genome.fa.s46.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  32  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6404682--6404838	50	3.1	51	80	8	158	24	8	8	57	1.57
6405231--6405283	27	2.0	26	85	7	70	75	7	5	11	1.18
6406114--6406166	5	9.6	5	80	15	52	77	0	3	18	0.92
6406115--6406166	17	3.1	16	81	15	61	78	0	3	17	0.89
6406662--6406708	15	3.2	15	69	6	51	25	10	19	44	1.82
6408253--6408319	21	3.3	21	83	8	77	4	17	0	77	0.93
6409097--6409419	58	5.5	57	81	10	327	38	14	5	42	1.68
6409097--6409419	57	5.6	56	82	8	326	38	14	5	42	1.68
6409461--6409493	17	1.9	17	93	0	57	69	0	9	21	1.15
6409924--6409998	27	3.1	24	75	16	66	72	1	5	21	1.13
6409929--6410002	24	3.0	24	77	16	71	70	1	4	24	1.13
6409873--6410000	17	7.6	17	70	18	67	70	1	5	22	1.17
6410222--6410262	14	2.9	13	86	13	55	2	0	9	87	0.62
6410225--6410262	19	2.0	20	94	5	69	2	0	10	86	0.66
6410329--6410676	42	8.4	42	83	5	318	35	20	16	27	1.94
6410286--6410676	42	9.4	41	82	6	315	36	20	16	27	1.93
6410286--6410676	83	4.7	83	79	7	337	36	20	16	27	1.93
6412337--6412399	32	2.0	31	84	6	81	17	17	0	65	1.28
6416309--6416745	58	7.7	57	72	14	319	37	13	6	42	1.71
6416309--6416689	58	6.5	57	76	12	346	37	13	6	41	1.71
6416763--6416829	27	2.6	25	79	9	80	74	0	5	19	1.02
6416764--6416827	5	12.4	5	74	21	53	76	0	4	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6416859--6416883	4	6.2	4	100	0	50	76	0	0	24	0.80
6417235--6417280	17	2.8	16	90	9	67	71	2	8	17	1.21
6417250--6417364	23	4.9	22	74	22	76	70	0	5	23	1.13
6417262--6417366	26	4.3	24	73	20	85	71	0	4	22	1.11
6417258--6417359	9	10.7	9	70	22	50	70	0	4	23	1.12
6417213--6417334	16	7.6	16	73	15	76	70	1	5	22	1.17
6420982--6421151	48	3.3	50	79	13	195	25	11	8	54	1.64
6420999--6421152	51	3.1	50	79	11	190	24	11	9	54	1.65
6422451--6422511	5	11.6	5	77	16	61	75	1	1	21	0.98
6422452--6422508	6	9.5	6	77	19	57	77	1	1	19	0.95
6422451--6422511	16	3.8	17	73	18	67	75	1	1	21	0.98
6422706--6422766	29	2.3	24	83	13	68	52	8	6	32	1.57
6422857--6422909	24	2.2	24	82	0	61	56	13	3	26	1.54
6422832--6422895	32	2.0	32	87	0	92	57	14	3	25	1.51
6422864--6422924	24	2.5	24	73	23	65	55	8	4	31	1.50
6422935--6423037	32	3.2	32	88	0	161	53	8	5	32	1.56
6423002--6423050	22	2.3	22	82	6	66	57	4	4	34	1.37
6423017--6423063	23	2.0	22	84	8	58	57	2	4	36	1.30
6422903--6423127	119	1.9	118	86	0	324	54	8	4	32	1.50
6423063--6423124	32	2.0	31	96	3	115	56	11	3	29	1.50
6423089--6423129	20	2.1	19	86	4	55	56	9	2	31	1.45
6423088--6423168	24	3.6	24	74	11	82	55	8	3	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6423254--6423297	16	2.6	17	82	10	54	54	6	6	31	1.53
6423234--6423278	21	2.1	21	83	0	54	55	4	6	33	1.46
6423932--6423972	14	3.1	14	79	13	59	70	9	0	19	1.14
6424226--6424466	43	5.5	42	78	7	212	41	17	12	28	1.85
6424322--6424416	46	2.1	46	86	4	129	48	14	10	26	1.76
6425305--6425405	52	2.0	51	86	2	139	49	11	14	23	1.77
6431506--6431545	19	2.0	20	85	4	55	17	0	12	70	1.18
6432218--6432278	20	3.0	21	80	4	61	31	6	9	52	1.60
6432246--6432290	20	2.2	20	96	0	81	28	8	6	55	1.56
6432300--6432566	41	6.6	41	84	7	359	29	5	12	52	1.62
6432324--6432557	80	2.9	80	91	0	371	28	5	11	53	1.61
6432300--6432566	121	2.2	120	87	3	385	29	5	12	52	1.62
6432650--6432694	19	2.3	19	80	3	54	35	4	6	53	1.47
6432834--6432896	13	4.9	13	72	18	51	30	11	15	42	1.82
6435120--6435555	225	1.9	225	89	0	676	38	13	16	31	1.88
6437831--6437905	36	2.1	37	87	7	109	18	4	34	42	1.69
6437853--6437902	22	2.3	22	86	6	66	18	4	38	40	1.69
6437830--6438377	7	76.7	7	75	7	228	21	3	35	39	1.71
6440713--6440757	22	2.0	22	83	8	56	68	2	20	8	1.27
6449799--6450406	47	12.9	48	81	7	585	28	12	20	39	1.88
6449805--6450406	96	6.4	94	82	5	575	27	12	20	39	1.88
6450153--6450418	44	5.9	44	77	9	218	29	14	18	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6450610--6450644	14	2.4	15	90	4	54	0	17	0	82	0.66
6450772--6450820	23	2.1	23	88	0	71	46	12	14	26	1.79
6451603--6451658	16	3.7	15	77	15	53	39	0	1	58	1.08
6452782--6453464	182	3.8	177	79	6	668	40	10	8	39	1.71
6453534--6453565	17	1.9	16	93	6	55	43	3	0	53	1.16
6453521--6454319	181	4.5	177	83	5	881	39	9	9	42	1.68
6453521--6454305	178	4.4	175	82	5	797	40	9	8	41	1.68
6454508--6454948	181	2.4	177	79	7	485	41	9	8	40	1.67
6454799--6455062	143	1.8	145	87	3	399	44	9	6	39	1.63
6454942--6460519	180	31.1	180	74	8	3451	41	10	8	39	1.69
6454942--6460529	357	15.6	356	74	8	3340	41	10	8	39	1.69
6454942--6460492	539	10.3	535	75	8	3752	41	10	8	39	1.69
6460846--6461133	159	1.8	160	83	3	393	40	8	12	38	1.73
6461062--6461396	182	1.8	181	83	3	440	40	5	11	43	1.63
6461502--6463231	181	9.6	180	76	7	1349	38	8	10	42	1.69
6461503--6463192	540	3.1	538	80	5	1668	38	8	10	42	1.70
6461758--6463074	716	1.8	715	80	6	1608	38	8	10	42	1.69
6461758--6463231	716	2.1	714	79	6	1599	38	8	10	42	1.69
6464071--6464144	21	3.6	21	70	13	64	14	22	29	32	1.94
6465128--6465201	38	1.9	38	91	0	121	29	29	10	29	1.91
6470292--6470341	21	2.4	21	80	3	57	24	30	18	28	1.97
6471612--6471643	15	2.1	15	94	0	55	28	6	0	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6471167--6484300	181	73.2	180	71	11	5867	40	8	9	41	1.68
6473362--6473394	18	1.9	17	88	11	50	48	6	6	39	1.53
6474247--6474294	18	2.7	18	84	12	64	45	0	8	45	1.33
6474723--6474855	67	2.0	67	92	0	221	42	6	14	36	1.72
6476082--6476408	167	2.0	162	82	5	388	39	7	9	42	1.66
6476323--6476693	201	1.8	202	79	7	432	41	6	8	43	1.61
6477583--6477899	169	1.9	168	80	9	376	40	8	10	41	1.69
6476520--6484300	360	21.8	360	74	9	4921	40	8	9	41	1.68
6476774--6484293	361	21.1	358	74	10	4053	40	8	9	41	1.68
6476520--6484300	540	14.5	532	74	11	3646	40	8	9	41	1.68
6485302--6487757	181	13.7	176	72	9	914	39	8	10	42	1.70
6485302--6527921	716	59.2	712	67	15	6016	40	8	9	41	1.68
6487717--6487753	19	2.0	19	89	5	58	40	5	0	54	1.24
6487897--6490691	362	7.9	352	74	9	1581	40	8	10	41	1.69
6488933--6490691	181	9.8	179	76	8	1202	40	8	9	41	1.69
6490294--6490329	16	2.1	18	90	10	58	44	2	8	44	1.48
6488933--6490496	717	2.2	720	79	7	1626	40	8	9	40	1.69
6490557--6490827	130	2.1	130	99	0	535	39	5	12	42	1.67
6490436--6490997	307	1.8	305	81	6	659	40	7	10	41	1.67
6489899--6491531	843	1.9	839	79	8	1821	40	8	10	41	1.68
6490742--6492513	181	9.9	176	71	13	721	40	8	9	41	1.67
6492532--6492697	92	1.8	90	84	2	224	46	8	11	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6492171--6493060	451	2.0	452	84	3	1191	41	8	10	40	1.69
6492624--6497720	181	28.4	177	74	8	2553	40	8	9	41	1.68
6494502--6494540	20	2.0	20	85	9	55	38	5	2	53	1.37
6495425--6495760	182	1.9	181	80	3	406	44	6	8	40	1.62
6496372--6496411	21	1.9	22	90	10	66	50	7	5	37	1.53
6492615--6497604	357	13.9	358	73	8	1546	40	8	9	41	1.68
6492609--6497718	539	9.5	537	74	7	3355	40	8	9	41	1.68
6497454--6497942	271	1.8	271	81	2	615	42	8	10	38	1.69
6497321--6498172	452	1.9	450	82	4	1081	40	8	9	41	1.68
6497729--6500124	181	13.3	180	77	7	1901	40	8	9	41	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125