genome.fa.s46.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  41  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8090995--8091142	29	5.2	29	66	20	87	40	10	4	43	1.60
8090946--8091166	57	3.8	58	90	6	333	41	10	4	43	1.60
8090946--8091160	116	1.9	114	91	3	351	40	10	4	43	1.60
8091236--8091261	3	8.7	3	100	0	52	69	0	0	30	0.89
8091257--8091288	12	2.7	12	90	0	55	65	0	0	34	0.93
8092114--8092273	64	2.5	62	86	7	223	61	0	3	34	1.19
8092195--8092273	40	2.0	41	92	2	133	60	0	5	34	1.18
8092219--8092311	16	5.6	16	70	17	64	60	0	3	36	1.13
8092133--8092345	24	8.1	26	68	17	79	61	0	3	34	1.17
8100093--8100162	28	2.3	32	83	11	85	48	10	18	22	1.78
8102478--8102504	9	3.0	9	100	0	54	22	0	0	77	0.76
8107257--8107355	49	2.0	49	90	3	155	37	8	25	29	1.84
8109849--8109887	16	2.4	16	87	8	53	58	10	5	25	1.51
8119011--8119060	24	2.0	26	92	7	86	44	10	26	20	1.82
8123240--8123283	22	2.0	22	100	0	88	40	13	13	31	1.84
8126278--8126317	6	6.3	6	88	5	53	47	0	2	50	1.14
8126227--8126292	29	2.2	29	81	2	78	51	1	4	42	1.31
8126278--8126315	13	2.9	13	77	14	51	44	0	2	52	1.14
8128524--8128580	24	2.4	23	78	13	62	59	1	0	38	1.08
8128703--8128734	15	2.1	15	94	0	55	65	3	0	31	1.08
8136713--8136766	26	2.0	27	82	10	67	51	7	3	37	1.48
8136957--8137036	35	2.5	33	82	10	94	60	1	7	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8142920--8142986	29	2.3	29	84	7	82	40	7	1	50	1.39
8142920--8142988	30	2.3	29	85	7	86	39	8	2	49	1.49
8142943--8143005	30	2.1	30	84	0	81	38	12	3	46	1.58
8143074--8143155	29	2.9	29	83	7	114	58	1	2	37	1.19
8144616--8144655	11	3.7	11	93	3	64	32	0	0	67	0.91
8144617--8144656	16	2.5	17	92	8	66	32	0	0	67	0.91
8145526--8145569	21	2.1	21	83	8	54	56	0	6	36	1.26
8145570--8145623	22	2.5	22	87	6	74	46	3	1	48	1.30
8146866--8146964	10	10.4	9	69	16	58	42	3	2	52	1.28
8146926--8146958	17	2.1	16	88	11	50	48	0	0	51	1.00
8146948--8147013	30	2.2	30	80	0	78	43	4	4	46	1.44
8147039--8147074	17	2.1	17	90	10	56	58	0	2	38	1.13
8154189--8154444	127	2.0	127	86	1	361	41	7	8	42	1.62
8154189--8154482	127	2.3	126	83	5	306	41	7	7	43	1.61
8154578--8154613	18	2.1	17	89	5	54	22	19	0	58	1.40
8155421--8155445	7	3.6	7	100	0	50	28	0	0	72	0.86
8155437--8155506	30	2.3	31	79	18	76	45	4	4	45	1.42
8156855--8156897	16	2.5	18	81	7	54	34	0	0	65	0.93
8170556--8170591	13	2.6	14	91	8	56	58	0	0	41	0.98
8170567--8170611	23	1.9	24	82	13	58	51	4	0	44	1.21
8171058--8171177	64	1.9	63	87	3	179	48	9	3	39	1.52
8171131--8171229	47	2.1	47	86	0	135	52	8	4	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8171578--8171672	47	2.0	47	97	0	181	40	23	10	26	1.87
8173603--8173652	23	2.2	23	89	3	75	50	2	6	42	1.38
8173938--8173986	21	2.3	21	92	0	80	40	6	4	48	1.47
8174304--8174340	17	2.1	18	90	5	58	29	0	0	70	0.88
8176242--8176303	23	2.7	23	87	2	81	45	1	1	51	1.20
8187332--8187412	41	2.0	41	87	7	119	56	12	6	24	1.58
8187737--8187763	2	13.5	2	100	0	54	51	0	0	48	1.00
8188442--8188475	17	1.9	18	88	5	52	44	5	0	50	1.26
8188485--8188511	12	2.2	12	100	0	54	25	0	0	74	0.83
8190186--8190220	2	17.5	2	100	0	70	51	0	0	48	1.00
8192802--8193103	153	2.0	153	91	2	491	42	11	14	31	1.81
8203382--8203454	38	1.9	37	86	8	103	61	12	6	19	1.52
8205497--8205542	24	1.9	24	82	8	58	36	0	0	63	0.95
8209919--8209987	28	2.5	28	83	4	86	44	0	4	50	1.21
8210470--8210516	22	2.2	21	84	3	58	46	8	2	42	1.46
8212478--8212515	19	2.0	20	89	5	60	55	2	0	42	1.14
8213049--8213095	23	1.9	23	83	12	58	63	0	2	34	1.06
8214804--8214839	2	18.0	2	100	0	72	0	50	0	50	1.00
8218760--8218983	117	1.9	115	86	1	313	33	13	18	33	1.91
8221755--8221797	11	3.7	11	81	9	50	62	2	2	32	1.20
8221886--8221931	13	3.6	13	74	14	51	50	0	6	43	1.28
8224906--8224949	10	4.1	10	78	16	52	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8224905--8224953	23	2.1	23	96	0	89	38	0	0	61	0.96
8225431--8225559	52	2.5	52	85	0	186	27	17	7	48	1.74
8225586--8225625	11	3.6	11	93	0	71	52	25	0	22	1.47
8228105--8228135	2	15.5	2	100	0	62	48	0	0	51	1.00
8233048--8233079	3	10.7	3	100	0	64	68	0	0	31	0.90
8233756--8233782	11	2.5	11	100	0	54	22	7	18	51	1.70
8238585--8238630	17	2.6	18	74	16	51	58	0	0	41	0.98
8239196--8239220	12	2.1	12	100	0	50	36	0	24	40	1.55
8240451--8240495	22	2.1	22	95	4	83	33	26	4	35	1.77
8245217--8245260	21	2.0	23	91	8	74	34	9	0	56	1.31
8246833--8246866	16	2.1	16	88	0	50	55	0	0	44	0.99
8247110--8247145	16	2.2	17	90	5	56	86	0	13	0	0.58
8247112--8247151	13	3.1	13	92	0	62	80	0	20	0	0.72
8249766--8249806	18	2.2	19	86	4	57	56	0	0	43	0.99
8249766--8249823	20	3.0	19	78	9	55	51	3	0	44	1.18
8255564--8255600	2	18.5	2	94	0	65	51	2	0	45	1.15
8263534--8263578	21	2.1	22	91	4	74	42	4	4	48	1.43
8269308--8269381	23	3.3	23	70	19	66	40	2	1	55	1.22
8271943--8272006	31	2.1	31	88	5	94	45	4	15	34	1.67
8272191--8272245	27	2.0	28	96	3	103	40	10	12	36	1.79
8272969--8273011	17	2.5	17	84	0	50	39	13	6	39	1.72
8273309--8273351	21	2.0	21	91	8	70	39	2	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8274799--8274825	2	13.5	2	100	0	54	51	0	0	48	1.00
8277357--8277390	17	2.0	17	94	0	59	47	14	5	32	1.69
8283848--8283963	58	2.0	58	94	0	205	38	29	12	18	1.89
8285796--8285826	15	2.1	15	93	0	53	38	0	0	61	0.96
8285830--8285892	31	2.1	30	84	3	81	53	3	0	42	1.16
8285940--8285996	17	3.6	15	75	13	51	56	1	0	42	1.10
8285936--8285987	11	4.9	11	76	6	54	53	1	0	44	1.11
8291310--8291475	83	2.0	83	84	0	215	22	24	33	18	1.97
8301969--8302015	21	2.3	21	85	10	62	42	0	8	48	1.33
8302593--8302622	2	15.0	2	100	0	60	50	0	0	50	1.00
8308996--8309020	6	4.2	6	100	0	50	68	0	0	32	0.90
8309018--8309084	34	1.9	35	84	3	91	47	0	2	49	1.16
8310797--8310828	16	2.0	16	93	0	55	6	6	3	84	0.86
8321348--8321401	24	2.3	23	84	9	65	48	1	3	46	1.30
8321362--8321401	6	6.7	6	83	11	55	47	0	2	50	1.14
8321363--8321396	17	1.9	18	94	5	61	50	0	2	47	1.16
8325392--8325438	20	2.3	20	96	0	85	59	0	6	34	1.23
8325566--8325664	49	2.0	49	100	0	198	35	22	14	28	1.93
8326128--8326187	26	2.3	26	83	13	72	61	0	3	35	1.12
8333485--8333558	20	3.5	20	80	7	60	52	0	1	45	1.09
8333519--8333568	18	3.1	18	71	28	58	58	0	0	42	0.98
8334423--8334488	25	2.6	25	83	11	89	57	1	1	39	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8334506--8334603	50	1.9	51	87	2	144	48	0	4	46	1.20
8334533--8334604	22	3.3	23	72	16	57	51	0	1	47	1.09
8334535--8334616	14	6.4	13	70	25	59	48	0	1	50	1.08
8343256--8343280	13	1.9	13	100	0	50	24	8	4	64	1.38
8352080--8352119	16	2.5	16	91	0	62	35	2	22	40	1.68
8354871--8355033	79	2.0	80	85	1	220	34	17	17	30	1.93
8360867--8360943	28	2.8	28	88	4	102	16	1	33	48	1.55
8364845--8364913	8	8.1	8	78	12	66	52	0	0	47	1.00
8364845--8364927	17	4.8	17	85	4	112	51	0	0	48	1.00
8364846--8364923	35	2.2	35	100	0	156	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125