genome.fa.s46.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  91  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17823399--17824184	293	2.7	289	85	4	1028	33	12	15	38	1.85
17825562--17825883	159	2.0	158	87	0	455	41	12	13	32	1.82
17828243--17828268	12	2.2	12	100	0	52	46	0	7	46	1.31
17828434--17828985	64	8.9	62	73	12	249	33	14	12	39	1.83
17828533--17828985	64	7.3	62	74	15	253	33	14	11	39	1.82
17828662--17828886	115	2.0	114	89	0	342	35	14	11	38	1.82
17829605--17829642	13	3.0	13	80	3	51	44	0	0	55	0.99
17829595--17829679	42	2.1	40	82	8	100	49	0	1	49	1.08
17831292--17831353	31	2.0	31	87	3	88	9	9	11	69	1.37
17836091--17836135	22	2.0	22	83	8	56	26	2	6	64	1.30
17836370--17836400	7	4.6	7	96	4	55	74	0	0	25	0.82
17845919--17845960	19	2.2	19	86	0	57	9	2	38	50	1.48
17846074--17846572	20	25.5	20	71	12	254	16	2	34	47	1.58
17846219--17846301	32	2.6	32	90	3	123	14	0	33	51	1.42
17846225--17846285	12	5.4	12	71	15	58	16	0	29	54	1.43
17846283--17846333	26	2.0	26	88	7	77	17	1	31	49	1.58
17846407--17846463	19	3.0	20	82	7	64	21	1	31	45	1.62
17847391--17847759	145	2.6	145	81	6	405	38	14	16	30	1.89
17848161--17848212	18	2.9	18	81	18	65	0	0	17	82	0.66
17848155--17848237	25	3.3	26	75	17	86	0	1	15	83	0.72
17848155--17848213	16	3.5	17	81	9	77	0	0	15	84	0.62
17848155--17848235	27	2.9	28	85	5	94	0	1	16	82	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17848164--17848214	19	2.7	18	82	17	68	0	0	15	84	0.63
17848257--17848432	51	3.5	49	78	10	169	40	14	9	35	1.78
17848258--17848525	53	5.3	50	75	7	198	39	14	9	35	1.80
17848258--17848525	102	2.6	102	80	2	268	39	14	9	35	1.80
17863256--17863300	20	2.2	22	84	11	60	80	2	15	2	0.92
17864202--17864338	34	4.0	35	77	11	140	37	18	16	27	1.92
17864199--17864340	70	2.1	68	82	7	171	37	17	16	28	1.92
17864629--17864674	6	7.7	6	77	18	51	19	15	15	50	1.79
17864628--17864674	18	2.6	18	89	0	76	21	14	14	48	1.80
17864918--17865169	67	3.8	67	80	4	269	38	14	17	29	1.89
17864918--17865145	34	6.8	34	68	15	127	37	15	17	28	1.91
17865761--17865918	33	4.8	33	77	8	151	36	17	15	29	1.91
17865763--17865918	67	2.3	67	81	3	172	35	17	16	30	1.92
17866010--17866354	35	9.7	35	75	7	221	19	20	11	48	1.79
17866010--17866235	72	3.2	73	81	3	264	19	20	11	48	1.79
17866407--17866459	15	3.5	15	79	5	63	84	5	3	5	0.85
17866407--17866470	16	3.8	17	73	10	51	82	4	7	4	0.93
17870537--17870565	13	2.2	13	100	0	58	51	13	13	20	1.75
17877918--17878123	103	2.0	106	92	4	348	18	19	14	47	1.82
17880696--17881022	144	2.3	142	82	2	368	37	12	14	34	1.85
17885166--17885205	10	4.0	10	83	0	53	25	12	17	45	1.83
17885512--17885536	13	1.9	13	100	0	50	24	8	40	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17886943--17886998	29	2.0	28	92	3	94	19	0	19	60	1.36
17886945--17887040	30	3.2	31	77	10	94	19	1	16	62	1.39
17887007--17887072	25	2.6	25	73	23	66	16	0	18	65	1.28
17887014--17887083	35	2.0	34	81	15	81	17	0	20	62	1.32
17889320--17889356	3	12.3	3	94	0	65	64	2	0	32	1.07
17888983--17889547	189	3.0	188	90	4	849	51	7	8	32	1.60
17889515--17889622	6	18.2	6	84	12	118	66	0	3	28	1.15
17889515--17889622	9	12.1	9	82	13	118	66	0	3	28	1.15
17889871--17890036	40	4.2	40	73	7	142	43	15	12	28	1.83
17891672--17891717	17	2.7	17	83	6	58	65	8	10	15	1.47
17905703--17905842	58	2.3	60	83	11	162	31	8	7	52	1.59
17906906--17906942	3	12.3	3	100	0	74	67	0	0	32	0.91
17907847--17907887	15	2.5	17	88	11	59	29	0	0	70	0.87
17916546--17916571	10	2.6	10	100	0	52	80	0	11	7	0.89
17917243--17917305	8	7.3	9	77	22	57	53	0	25	20	1.45
17917243--17917281	4	9.0	4	84	15	51	51	0	25	23	1.49
17917380--17917570	104	1.8	103	83	3	249	33	12	14	39	1.83
17917362--17918240	49	17.6	49	75	8	596	35	12	13	39	1.82
17917599--17918240	148	4.3	147	81	5	673	37	11	12	38	1.80
17917598--17918246	50	13.0	49	78	7	517	37	12	12	38	1.81
17927127--17927265	61	2.3	60	82	7	165	33	13	10	42	1.78
17927245--17927391	61	2.4	61	80	12	165	42	17	9	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17927195--17927671	255	1.9	256	82	6	617	42	13	9	34	1.76
17927994--17928137	62	2.3	62	79	4	155	43	13	12	30	1.82
17928099--17928261	63	2.6	63	84	1	202	38	11	11	38	1.78
17928902--17928953	17	3.1	17	71	13	54	15	3	7	73	1.21
17929597--17929682	19	4.5	19	80	8	77	40	39	1	18	1.58
17929650--17929737	7	12.7	7	80	10	65	47	31	0	20	1.50
17929844--17929882	13	3.0	13	85	10	53	30	23	5	41	1.76
17936067--17936095	11	2.6	11	100	0	58	58	6	0	34	1.25
17936155--17936210	10	5.4	10	78	6	58	58	8	3	28	1.45
17936292--17936477	10	19.0	9	68	15	61	59	7	1	32	1.33
17936261--17936392	10	13.4	10	73	16	73	56	6	0	37	1.24
17936545--17936605	28	2.2	27	85	8	79	29	4	6	59	1.44
17936546--17936936	9	40.6	9	64	18	87	32	2	5	58	1.35
17936546--17936914	10	38.3	10	66	17	54	32	2	5	58	1.35
17936863--17936914	20	2.5	20	87	3	68	25	1	3	69	1.16
17936797--17936914	30	4.1	27	69	20	71	27	1	5	65	1.23
17939417--17939488	34	2.1	35	92	7	121	37	15	18	29	1.91
17950120--17950145	13	2.0	13	100	0	52	30	23	7	38	1.83
17951001--17951044	15	3.0	15	78	15	56	63	6	15	13	1.49
17953482--17953520	16	2.4	16	91	0	60	66	0	2	30	1.05
17957374--17957405	16	1.9	17	93	6	57	75	0	0	25	0.81
17957411--17957465	27	2.1	27	93	3	94	60	0	10	29	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17957416--17957473	27	2.2	27	84	3	73	62	0	13	24	1.32
17962281--17962313	17	1.9	17	100	0	66	30	0	9	60	1.27
17962995--17963046	26	2.0	27	84	3	70	55	5	1	36	1.35
17963407--17963472	33	2.0	33	90	0	105	51	25	3	19	1.61
17963768--17963862	47	2.0	47	85	0	127	38	23	14	23	1.91
17964905--17964939	2	17.5	2	100	0	70	0	51	0	48	1.00
17965369--17965399	4	7.8	4	92	0	53	3	74	0	22	0.96
17966847--17966899	27	2.0	27	88	7	81	15	26	30	28	1.96
17968776--17968858	41	2.0	41	100	0	166	33	4	25	36	1.77
17970472--17970515	18	2.4	18	92	7	72	72	0	2	25	0.96
17971174--17971244	29	2.7	25	75	23	65	60	1	0	38	1.06
17971968--17972026	18	3.0	20	79	18	70	67	0	0	32	0.91
17972963--17973019	11	5.3	11	79	10	55	77	5	1	15	1.03
17974279--17974486	86	2.4	86	79	2	213	44	13	13	27	1.82
17974278--17974486	43	4.9	42	76	11	165	44	13	14	27	1.83
17974938--17975001	17	3.7	18	75	10	71	31	12	20	35	1.90
17975094--17975161	35	1.9	35	90	0	109	39	11	13	35	1.81
17975114--17975213	17	5.8	17	72	8	67	41	14	11	34	1.80
17975137--17975237	52	1.9	52	82	4	123	44	13	10	30	1.79
17975461--17975525	21	3.0	22	67	13	53	43	18	10	27	1.83
17975430--17975585	44	3.6	44	83	5	199	43	17	8	30	1.79
17975317--17975585	22	12.2	22	63	14	90	43	15	9	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17975398--17975599	44	4.6	44	77	9	196	43	16	7	32	1.77
17975876--17975926	20	2.6	20	81	9	61	35	13	15	35	1.87
17977005--17977035	12	2.5	13	94	5	55	12	12	0	74	1.08
17982002--17982040	17	2.3	17	86	8	53	61	10	5	23	1.48
17984830--17984872	11	3.7	11	79	11	50	62	0	0	37	0.95
17985057--17985098	21	2.0	22	85	4	59	47	0	4	47	1.23
17985658--17985696	16	2.3	18	82	13	55	71	0	23	5	1.05
17985947--17986001	20	2.8	19	76	13	58	58	1	1	38	1.20
17986068--17986111	16	2.5	17	85	10	54	65	0	0	34	0.93
17986312--17986375	22	3.0	21	78	13	60	78	7	3	10	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125