genome.fa.s46.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  17  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2926329--2926378	24	2.2	22	82	10	57	0	14	4	82	0.82
2927402--2927453	3	17.3	3	95	0	95	67	1	0	30	1.02
2928281--2928322	22	1.9	22	85	9	59	54	38	2	4	1.34
2929831--2929904	23	3.4	21	71	14	60	50	24	1	24	1.58
2929908--2929941	16	2.1	16	88	0	50	50	38	2	8	1.49
2929921--2929961	21	2.0	20	86	13	57	53	36	0	9	1.34
2931466--2931501	17	2.1	18	89	5	56	38	8	0	52	1.32
2931637--2931661	2	12.5	2	100	0	50	0	0	48	52	1.00
2948890--2948967	23	3.3	24	77	13	74	51	2	2	43	1.29
2948931--2948995	31	2.1	30	83	8	78	53	3	1	41	1.25
2949002--2949045	21	2.2	20	88	11	65	40	0	0	59	0.98
2949014--2949617	21	28.2	20	70	16	192	47	4	2	45	1.36
2949370--2949617	42	5.9	42	75	7	223	44	4	3	47	1.37
2949588--2949658	27	2.6	27	81	2	88	46	1	1	50	1.18
2949608--2949673	21	3.1	19	78	14	51	46	0	1	51	1.10
2949628--2949690	33	1.9	33	84	12	85	47	1	0	50	1.10
2949603--2949684	27	3.2	27	73	26	81	45	1	1	52	1.16
2950579--2950614	2	18.0	2	100	0	72	50	0	0	50	1.00
2955958--2955988	12	2.7	12	95	5	55	58	6	0	35	1.24
2963521--2963644	42	3.0	42	82	2	153	28	13	19	38	1.90
2963656--2963945	41	7.0	41	83	4	321	28	15	17	39	1.89
2963656--2963924	84	3.2	84	79	8	232	28	14	16	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2963656--2963945	126	2.3	125	85	2	404	28	15	17	39	1.89
2964144--2964198	6	9.2	6	73	15	51	20	0	1	78	0.85
2964145--2964286	14	10.4	13	67	14	54	26	3	2	68	1.17
2964146--2964198	24	2.2	24	83	12	65	20	0	1	77	0.87
2964158--2964287	27	4.7	28	79	4	104	26	4	1	66	1.19
2964191--2964294	55	1.9	55	86	2	147	28	5	2	62	1.33
2965181--2965251	3	23.0	3	77	16	65	26	2	2	67	1.18
2965182--2965231	22	2.3	22	90	10	77	26	2	0	72	0.96
2965180--2965246	18	3.7	18	82	7	82	25	2	1	70	1.10
2965181--2965251	34	2.1	34	84	5	90	26	2	2	67	1.18
2965177--2965246	13	5.4	14	77	22	73	25	2	1	70	1.10
2965274--2965312	5	7.4	5	91	8	60	17	2	0	79	0.84
2965277--2965319	10	3.8	11	87	12	61	16	2	2	79	0.95
2965274--2965306	16	2.1	16	100	0	66	18	0	0	81	0.68
2965332--2965495	59	2.8	58	86	2	231	42	6	10	40	1.65
2968101--2968141	21	2.0	21	90	0	64	17	7	2	73	1.17
2969076--2969193	34	3.3	34	67	25	91	27	2	7	61	1.36
2969078--2969221	73	2.0	74	91	4	238	27	2	7	62	1.34
2969182--2969233	15	3.4	15	75	2	50	28	0	5	65	1.16
2970704--2970730	12	2.2	12	100	0	54	51	14	0	33	1.43
2974159--2974212	26	2.1	26	82	6	65	38	0	0	61	0.96
2974855--2974902	19	2.5	19	83	10	62	66	0	6	27	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2980020--2980052	17	1.9	17	88	11	50	48	9	6	36	1.60
2981064--2981102	19	2.1	19	85	4	53	12	10	0	76	1.01
2981337--2981375	18	2.1	18	85	4	51	35	7	0	56	1.28
2982340--2982383	20	2.2	20	84	8	54	40	6	6	45	1.57
2983474--2983508	17	1.9	19	88	11	56	51	2	0	45	1.16
2993278--2993303	13	2.0	13	100	0	52	15	15	23	46	1.83
2993401--2993508	32	3.2	32	68	16	101	51	6	3	37	1.45
2993397--2993535	69	2.0	69	100	0	278	47	7	4	41	1.51
2997234--2997262	15	1.9	15	100	0	58	51	0	13	34	1.42
2998020--2998062	15	2.9	15	89	0	59	86	0	6	6	0.72
2998327--2998379	13	3.8	13	79	13	61	83	1	11	3	0.87
2998327--2998376	14	3.5	14	77	2	55	84	2	10	4	0.84
2998352--2998381	15	1.9	15	93	6	51	90	0	10	0	0.47
2999491--2999708	45	4.9	46	72	11	166	35	5	13	45	1.65
2999612--2999668	21	2.6	21	75	25	55	29	3	14	52	1.58
2999682--2999742	30	2.0	30	100	0	122	47	3	9	39	1.53
2999898--2999977	19	4.3	19	72	12	76	27	15	13	43	1.84
2999921--3000010	36	2.5	36	83	3	119	34	15	10	40	1.81
3000053--3000090	17	2.2	17	90	0	58	39	13	10	36	1.79
3000393--3000552	44	3.6	44	79	8	157	26	13	14	46	1.81
3003353--3003455	30	3.4	30	77	11	86	39	1	4	53	1.33
3008659--3008688	2	15.0	2	92	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3011454--3011491	19	2.0	19	94	0	67	34	47	7	10	1.67
3012181--3012227	17	2.8	17	76	0	58	21	0	0	78	0.75
3012295--3012359	3	22.7	3	76	9	64	70	1	3	24	1.10
3012295--3012360	20	3.3	19	79	8	69	69	1	3	25	1.11
3012470--3012509	3	13.3	3	100	0	80	67	0	0	32	0.91
3012641--3012708	30	2.2	31	82	10	86	51	23	0	25	1.48
3012797--3012923	68	1.9	66	82	6	157	44	33	2	19	1.64
3015300--3015342	16	2.6	17	85	10	63	32	0	4	62	1.15
3015354--3015474	24	4.9	24	73	17	79	50	0	1	47	1.16
3015430--3015599	15	11.1	15	69	18	100	47	1	0	51	1.13
3015446--3015604	46	3.3	46	79	10	153	47	1	0	50	1.13
3015562--3015607	20	2.2	21	92	3	76	50	0	0	50	1.00
3030598--3030654	29	2.0	29	86	3	80	33	3	5	57	1.38
3030901--3030939	13	2.9	13	92	3	60	66	0	2	30	1.05
3031044--3031078	18	1.9	18	88	0	52	42	0	2	54	1.15
3032307--3032440	72	1.9	72	82	3	171	40	5	4	50	1.45
3035573--3035625	25	2.1	25	83	13	65	39	0	1	58	1.09
3035555--3035626	24	3.0	25	78	8	69	50	0	1	48	1.09
3039889--3039948	31	1.9	31	86	0	84	45	5	3	46	1.41
3043201--3043245	12	3.6	12	84	6	54	62	0	2	35	1.08
3050848--3050969	33	3.7	31	75	14	104	31	15	27	24	1.96
3056988--3057045	28	2.1	28	96	0	107	41	18	6	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057750--3057833	42	2.0	42	100	0	168	59	4	11	23	1.51
3064143--3064189	18	2.5	19	86	13	71	53	0	0	46	1.00
3064159--3064218	12	5.1	12	74	9	52	55	0	0	45	0.99
3074908--3075880	187	5.2	187	80	4	1014	35	10	11	42	1.76
3074937--3075855	374	2.5	372	85	3	1258	36	10	10	42	1.75
3076677--3076735	25	2.4	25	77	2	66	22	5	30	42	1.75
3079915--3079985	35	2.0	35	86	8	99	33	15	12	38	1.85
3081864--3081889	9	2.9	9	100	0	52	34	46	11	7	1.69
3087721--3087752	3	10.7	3	100	0	64	68	31	0	0	0.90
3089039--3089099	31	2.0	31	90	0	95	57	9	4	27	1.52
3100153--3100210	30	1.9	30	92	0	98	36	1	8	53	1.42
3100884--3100953	20	3.5	19	72	16	52	57	2	5	34	1.37
3100813--3101097	113	2.5	113	77	3	320	51	4	7	37	1.48
3101689--3101715	13	2.1	13	100	0	54	40	0	0	59	0.98
3108597--3108683	22	4.0	22	71	15	72	35	1	1	62	1.11
3108650--3108682	17	1.9	17	93	0	57	24	3	0	72	0.98
3108651--3108693	17	2.5	17	84	3	50	27	4	2	65	1.25
3111814--3111847	15	2.2	16	94	5	61	44	0	0	55	0.99
3112088--3112176	27	3.3	25	76	16	72	31	0	17	50	1.47
3113527--3113610	23	3.7	22	76	9	73	38	5	0	55	1.24
3113784--3113828	20	2.3	20	84	3	56	44	0	0	55	0.99
3114500--3114602	52	2.0	52	98	0	197	44	6	9	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3117751--3117781	1	31.0	1	100	0	62	100	0	0	0	0.00
3118765--3118804	17	2.3	18	86	4	55	70	2	0	27	1.01
3125106--3125131	3	8.7	3	100	0	52	30	0	0	69	0.89
3137302--3137438	61	2.3	61	83	1	159	22	24	12	40	1.89
3138335--3138375	21	1.9	21	90	5	64	19	0	24	56	1.42
3138731--3138774	19	2.3	19	85	11	63	11	2	2	84	0.81
3138764--3138804	16	2.6	16	88	0	55	17	4	2	75	1.08
3141978--3142130	21	7.2	21	75	4	114	33	5	7	52	1.55
3143004--3143118	33	3.6	30	75	11	86	49	6	2	41	1.41
3143206--3143236	14	2.2	14	94	0	53	41	0	3	54	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125