genome.fa.s46.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  77  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15508783--15508862	26	3.1	25	78	5	79	15	0	36	48	1.45
15508833--15508964	19	7.1	19	66	12	67	15	3	35	44	1.65
15508945--15509018	26	2.8	26	87	0	103	17	1	36	44	1.57
15508984--15509037	20	2.7	19	78	13	56	14	0	38	46	1.45
15514134--15514188	26	2.2	25	83	9	67	29	14	14	41	1.85
15514112--15514204	45	2.0	46	83	6	118	30	13	16	39	1.87
15514329--15514620	46	6.4	45	71	4	183	32	8	15	42	1.78
15514329--15514538	22	9.2	23	65	13	83	33	7	14	44	1.73
15514329--15514538	92	2.3	91	80	4	217	33	7	14	44	1.73
15514726--15514788	17	3.6	17	74	8	56	39	15	12	31	1.85
15514938--15514973	17	2.1	17	94	0	63	36	22	11	30	1.89
15521311--15521743	222	2.0	222	94	0	758	41	11	11	35	1.77
15522519--15522563	23	2.0	23	90	0	72	35	2	4	57	1.31
15522958--15523014	20	2.9	20	84	7	64	21	3	21	54	1.59
15523458--15523511	12	4.3	12	79	13	56	11	5	3	79	1.02
15523655--15523698	21	2.0	22	86	8	63	34	4	6	54	1.47
15524588--15524644	19	3.1	18	82	10	71	24	17	21	36	1.94
15524591--15524663	36	2.0	38	86	5	105	24	19	19	36	1.94
15524600--15524669	19	3.8	18	78	14	63	22	20	17	40	1.92
15524810--15524855	3	15.3	3	100	0	92	32	0	0	67	0.91
15527869--15527913	20	2.2	20	100	0	90	46	4	13	35	1.63
15532066--15532098	17	1.9	17	93	0	57	57	9	0	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15536293--15536361	6	11.2	6	78	6	66	26	1	7	65	1.27
15536297--15536357	31	2.0	31	90	0	95	24	1	8	65	1.29
15537614--15537684	23	3.3	21	72	20	67	36	5	11	46	1.63
15539054--15539110	4	14.2	4	92	0	78	19	1	5	73	1.11
15543077--15543110	11	3.2	11	87	8	52	85	0	14	0	0.60
15543323--15543386	33	1.9	33	93	0	110	37	18	7	35	1.80
15546029--15546239	64	3.3	64	79	1	197	47	16	17	18	1.82
15546047--15546295	129	1.9	129	81	3	295	47	16	16	18	1.82
15546052--15546296	65	3.8	64	78	3	215	48	16	16	19	1.82
15546087--15546296	64	3.3	63	78	6	208	48	16	16	19	1.81
15558481--15558535	18	3.2	18	75	15	62	52	5	12	29	1.61
15558486--15558533	15	2.9	16	78	9	53	47	6	14	31	1.69
15558488--15558553	33	2.2	31	82	15	77	54	4	12	28	1.57
15558612--15558670	17	3.5	17	81	4	66	61	8	1	28	1.35
15559394--15559422	12	2.3	13	94	5	51	17	0	0	82	0.66
15560144--15560171	10	2.8	10	100	0	56	7	32	28	32	1.84
15560994--15561023	9	3.4	9	95	4	53	16	0	0	83	0.65
15561544--15561626	18	4.7	18	75	14	75	42	16	8	32	1.79
15561541--15561693	17	9.1	17	70	14	95	42	15	9	33	1.78
15562049--15562158	44	2.5	42	80	5	103	40	15	10	34	1.81
15562097--15562158	22	2.9	21	76	7	70	40	16	11	32	1.83
15562101--15562171	22	3.1	22	75	15	65	36	16	8	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15562295--15562500	21	9.7	21	84	3	250	40	16	4	38	1.69
15563042--15563435	117	3.3	118	93	2	677	34	12	7	44	1.72
15563042--15563435	118	3.3	118	94	2	693	34	12	7	44	1.72
15563461--15563553	5	18.2	5	72	18	68	78	2	4	15	1.00
15563486--15563553	26	2.6	25	82	13	84	79	1	4	14	0.96
15563461--15563553	21	4.3	22	75	16	79	78	2	4	15	1.00
15563469--15563545	16	4.9	16	76	13	65	79	1	5	14	0.97
15564604--15564702	6	16.5	6	78	12	96	74	0	3	22	0.95
15564600--15564695	17	5.5	17	88	4	129	73	0	3	22	0.97
15564592--15564683	47	2.0	46	82	6	105	72	0	2	25	0.95
15564600--15564695	35	2.8	34	85	4	129	73	0	3	22	0.97
15565064--15565109	20	2.3	20	92	0	74	45	15	15	23	1.84
15570643--15570704	11	5.4	11	73	17	54	70	3	1	24	1.10
15570643--15570706	22	2.8	22	76	9	65	70	3	1	25	1.11
15573189--15573244	18	3.2	18	76	11	55	19	1	0	78	0.84
15573190--15573245	23	2.4	22	80	16	60	21	1	0	76	0.87
15573201--15573242	15	2.7	16	89	10	61	21	0	0	78	0.75
15573205--15573242	8	4.9	8	81	18	53	21	0	0	78	0.74
15573205--15573253	23	2.1	23	81	7	55	24	4	0	71	1.03
15573355--15573389	16	2.1	18	89	10	56	68	5	0	25	1.11
15573749--15573789	4	10.2	4	84	10	57	73	0	2	24	0.96
15573799--15573845	16	3.0	16	85	14	55	70	4	0	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15574775--15574898	62	2.0	62	98	0	239	20	30	12	36	1.90
15576312--15576340	10	2.9	10	100	0	58	31	37	0	31	1.58
15581414--15581440	10	2.7	10	100	0	54	37	11	18	33	1.86
15585346--15585518	62	2.8	63	85	2	224	37	13	24	24	1.91
15585851--15585928	21	3.7	21	80	1	84	35	8	17	37	1.82
15586407--15586800	42	9.3	42	87	4	488	23	17	12	46	1.82
15586411--15586800	129	3.0	128	88	3	552	23	16	12	47	1.81
15586771--15586828	28	2.1	28	90	0	89	22	17	12	48	1.80
15586685--15586893	112	1.9	114	86	4	307	22	18	13	45	1.84
15586799--15587087	42	6.9	42	80	7	311	25	18	13	42	1.87
15586729--15586870	70	2.0	70	84	0	185	22	17	12	47	1.81
15586642--15586935	154	1.9	157	85	4	418	23	18	12	45	1.83
15586800--15587084	124	2.3	126	82	7	348	25	18	13	41	1.88
15590040--15590102	33	2.0	33	84	6	85	53	6	9	30	1.58
15598381--15598419	13	3.0	13	92	0	69	46	5	0	48	1.24
15598544--15598583	13	3.2	13	82	17	57	67	2	0	30	1.04
15599195--15599224	14	2.1	15	93	6	53	36	0	0	63	0.95
15599174--15599222	21	2.4	20	83	12	64	38	0	0	61	0.96
15599808--15599846	18	2.2	18	85	0	51	53	2	25	17	1.56
15602241--15602299	30	2.0	30	83	6	75	42	37	3	16	1.66
15602323--15602379	25	2.3	25	90	0	96	42	21	5	31	1.75
15602314--15602395	25	3.3	25	83	8	71	43	24	4	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15607879--15607947	19	3.7	19	81	9	79	20	0	39	40	1.52
15607951--15607990	19	2.0	20	85	4	55	27	5	32	35	1.79
15608075--15608124	17	3.1	17	73	23	54	20	6	32	42	1.76
15610028--15610184	42	3.8	40	76	12	129	40	14	15	29	1.87
15618136--15618182	23	2.0	23	95	0	85	40	12	19	27	1.88
15626507--15626536	15	1.9	16	93	6	53	23	0	0	76	0.78
15626564--15626593	15	2.1	15	93	6	53	80	0	0	20	0.72
15627188--15627240	26	2.0	26	85	7	70	41	3	15	39	1.65
15629642--15629685	23	2.0	23	86	4	63	38	0	11	50	1.39
15642372--15642667	37	8.2	35	69	10	168	18	19	14	48	1.81
15642355--15642677	108	3.0	108	90	0	511	17	19	14	47	1.82
15642357--15642732	108	3.5	107	86	1	500	18	19	14	47	1.83
15642781--15643286	171	3.0	171	80	8	503	23	20	12	43	1.85
15643313--15643377	34	1.9	33	84	3	85	21	16	9	52	1.72
15643388--15643620	121	1.9	121	89	0	358	17	20	14	47	1.82
15643733--15644156	74	5.8	74	75	9	203	21	19	10	48	1.78
15643625--15644124	110	4.6	110	80	4	458	21	19	10	47	1.80
15643634--15644143	146	3.5	144	82	4	531	20	19	10	48	1.79
15643618--15644156	36	14.8	35	74	8	333	21	19	10	48	1.79
15644354--15644387	17	1.9	18	94	5	61	64	2	0	32	1.08
15645840--15645864	13	1.9	13	100	0	50	48	32	4	16	1.64
15646967--15647019	27	2.0	27	92	0	88	32	20	30	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15653922--15653964	17	2.5	17	84	3	50	67	4	0	27	1.10
15654109--15654170	20	3.2	20	79	11	83	66	4	1	27	1.21
15654109--15654177	18	3.8	17	81	12	75	65	7	1	26	1.27
15654282--15654328	20	2.3	20	85	0	58	63	12	0	23	1.28
15654530--15654605	35	2.1	37	80	4	84	22	2	5	69	1.21
15654710--15654779	10	6.5	10	74	18	61	30	1	2	65	1.15
15654710--15654770	12	5.3	12	77	13	58	29	1	3	65	1.18
15654708--15654779	9	6.8	10	76	17	58	31	1	2	63	1.17
15654765--15654813	24	2.1	24	88	3	73	16	2	10	71	1.22
15657031--15657095	2	32.5	2	77	0	58	41	6	6	46	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125