genome.fa.s46.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  73  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14567583--14567616	4	8.2	4	87	6	50	23	5	0	70	1.09
14568079--14568113	17	2.1	17	89	5	54	57	5	2	34	1.37
14574076--14574118	17	2.6	16	81	7	50	76	0	6	16	0.99
14579024--14579061	19	2.1	18	85	14	51	71	10	0	18	1.14
14580388--14580442	13	4.4	12	82	8	65	18	5	25	50	1.67
14580388--14580442	25	2.2	25	83	6	67	18	5	25	50	1.67
14580397--14580448	13	4.1	12	82	9	50	19	3	25	51	1.63
14582055--14582307	121	2.1	121	86	2	346	10	24	7	57	1.58
14582760--14582796	3	12.3	3	100	0	74	32	0	0	67	0.91
14585667--14585722	28	2.0	28	100	0	112	39	10	17	32	1.84
14592227--14592266	20	2.0	20	100	0	80	45	25	5	25	1.73
14592232--14592276	20	2.4	18	85	14	56	44	28	4	22	1.72
14626747--14626780	15	2.1	17	89	10	54	44	17	14	23	1.86
14628176--14628207	16	1.9	17	93	6	57	59	6	21	12	1.55
14633689--14633748	22	2.7	21	73	14	50	58	5	20	16	1.56
14658859--14658902	21	2.0	22	91	4	72	68	6	11	13	1.39
14662376--14662542	85	2.0	85	97	0	316	35	15	8	40	1.78
14662824--14662872	20	2.5	20	80	6	64	79	4	6	10	1.03
14663639--14663721	42	2.0	42	90	0	130	45	15	9	28	1.78
14665920--14666095	87	2.0	87	93	0	298	19	7	15	57	1.62
14676098--14676483	209	1.8	209	89	4	609	33	12	14	39	1.84
14683713--14683860	63	2.4	63	84	5	176	37	12	10	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14684330--14684422	10	9.2	10	77	10	91	59	8	1	31	1.35
14684330--14684422	40	2.3	40	81	9	109	59	8	1	31	1.35
14684554--14684612	27	2.2	27	84	0	73	35	3	3	57	1.32
14684702--14684734	9	3.6	9	95	4	57	63	0	0	36	0.95
14684748--14684779	9	3.6	9	95	0	55	28	0	9	62	1.26
14684774--14684863	20	4.8	18	78	14	94	36	1	3	58	1.22
14684672--14684872	18	10.8	18	71	15	79	40	0	5	52	1.33
14684902--14684942	19	2.3	18	87	8	57	21	0	19	58	1.39
14684902--14684952	20	2.7	19	85	8	61	25	0	15	58	1.37
14684887--14684956	28	2.4	28	76	9	70	32	0	15	51	1.44
14687068--14687109	21	2.0	22	85	4	59	54	9	16	19	1.69
14698891--14698957	32	2.0	34	88	5	102	37	17	19	25	1.94
14708908--14708946	20	2.0	20	85	10	53	58	5	10	25	1.51
14720669--14720708	18	2.2	18	86	0	53	17	0	32	50	1.47
14720570--14720699	7	20.1	7	68	18	50	16	0	35	48	1.46
14720827--14720871	19	2.4	19	80	0	54	17	4	40	37	1.70
14720911--14721004	49	1.9	49	85	8	129	47	8	17	26	1.75
14722692--14722731	20	2.0	20	100	0	80	30	25	20	25	1.99
14722990--14723035	10	4.6	10	86	0	56	23	10	17	47	1.79
14727376--14727438	31	2.0	31	96	0	117	31	17	11	39	1.85
14729577--14729611	12	2.8	13	86	4	54	68	8	8	14	1.38
14729562--14729699	74	1.9	74	90	3	224	50	6	18	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14729873--14729915	21	2.0	22	86	13	63	65	4	11	18	1.42
14731580--14731842	144	1.8	141	80	8	316	33	14	12	40	1.82
14733237--14733292	24	2.3	25	87	3	78	42	35	3	17	1.67
14733237--14733289	25	2.1	25	86	6	72	39	37	3	18	1.69
14733348--14733427	7	11.6	7	74	15	60	47	33	1	17	1.56
14733357--14733457	41	2.6	40	82	13	113	46	36	1	14	1.56
14736252--14736288	20	1.9	20	88	5	58	29	0	5	64	1.15
14736805--14736838	16	2.2	16	89	5	52	82	11	2	2	0.89
14739264--14739374	19	5.5	21	72	16	58	73	0	20	4	1.06
14739293--14739353	4	14.8	4	74	19	54	70	0	22	6	1.10
14739303--14739364	26	2.3	27	84	10	83	72	0	22	4	1.03
14739338--14739375	17	2.2	18	86	13	53	73	2	23	0	0.95
14741213--14741262	23	2.2	24	78	10	59	60	8	10	22	1.55
14741221--14741269	23	2.1	23	88	0	71	57	8	12	22	1.61
14741721--14741992	134	2.0	134	90	1	429	41	19	11	27	1.85
14742298--14742358	32	1.9	32	100	0	122	24	4	18	52	1.65
14742727--14742757	16	1.9	16	93	0	53	54	12	12	19	1.70
14742718--14742775	19	3.2	19	73	14	68	53	8	10	27	1.64
14744065--14744254	7	27.4	7	67	14	56	47	32	2	17	1.61
14744047--14744106	25	2.4	26	91	5	97	45	31	3	20	1.67
14744244--14744289	14	3.4	14	75	19	53	43	34	0	21	1.53
14749771--14749856	43	2.0	43	86	6	120	39	15	10	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14750113--14750378	22	12.1	22	70	7	96	31	16	19	31	1.94
14750169--14750313	44	3.3	44	73	9	136	30	14	21	33	1.93
14750193--14750362	66	2.6	66	80	7	177	31	15	18	34	1.92
14750178--14750339	88	1.8	88	90	2	263	31	14	20	33	1.92
14750199--14750372	44	4.0	43	76	7	170	31	14	20	33	1.93
14750178--14750378	88	2.3	88	85	3	262	32	15	19	32	1.93
14751823--14751868	20	2.3	20	84	0	56	10	13	2	73	1.17
14753044--14753079	13	2.8	13	100	0	72	16	13	0	69	1.19
14757126--14757170	23	2.0	23	90	0	72	55	4	0	40	1.20
14759710--14759735	6	4.3	6	100	0	52	0	19	15	65	1.27
14765854--14765881	14	2.0	14	100	0	56	42	21	14	21	1.88
14766209--14766245	18	2.0	18	89	5	56	51	8	21	18	1.72
14768562--14768591	16	1.9	16	93	6	53	40	13	13	33	1.83
14773360--14773397	16	2.4	16	95	0	67	21	5	26	47	1.71
14775261--14775324	28	2.2	28	81	8	67	10	6	43	39	1.65
14775427--14775486	26	2.3	26	77	8	68	23	0	31	45	1.53
14775481--14775530	19	2.6	19	84	9	66	8	0	40	52	1.31
14775479--14775531	20	2.7	20	85	2	72	7	0	41	50	1.30
14776879--14777218	143	2.4	144	78	7	350	42	12	10	33	1.78
14777472--14777519	20	2.4	21	86	10	73	27	10	14	47	1.76
14777785--14777938	50	3.1	48	77	11	152	39	15	11	33	1.83
14777905--14777979	39	1.9	38	86	2	105	37	16	9	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14782301--14782341	3	13.7	3	89	0	64	68	26	2	2	1.15
14782298--14782347	9	5.6	9	90	0	64	70	22	2	6	1.20
14793940--14794007	34	2.0	34	94	0	118	29	23	5	41	1.78
14798242--14798277	9	4.0	9	85	0	54	22	0	0	77	0.76
14800445--14800773	136	2.4	138	81	9	350	38	12	17	31	1.87
14800299--14800773	144	3.4	136	75	12	383	38	13	16	31	1.88
14806226--14806268	21	2.0	22	86	4	61	30	11	4	53	1.57
14806597--14806951	175	2.0	175	98	0	683	21	12	9	56	1.65
14810860--14810945	43	2.0	43	100	0	172	53	13	4	27	1.60
14810960--14811000	20	2.0	22	85	9	59	65	9	9	14	1.46
14815044--14815241	99	2.0	99	89	0	306	51	17	8	23	1.71
14817144--14817464	126	2.6	126	86	1	450	43	10	9	35	1.73
14826391--14826437	10	4.8	10	85	15	71	6	12	0	80	0.88
14832482--14832649	79	2.1	81	82	7	202	44	10	8	36	1.70
14846027--14846060	17	2.0	17	88	0	50	58	17	2	20	1.51
14847506--14847554	20	2.4	21	86	3	64	22	2	30	44	1.64
14847452--14847658	103	2.0	103	97	0	387	19	3	33	43	1.69
14847615--14847787	7	26.7	6	71	17	91	19	0	34	46	1.54
14847618--14847789	13	13.2	13	69	18	99	19	0	34	44	1.55
14850872--14850917	20	2.3	20	85	7	58	15	8	2	73	1.16
14856793--14856876	32	2.7	31	77	3	87	34	4	8	52	1.53
14856759--14856876	31	3.8	32	73	5	100	35	5	9	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14860861--14860923	34	1.9	33	90	6	101	17	6	11	65	1.45
14861963--14862009	19	2.4	20	79	13	62	59	4	12	23	1.51
14862914--14862985	21	3.4	22	70	14	62	23	25	27	23	2.00
14868508--14868571	24	2.7	24	77	0	65	65	10	0	23	1.24
14868848--14868950	38	2.8	37	77	4	111	44	15	9	30	1.78
14869535--14869773	84	3.0	81	72	5	207	40	15	14	29	1.87
14869525--14869919	164	2.4	162	82	4	481	39	16	14	29	1.88
14869654--14869972	84	3.8	84	75	4	270	40	16	14	28	1.87
14869350--14869944	164	3.6	162	74	8	454	38	15	14	30	1.88
14874111--14874142	16	2.0	16	93	0	55	31	9	12	46	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125