genome.fa.s46.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  99  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19117420--19117456	18	2.0	19	89	5	58	35	18	21	24	1.96
19124376--19124590	106	2.0	106	97	0	403	29	13	13	44	1.81
19133336--19133455	55	2.2	53	82	11	145	20	12	7	60	1.56
19134342--19134380	19	2.1	19	90	9	62	0	33	0	66	0.92
19134493--19134532	21	1.9	21	90	10	64	55	10	7	27	1.60
19134748--19134782	18	1.9	18	94	0	61	8	8	0	82	0.83
19134950--19135202	41	6.1	41	84	2	310	42	22	11	23	1.86
19134955--19135199	123	2.0	124	86	2	350	44	21	11	23	1.84
19147782--19147825	19	2.2	21	84	15	58	59	13	11	15	1.62
19147778--19147826	21	2.4	21	83	10	66	59	14	10	16	1.61
19147878--19147922	21	2.1	22	87	4	65	55	13	0	31	1.38
19148628--19148677	20	2.8	17	77	14	55	26	0	2	72	0.96
19156022--19156072	21	2.4	21	80	3	57	50	5	5	37	1.51
19159102--19159140	19	2.0	20	85	5	53	46	2	0	51	1.14
19160421--19160472	21	2.5	20	79	11	61	5	9	3	80	0.99
19160586--19160613	2	14.0	2	100	0	56	50	0	0	50	1.00
19161910--19161964	20	2.7	21	86	5	69	41	5	0	52	1.24
19163018--19163063	23	2.0	23	91	0	74	41	8	15	34	1.78
19168178--19168240	31	2.0	33	81	12	78	39	12	6	41	1.69
19168240--19168272	8	4.2	8	92	7	59	24	0	0	75	0.80
19169624--19169670	20	2.3	21	85	7	69	48	31	4	14	1.63
19174196--19174232	15	2.4	17	78	21	53	51	24	0	24	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19174722--19174775	22	2.4	22	90	3	90	38	1	3	55	1.28
19174735--19174783	22	2.2	22	82	10	55	46	2	8	42	1.45
19176482--19176521	16	2.3	18	87	12	57	75	0	7	17	1.03
19182151--19182198	23	2.1	24	92	7	82	29	4	0	66	1.10
19182583--19182615	9	3.7	9	95	0	57	84	0	0	15	0.61
19182759--19182798	20	2.1	19	90	4	62	30	0	0	70	0.88
19182759--19182791	10	3.2	11	87	12	52	30	0	0	69	0.88
19182812--19182856	22	2.0	23	87	12	67	57	2	0	40	1.11
19182812--19182858	11	4.3	11	79	15	53	55	2	0	42	1.12
19190350--19190409	31	2.0	30	83	9	77	55	5	5	35	1.44
19196380--19196412	18	1.9	18	88	11	52	24	6	12	57	1.57
19197268--19197322	6	9.7	6	75	25	57	34	0	0	65	0.93
19197274--19197321	8	6.0	8	77	18	55	35	0	0	64	0.94
19197275--19197321	18	2.8	16	84	9	67	34	0	0	65	0.93
19197268--19197322	16	3.2	17	78	17	69	34	0	0	65	0.93
19197312--19197363	20	2.7	18	83	16	68	50	1	0	48	1.12
19197315--19197358	20	2.1	21	91	8	72	47	2	0	50	1.13
19200235--19200290	29	1.9	29	96	0	103	19	25	7	48	1.74
19202214--19202241	2	14.0	2	100	0	56	50	0	0	50	1.00
19204421--19204450	2	15.0	2	100	0	60	50	0	0	50	1.00
19204605--19204632	2	14.0	2	100	0	56	50	0	0	50	1.00
19207273--19207312	3	14.0	3	84	10	57	67	2	0	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19207680--19207717	20	1.9	20	100	0	76	47	21	10	21	1.80
19208155--19208183	3	9.7	3	100	0	58	65	0	0	34	0.93
19208397--19208725	39	8.5	39	75	9	228	44	20	8	25	1.80
19208397--19208725	157	2.1	155	81	7	382	44	20	8	25	1.80
19208397--19208725	78	4.2	78	75	6	263	44	20	8	25	1.80
19212787--19213151	184	2.0	185	89	2	556	39	11	9	39	1.75
19215554--19215596	13	3.3	13	80	9	52	32	4	0	62	1.15
19215987--19216019	10	3.5	10	84	16	52	81	0	0	18	0.68
19216165--19216204	20	2.1	19	90	4	62	30	0	0	70	0.88
19216165--19216197	10	3.2	11	87	12	52	30	0	0	69	0.88
19216218--19216262	22	2.0	23	87	12	67	57	2	0	40	1.11
19216218--19216264	11	4.3	11	79	15	53	55	2	0	42	1.12
19220252--19220277	3	8.7	3	100	0	52	69	30	0	0	0.89
19229774--19229806	18	1.9	18	88	11	52	24	6	12	57	1.57
19230654--19230699	22	2.0	23	91	4	76	30	0	0	69	0.89
19232419--19232454	9	4.0	9	92	0	54	91	5	2	0	0.49
19232601--19232643	16	2.6	17	78	10	54	53	2	0	44	1.13
19233337--19233365	2	14.5	2	100	0	58	51	0	0	48	1.00
19235529--19235557	4	7.2	4	100	0	58	75	0	0	24	0.80
19239029--19239389	170	2.1	172	80	10	411	43	7	8	41	1.62
19238409--19241631	528	6.2	521	73	13	1522	41	9	7	41	1.66
19238281--19241631	177	19.4	176	74	12	2026	41	9	7	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19239856--19241479	878	1.8	876	80	7	1932	41	9	7	41	1.66
19241623--19241663	19	2.2	19	100	0	82	29	14	0	56	1.39
19241623--19241675	19	2.7	19	91	5	70	32	15	0	52	1.42
19241659--19246472	181	26.9	179	75	9	2983	41	9	8	39	1.69
19241857--19242222	192	1.9	195	80	6	431	42	9	9	37	1.71
19242053--19246233	534	7.8	537	75	9	2003	41	9	8	39	1.69
19246901--19246935	17	2.1	17	89	5	54	37	2	11	48	1.54
19246473--19250063	181	20.0	180	75	8	2452	41	9	8	40	1.69
19246712--19250063	360	9.3	349	74	10	1623	41	9	8	40	1.69
19246473--19272147	536	47.1	536	68	14	5187	41	9	8	40	1.69
19250306--19250662	192	1.8	195	80	6	429	43	9	8	38	1.68
19250493--19252178	180	9.4	177	74	9	1112	41	9	9	40	1.69
19250514--19254891	361	12.3	357	73	10	2285	41	9	8	39	1.69
19252868--19254902	176	11.4	176	72	11	835	41	11	8	39	1.71
19252240--19254908	358	7.5	353	74	10	1559	41	10	8	39	1.70
19253362--19254902	176	8.7	176	74	10	870	41	10	7	39	1.69
19252367--19254911	177	14.3	173	72	11	1085	41	10	8	39	1.70
19252271--19254842	535	4.8	531	79	7	1874	41	10	8	39	1.70
19254912--19260629	181	31.8	176	76	7	4050	41	10	8	40	1.69
19254909--19272141	543	31.8	541	72	11	7993	41	10	8	40	1.69
19254912--19272147	362	47.6	357	69	13	5734	41	10	8	40	1.69
19261015--19261062	18	2.8	16	87	9	60	43	8	0	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19261155--19263511	181	13.2	180	76	8	1709	40	10	8	40	1.70
19262192--19263511	179	7.4	179	78	9	1202	41	10	8	39	1.69
19255151--19263476	718	11.5	699	71	13	2362	41	9	8	40	1.69
19263522--19271686	181	45.6	178	74	9	4677	41	10	8	39	1.69
19263792--19271627	524	14.6	528	73	11	2885	41	9	8	39	1.69
19265728--19265761	16	2.1	16	89	10	52	41	11	8	38	1.73
19265567--19265884	171	1.9	169	80	5	372	42	10	7	40	1.66
19264403--19270709	358	17.6	348	70	13	916	41	10	8	40	1.69
19265736--19271686	180	33.2	177	72	11	2945	41	9	8	40	1.69
19271684--19272088	178	2.3	180	78	4	408	42	9	7	40	1.67
19272902--19274522	357	4.5	353	76	9	1111	40	8	9	42	1.68
19272904--19274522	182	9.0	180	77	7	1252	40	8	9	42	1.68
19301717--19301772	22	2.5	22	88	0	76	26	33	16	23	1.95
19309554--19309597	22	2.0	22	90	0	70	27	22	13	36	1.92
19311164--19311253	43	2.1	43	82	0	108	33	21	24	21	1.97
19320930--19320968	13	2.9	13	80	3	51	48	2	2	46	1.29
19321101--19321173	22	3.4	21	78	15	78	19	2	4	73	1.11
19321194--19321275	6	13.5	6	75	11	51	78	7	2	12	1.06
19321539--19321628	32	2.7	33	72	16	87	36	18	12	32	1.88
19322044--19322108	31	2.1	30	91	5	103	67	3	3	26	1.20
19322272--19322630	39	9.3	39	80	3	352	41	20	10	26	1.86
19322272--19322630	77	4.7	76	77	8	350	41	20	10	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19322272--19322630	116	3.1	114	85	5	463	41	20	10	26	1.86
19325199--19325279	40	2.0	40	100	0	162	37	28	9	24	1.87
19334648--19334689	19	2.2	20	86	4	59	21	4	4	69	1.26
19334977--19335043	23	3.0	21	72	10	62	22	4	2	70	1.19
19335004--19335049	17	2.5	19	80	16	53	19	4	2	73	1.10
19335070--19335105	18	1.9	18	88	5	54	72	5	0	22	1.05
19335106--19335161	19	2.9	19	81	5	60	73	7	3	16	1.20
19335108--19335155	25	1.9	25	87	8	71	72	8	2	16	1.18
19335074--19335166	6	15.2	6	78	7	71	74	6	3	16	1.16
19335107--19335161	25	2.2	25	80	6	67	74	7	3	14	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125