genome.fa.s46.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  49  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9790423--9791795	693	2.0	664	84	8	1708	39	7	6	45	1.60
9793588--9793631	15	3.0	14	83	9	61	36	2	0	61	1.09
9793585--9793666	30	2.7	31	78	12	98	39	2	2	56	1.26
9793645--9793711	30	2.2	29	81	7	71	53	2	0	43	1.16
9795615--9795653	7	5.4	7	84	3	51	53	0	2	43	1.14
9797699--9797967	61	4.4	60	82	5	310	33	13	6	46	1.69
9797699--9797966	121	2.2	120	87	3	369	33	13	6	46	1.68
9800219--9800491	85	3.2	86	80	5	313	48	12	17	21	1.80
9800790--9800864	17	4.4	17	70	6	53	33	4	20	42	1.70
9800759--9800861	51	2.0	51	81	7	120	33	7	16	41	1.77
9800931--9800963	17	1.9	17	100	0	66	51	12	12	24	1.73
9802199--9802236	20	1.9	20	88	0	58	5	18	0	76	0.97
9806252--9806569	59	5.4	59	81	7	337	33	12	6	46	1.69
9806252--9806615	59	6.2	58	77	9	316	33	12	7	46	1.69
9806678--9806715	19	2.0	19	89	0	58	65	7	13	13	1.46
9814816--9814857	20	2.0	22	86	9	61	54	0	0	45	0.99
9815319--9815343	13	1.9	13	100	0	50	8	0	4	88	0.64
9817347--9817386	18	2.3	17	86	4	53	25	2	0	72	0.97
9829987--9830025	16	2.4	16	86	4	51	41	0	7	51	1.31
9829899--9830406	119	4.3	115	90	5	777	35	13	8	42	1.74
9829899--9830406	58	8.7	58	85	5	675	35	13	8	42	1.74
9842680--9842705	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9851620--9851658	19	2.1	19	100	0	78	35	20	5	38	1.75
9853165--9853222	17	3.2	18	80	14	75	34	0	0	65	0.93
9853178--9853241	25	2.5	25	80	12	69	32	1	0	65	1.02
9854972--9855046	19	3.9	19	98	0	141	16	14	42	26	1.86
9854955--9855041	8	9.8	8	72	20	57	17	13	41	27	1.87
9854975--9855048	10	7.7	10	72	24	70	16	14	41	27	1.87
9857876--9857914	8	5.4	8	80	20	50	12	0	7	79	0.93
9857880--9857908	13	2.2	13	100	0	58	13	0	6	79	0.93
9857876--9857914	21	1.9	20	94	5	69	12	0	7	79	0.93
9858002--9858090	27	3.2	27	64	25	67	41	6	13	38	1.71
9857994--9858458	117	3.8	118	86	9	593	45	7	13	33	1.72
9858118--9858207	27	3.2	27	62	20	67	42	5	14	37	1.69
9857994--9858458	57	7.7	58	82	11	491	45	7	13	33	1.72
9861915--9861953	8	4.8	8	84	15	53	87	0	2	10	0.65
9861915--9861952	9	4.3	9	93	3	60	89	0	2	7	0.57
9861915--9861953	17	2.4	16	91	4	60	87	0	2	10	0.65
9863556--9864214	41	15.9	42	87	7	904	23	16	21	37	1.93
9863556--9864214	82	8.0	83	94	2	1046	23	16	21	37	1.93
9864223--9864319	1	97.0	1	76	0	68	85	7	0	7	0.74
9864223--9864320	14	7.0	14	80	9	92	84	7	0	8	0.77
9864225--9864320	29	3.2	29	81	11	104	84	7	0	8	0.78
9865196--9865239	20	2.2	20	87	0	61	31	31	27	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9865609--9865673	6	9.4	7	81	17	50	10	1	3	84	0.80
9865823--9865911	27	3.2	27	64	25	67	41	6	13	38	1.71
9865754--9866215	118	3.9	119	88	7	647	45	8	13	33	1.73
9865941--9866029	27	3.2	27	62	20	65	41	5	14	38	1.70
9865753--9866227	184	2.6	180	86	8	603	46	8	12	32	1.72
9865749--9866215	241	1.9	235	86	9	651	44	8	13	33	1.73
9870698--9870750	20	2.7	20	81	0	70	52	0	1	45	1.11
9876533--9876563	3	10.3	3	100	0	62	35	0	0	64	0.94
9884816--9884992	3	57.3	3	71	19	93	29	1	5	63	1.23
9885435--9885493	31	1.9	31	85	0	82	28	23	22	25	1.99
9885548--9885594	19	2.5	19	85	0	67	27	29	19	23	1.98
9885915--9885940	1	26.0	1	100	0	52	0	0	0	100	0.00
9885915--9885965	9	5.3	10	80	2	52	9	0	3	86	0.70
9885991--9886438	152	3.0	151	91	4	735	29	14	17	37	1.90
9889697--9889730	1	34.0	1	87	0	50	94	0	5	0	0.32
9890106--9890175	19	3.7	20	73	9	74	74	0	18	7	1.04
9891362--9892090	41	18.0	39	86	9	891	22	16	21	39	1.92
9891362--9892090	122	6.0	118	85	10	904	22	16	21	39	1.92
9891362--9892090	83	9.0	81	87	7	963	22	16	21	39	1.92
9892099--9892192	17	5.6	16	81	9	100	85	6	0	8	0.75
9892098--9892192	16	6.1	15	80	12	95	85	6	0	8	0.75
9892099--9892169	9	8.6	8	83	14	83	87	7	0	5	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9892098--9892179	1	82.0	1	77	0	65	86	6	0	7	0.70
9892097--9892192	32	2.9	33	86	6	124	84	7	0	8	0.78
9892365--9892538	3	56.3	3	71	20	87	29	1	5	63	1.23
9892981--9893039	31	1.9	31	85	0	82	28	23	22	25	1.99
9893094--9893140	19	2.5	19	85	0	67	27	29	19	23	1.98
9893366--9893407	14	3.1	15	80	19	56	7	42	21	28	1.79
9893366--9893402	13	2.7	14	80	20	51	8	43	24	24	1.81
9893472--9893498	10	2.7	10	100	0	54	14	0	7	77	0.97
9893454--9893478	1	25.0	1	100	0	50	0	0	0	100	0.00
9893454--9893504	10	5.3	10	88	2	52	9	0	3	86	0.70
9893531--9893980	152	3.0	152	95	1	812	29	14	17	38	1.90
9902326--9902358	15	2.1	16	88	5	50	0	12	0	87	0.53
9901838--9902572	363	2.0	357	91	3	1206	39	11	15	32	1.84
9902940--9902987	21	2.2	21	88	3	69	37	0	6	56	1.25
9903728--9903757	8	3.6	8	95	4	51	23	0	0	76	0.78
9904331--9904391	33	1.9	33	86	6	90	9	18	8	63	1.48
9906123--9906151	12	2.5	12	94	5	51	55	6	0	37	1.27
9911101--9911230	65	2.0	65	100	0	260	50	3	9	36	1.50
9912962--9913614	223	3.0	216	79	8	629	54	8	11	25	1.64
9918570--9918626	22	2.5	22	83	8	62	40	17	17	24	1.91
9925428--9925461	18	1.9	18	88	5	52	50	0	14	35	1.44
9926545--9926569	13	1.9	13	100	0	50	36	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9927355--9927388	14	2.2	16	90	10	54	20	5	2	70	1.21
9934004--9934053	3	16.7	3	95	0	91	0	34	2	64	1.05
9943474--9943512	14	2.7	14	88	4	51	53	0	0	46	1.00
9945675--9945723	17	2.8	18	84	6	64	16	6	2	75	1.09
9946667--9946734	27	2.8	24	77	16	68	20	2	5	70	1.21
9946672--9946732	27	2.4	25	78	10	77	19	3	4	72	1.18
9946706--9946777	38	1.9	38	83	8	94	16	4	1	77	0.99
9946722--9946783	10	6.1	10	75	17	56	17	3	0	79	0.87
9946717--9946790	20	3.8	19	77	22	75	17	4	0	78	0.90
9946731--9946788	28	2.1	28	81	12	66	18	5	0	75	0.98
9946819--9947750	57	15.7	58	84	9	1165	45	7	13	34	1.72
9946818--9947748	237	3.9	233	87	8	1262	45	7	13	34	1.71
9960771--9960795	9	2.8	9	100	0	50	88	0	0	12	0.53
9971467--9971502	11	3.5	11	85	14	58	63	0	8	27	1.23
9974707--9974906	96	2.1	97	93	1	341	32	1	6	60	1.29
9981400--9981434	18	1.9	18	94	0	61	45	22	5	25	1.74
9983867--9983914	7	6.6	7	79	9	51	16	0	35	47	1.47
9983905--9984035	28	4.6	29	74	13	94	21	1	29	47	1.60
9983923--9984057	14	9.5	14	67	12	69	20	0	29	48	1.55
9983928--9984067	28	4.9	28	78	11	131	22	0	28	48	1.55
9983923--9983972	13	3.6	13	76	12	55	20	0	32	48	1.50
9983925--9984095	86	2.0	86	89	3	263	22	1	28	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9984376--9984417	3	14.0	3	94	0	75	66	2	0	30	1.04
9984416--9984447	3	10.7	3	93	0	55	31	0	3	65	1.08
9985642--9985682	21	2.0	21	85	9	57	9	2	4	82	0.89
9985650--9985678	12	2.3	13	94	5	51	10	0	6	82	0.83
9986040--9986116	38	2.1	38	85	7	104	55	16	11	15	1.68
9986202--9986278	22	3.5	22	75	8	75	33	12	20	32	1.91
9986240--9986295	23	2.5	23	82	2	60	30	14	23	32	1.94
9986505--9986554	21	2.3	21	89	3	82	44	14	12	30	1.81
9986505--9986567	22	2.9	22	83	9	85	41	14	15	28	1.87
9986505--9986567	21	2.9	21	83	4	81	41	14	15	28	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125