36	1.90
18767586--18767618	3	11.7	3	87	12	52	30	0	0	69	0.88
18770617--18770672	29	1.9	29	81	0	67	39	1	7	51	1.40
18771852--18771968	61	1.9	61	89	0	180	35	14	10	39	1.80
18775325--18775896	30	19.1	30	84	0	658	25	6	41	26	1.79
18777593--18777653	18	3.3	19	75	9	54	57	1	0	40	1.08
18785616--18785781	60	2.8	60	77	2	163	40	19	5	34	1.75
18787102--18787141	20	1.9	22	90	10	66	47	0	0	52	1.00
18787102--18787155	19	2.7	20	80	13	58	44	0	1	53	1.11
18788512--18788586	17	4.3	17	75	16	73	42	10	6	40	1.66
18788525--18788591	34	2.0	34	85	5	91	38	13	7	40	1.73
18788747--18788853	12	8.7	13	71	25	74	61	0	0	36	1.09
18788722--18788852	35	3.8	34	73	16	92	60	0	1	37	1.12
18788750--18788853	10	10.9	10	70	19	71	61	0	0	36	1.09
18789008--18789037	14	2.1	15	93	6	53	90	3	6	0	0.56
18789221--18789249	2	15.0	2	92	7	51	51	0	0	48	1.00
18789220--18789246	13	2.1	13	100	0	54	55	0	0	44	0.99
18790538--18790580	21	2.0	21	90	0	68	20	58	0	20	1.40
18790545--18790701	45	3.5	45	74	7	158	23	45	3	27	1.70
18790545--18790734	45	4.2	46	72	15	153	23	45	4	27	1.71
18790550--18790730	87	2.0	85	81	13	204	23	44	4	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18790547--18790737	48	4.2	45	73	10	120	23	45	4	26	1.71
18790749--18790812	30	2.1	30	85	0	83	23	45	3	28	1.68
18790872--18790983	48	2.3	48	74	19	108	22	50	2	25	1.62
18790907--18791111	48	4.3	48	73	3	171	24	46	2	25	1.66
18790872--18791111	96	2.5	94	80	4	239	23	46	3	26	1.68
18796527--18796574	17	3.1	14	75	18	51	81	4	0	14	0.84
18796526--18796574	25	2.1	23	85	11	64	81	4	0	14	0.83
18796978--18797012	3	11.7	3	100	0	70	34	0	31	34	1.58
18797011--18797108	3	32.7	3	100	0	196	33	32	0	33	1.58
18797380--18797429	21	2.6	18	79	17	55	72	0	6	22	1.07
18799047--18799098	23	2.3	23	83	6	61	75	1	3	19	1.06
18802029--18802126	40	2.5	40	91	1	153	24	14	18	42	1.87
18801959--18802514	118	4.7	117	83	5	611	25	12	19	41	1.87
18801953--18802505	196	2.8	195	83	3	673	25	12	19	41	1.87
18801958--18802514	236	2.4	235	82	4	685	26	12	19	41	1.87
18801957--18802514	39	14.2	39	76	6	448	25	12	19	41	1.87
18802705--18802734	6	5.0	6	91	0	51	46	0	0	53	1.00
18802980--18803029	25	2.0	24	88	3	73	78	14	6	2	1.03
18806639--18806694	29	1.9	29	81	0	67	39	1	7	51	1.40
18810520--18810571	2	26.5	2	88	3	52	44	1	7	46	1.43
18811334--18812085	90	8.4	90	82	1	825	25	6	40	27	1.79
18811334--18812085	30	25.3	30	82	3	739	25	6	40	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18815187--18815228	10	4.1	10	84	3	57	47	0	0	52	1.00
18815190--18815236	20	2.4	20	86	10	62	53	0	0	46	1.00
18815195--18815240	22	2.2	20	84	7	56	58	0	0	41	0.98
18817344--18817378	3	11.7	3	87	0	52	40	0	0	60	0.97
18817343--18817384	12	3.5	12	83	0	57	40	0	2	57	1.12
18817468--18817531	27	2.3	28	84	7	87	48	0	1	50	1.10
18821403--18821459	29	1.9	30	82	3	71	38	1	7	52	1.39
18825300--18825339	2	20.0	2	89	0	62	50	5	0	45	1.23
18826121--18826874	90	8.4	90	82	2	811	25	6	40	27	1.79
18826121--18826874	30	25.3	30	81	4	727	25	6	40	27	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125