genome.fa.s46.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  78  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15657033--15657093	32	1.9	32	100	0	122	40	6	6	45	1.56
15665152--15665210	18	3.0	21	73	19	63	33	10	1	54	1.44
15669368--15669403	5	7.2	5	96	0	63	0	58	0	41	0.98
15676873--15676912	11	3.5	11	83	6	53	65	10	0	25	1.24
15676863--15676917	23	2.3	23	87	6	74	67	7	3	21	1.31
15678004--15678043	16	2.5	16	83	0	53	55	20	5	20	1.62
15678015--15678048	16	2.1	16	88	0	50	50	20	8	20	1.75
15678299--15678328	2	15.5	2	93	6	53	50	0	0	50	1.00
15678472--15678502	2	15.5	2	100	0	62	48	0	0	51	1.00
15684835--15684897	25	2.3	25	84	13	72	57	1	4	36	1.30
15685923--15685964	22	1.9	22	85	0	57	85	4	4	4	0.82
15688484--15688543	29	2.1	29	87	0	84	46	3	3	46	1.35
15688898--15688947	22	2.3	22	82	6	57	32	2	4	62	1.25
15688913--15688956	16	3.1	14	81	15	54	36	2	0	61	1.09
15688913--15688956	23	1.9	23	86	9	63	36	2	0	61	1.09
15690096--15690161	26	2.6	25	90	7	98	36	4	3	56	1.35
15690096--15690169	26	2.8	26	87	4	96	39	5	2	52	1.38
15702233--15702260	11	2.5	11	100	0	56	17	0	0	82	0.68
15708014--15708048	16	2.2	16	89	0	52	54	8	0	37	1.31
15709335--15709365	2	15.5	2	93	0	53	48	0	3	48	1.17
15711607--15711852	18	12.7	18	70	20	142	55	1	2	40	1.21
15711607--15711846	23	10.7	23	65	23	86	55	1	2	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15711655--15711748	41	2.3	41	86	0	125	55	1	3	40	1.23
15711677--15711839	41	4.0	40	74	13	134	54	1	1	42	1.19
15711764--15711846	13	6.7	13	74	19	54	56	0	2	40	1.12
15711718--15711851	33	4.2	33	77	13	136	55	0	1	41	1.14
15711679--15711852	63	2.8	62	76	14	180	55	1	1	41	1.17
15711893--15711954	33	2.0	30	84	9	79	48	1	1	48	1.21
15711944--15711993	26	2.0	25	92	4	82	48	2	2	48	1.24
15713026--15714913	234	8.0	232	73	9	960	32	11	6	50	1.62
15725726--15725770	22	2.0	22	87	8	65	68	2	0	28	1.01
15729022--15729072	17	3.0	17	80	11	68	27	0	7	64	1.21
15732209--15732308	19	5.4	19	71	15	84	77	5	2	16	1.04
15732213--15732289	13	5.7	14	72	17	56	75	6	1	16	1.08
15733127--15733199	18	3.9	18	78	7	58	56	5	2	35	1.37
15733158--15733264	3	39.7	3	70	20	76	58	1	1	37	1.20
15733145--15733270	5	23.8	5	75	10	108	57	3	2	37	1.28
15733145--15733264	48	2.5	48	98	0	231	57	3	1	37	1.25
15733491--15733739	56	4.5	56	68	12	170	38	14	22	24	1.91
15733715--15733892	57	3.2	57	77	4	146	37	12	24	26	1.91
15736978--15737589	298	2.0	299	95	0	1109	28	19	17	35	1.94
15745477--15745565	20	4.4	19	77	12	70	76	3	4	15	1.08
15745493--15745560	11	6.5	10	73	13	57	79	2	1	16	0.93
15745501--15745551	14	3.5	14	76	10	57	78	3	0	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15745477--15745557	5	15.6	5	70	20	51	75	3	3	17	1.10
15746350--15746502	3	53.0	3	74	14	126	60	2	4	32	1.31
15746434--15746500	5	12.8	5	75	9	62	59	1	4	34	1.26
15763857--15764281	213	2.0	214	91	0	699	23	9	15	51	1.72
15767024--15767087	32	2.1	30	83	11	78	34	9	25	31	1.87
15768532--15768566	14	2.5	14	90	0	52	62	17	0	20	1.32
15771102--15771150	10	5.0	10	72	22	50	34	22	0	42	1.54
15771128--15771289	80	2.0	79	89	3	245	40	14	12	31	1.84
15771468--15771966	133	3.8	132	80	8	559	38	10	9	41	1.72
15772568--15772619	8	6.9	7	79	14	50	1	11	3	82	0.88
15775575--15775681	51	2.1	51	91	5	173	28	12	13	46	1.78
15775714--15775766	20	2.7	19	82	8	61	45	30	5	18	1.73
15775765--15775815	20	2.6	19	81	9	66	47	35	0	17	1.48
15775698--15775869	73	2.4	73	79	9	174	44	33	2	19	1.65
15777615--15777640	9	2.9	9	100	0	52	80	19	0	0	0.71
15777883--15778128	37	6.6	37	82	0	276	33	19	9	36	1.84
15780545--15780588	20	2.2	20	87	0	61	47	13	11	27	1.77
15781620--15781752	66	2.0	65	95	4	241	21	15	11	52	1.73
15782660--15782783	7	18.4	7	74	12	91	43	37	3	16	1.64
15782657--15782735	27	2.9	29	75	11	85	44	36	2	16	1.61
15782687--15782778	33	2.7	34	78	20	104	41	36	4	17	1.69
15782673--15782797	33	3.7	33	73	15	87	42	36	4	17	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15783308--15783350	20	2.1	20	82	4	50	74	0	9	16	1.06
15783888--15783992	50	2.1	50	89	7	160	25	11	7	55	1.62
15783888--15783992	25	4.2	25	86	2	140	25	11	7	55	1.62
15786921--15787168	41	6.1	40	75	4	190	29	16	13	39	1.88
15787446--15787577	49	2.7	48	80	5	122	31	21	12	33	1.92
15790883--15790935	9	5.9	9	73	8	54	26	3	1	67	1.17
15790900--15790949	8	6.0	8	79	6	55	30	2	0	68	1.01
15794282--15794567	57	4.9	57	71	9	159	40	18	15	25	1.89
15794794--15794879	32	2.7	33	80	5	113	39	9	16	34	1.80
15796875--15796931	23	2.4	23	82	2	69	21	19	8	50	1.74
15804948--15804988	20	2.2	18	86	8	55	14	2	36	46	1.58
15804946--15805052	32	3.4	32	71	23	77	16	0	34	47	1.53
15805067--15805152	20	4.3	20	78	8	104	16	0	34	48	1.46
15805015--15805148	59	2.3	59	84	5	164	17	0	29	52	1.50
15805067--15805167	39	2.6	40	82	4	127	16	0	34	48	1.47
15805409--15805518	18	5.8	19	77	17	79	16	3	37	42	1.66
15805531--15805766	117	2.0	117	95	1	420	48	14	11	25	1.77
15807066--15807339	143	1.9	143	83	3	354	42	12	13	31	1.81
15807022--15807562	144	3.8	142	77	7	409	41	12	14	31	1.83
15809245--15809752	144	3.5	142	79	5	454	33	12	13	40	1.82
15811256--15811366	19	5.5	19	77	12	98	47	31	1	18	1.59
15811231--15811310	37	2.2	35	84	8	108	45	35	1	18	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15811326--15811396	30	2.3	30	85	2	88	52	30	0	16	1.45
15816123--15816170	7	7.3	7	82	13	50	31	0	0	68	0.90
15816139--15816181	17	2.5	17	85	11	61	30	2	0	67	1.03
15816082--15816348	136	2.0	133	92	3	448	35	7	7	50	1.58
15816252--15816306	17	3.2	17	80	14	60	29	0	0	70	0.87
15816279--15816326	14	3.1	16	82	14	64	29	0	2	68	1.01
15818991--15819160	85	2.0	85	98	0	331	32	11	19	36	1.88
15823013--15823055	19	2.4	17	80	7	50	6	11	4	76	1.13
15824041--15824083	8	5.2	8	78	15	52	25	4	0	69	1.07
15825177--15825207	16	2.0	16	93	6	55	12	38	3	45	1.59
15834032--15834930	357	2.5	356	84	3	1180	36	16	12	34	1.86
15842661--15842805	57	2.6	56	87	2	191	39	15	5	39	1.71
15842811--15842840	8	3.8	8	100	0	60	23	10	0	66	1.21
15845390--15845476	41	2.1	41	93	0	147	39	17	18	25	1.92
15845491--15845756	97	2.7	98	87	3	381	34	15	12	37	1.85
15845744--15845883	41	3.6	41	77	11	139	40	20	14	25	1.90
15845741--15845883	76	1.9	76	89	0	223	39	20	14	24	1.91
15846098--15846207	54	2.1	54	81	5	125	33	20	13	32	1.91
15847709--15847770	26	2.5	25	77	12	65	6	12	0	80	0.89
15848100--15848127	11	2.5	11	100	0	56	0	7	0	92	0.37
15854963--15855001	13	2.9	14	80	7	53	64	2	10	23	1.37
15857697--15858036	166	2.0	166	90	1	529	40	17	12	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15860178--15860231	26	2.0	26	82	7	63	51	11	11	25	1.70
15863144--15863184	21	1.9	22	90	5	66	75	0	14	9	1.04
15864081--15864283	104	2.0	104	79	4	223	18	12	13	54	1.70
15864183--15864351	69	2.4	71	78	5	184	18	16	11	53	1.73
15864109--15864345	104	2.3	104	78	10	245	18	13	13	54	1.71
15864039--15864399	35	10.5	35	68	10	143	19	14	13	52	1.73
15864328--15864391	33	1.9	33	87	0	92	20	18	12	48	1.80
15864601--15864679	36	2.2	36	82	4	99	15	13	15	55	1.69
15864805--15864943	35	4.0	35	75	0	125	16	17	12	53	1.73
15865332--15865376	10	4.4	10	85	2	63	37	17	13	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125