genome.fa.s46.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  55  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10994904--10994947	3	14.7	3	100	0	88	31	0	0	68	0.90
10995083--10995153	20	3.4	20	78	14	81	25	1	5	67	1.20
10995083--10995153	23	3.2	23	75	13	78	25	1	5	67	1.20
10996690--10997165	132	3.6	132	81	3	478	39	17	18	24	1.92
10997078--10997275	110	1.8	110	83	2	263	41	18	17	23	1.90
10996783--10997498	374	1.9	375	81	5	876	40	17	18	24	1.91
10996947--10997407	242	1.9	242	85	1	629	40	16	17	24	1.90
10997364--10997429	22	3.0	21	76	6	69	34	15	19	30	1.93
10997160--10997486	132	2.5	132	81	1	377	41	16	18	24	1.90
10997441--10997557	60	2.0	59	89	1	180	49	17	16	17	1.80
10997556--10997611	22	2.5	23	82	5	71	35	16	16	32	1.90
10997760--10998033	129	2.1	129	82	5	324	37	15	13	33	1.86
10999858--10999924	26	2.8	24	80	10	73	5	8	4	80	1.01
10999858--10999940	13	6.2	12	73	21	51	7	8	3	80	1.00
10999858--10999942	12	6.6	12	71	26	59	8	8	3	80	1.02
11006531--11006587	22	2.7	20	78	10	60	15	1	29	52	1.53
11006643--11006978	30	11.4	30	75	5	213	20	2	31	45	1.64
11006959--11006989	15	2.1	15	94	5	55	19	3	25	51	1.62
11007163--11007203	3	13.7	3	100	0	82	31	0	0	68	0.90
11008772--11009047	137	2.0	137	99	0	543	30	18	22	28	1.97
11012434--11012723	155	1.9	155	83	9	383	42	5	5	46	1.48
11016821--11016846	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11018825--11018862	2	19.0	2	100	0	76	0	50	0	50	1.00
11022188--11022256	32	2.2	32	84	5	86	26	1	8	63	1.31
11022479--11022513	13	2.7	13	81	0	52	40	5	2	51	1.40
11027003--11027031	7	4.1	7	100	0	58	55	0	0	44	0.99
11033937--11034003	29	2.5	26	83	11	73	17	1	4	76	1.04
11033973--11034031	19	3.2	18	83	7	64	22	3	1	72	1.08
11040050--11040087	15	2.4	16	86	4	51	39	5	2	52	1.38
11040430--11040532	47	2.2	46	91	3	161	57	5	31	5	1.46
11042666--11042695	2	15.0	2	92	0	51	46	0	3	50	1.18
11045992--11046097	55	1.9	55	86	0	149	34	18	29	16	1.94
11047940--11047993	25	2.2	25	83	12	67	24	1	3	70	1.13
11048213--11048270	16	3.7	15	88	6	71	48	5	0	46	1.24
11051812--11051858	7	6.9	7	76	13	53	14	0	2	82	0.75
11053312--11053351	13	3.0	13	81	3	53	55	2	2	40	1.27
11053770--11053803	17	2.0	17	88	0	50	70	0	0	29	0.87
11055302--11055375	36	2.0	37	84	2	96	33	1	4	60	1.24
11056600--11056657	30	1.9	30	86	13	84	65	0	1	32	1.03
11056600--11056649	15	3.3	15	80	8	57	68	0	0	32	0.90
11056628--11056663	19	2.0	17	89	10	54	61	0	2	36	1.11
11056758--11056804	13	3.1	15	82	11	53	65	10	0	23	1.23
11059274--11059327	27	2.0	27	100	0	108	62	14	11	11	1.53
11059332--11059419	3	29.7	3	93	2	151	65	2	0	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11064167--11064225	27	2.2	27	87	0	82	37	1	0	61	1.07
11073649--11073771	62	2.0	63	86	1	176	34	20	8	36	1.84
11075250--11075301	26	1.9	27	84	7	70	40	19	0	40	1.51
11076711--11076763	26	2.1	26	82	3	63	66	0	5	28	1.15
11078363--11078413	17	2.9	17	81	13	68	31	0	1	66	1.03
11078483--11078526	10	4.4	10	80	11	54	31	0	0	68	0.90
11078867--11078893	2	13.5	2	100	0	54	48	0	0	51	1.00
11082872--11083248	205	1.8	205	80	6	458	34	11	7	46	1.68
11083822--11083915	44	2.2	43	86	7	129	42	11	13	31	1.81
11083887--11084402	48	10.8	48	80	7	439	39	21	10	28	1.87
11083887--11084403	188	2.7	191	80	7	502	39	21	10	28	1.87
11095054--11095084	16	1.9	16	93	0	53	9	3	0	87	0.66
11095452--11095534	43	1.9	43	97	0	157	37	10	8	43	1.70
11097175--11097217	23	1.9	22	85	4	59	23	16	18	41	1.89
11097372--11097439	25	2.6	27	81	6	77	77	1	16	4	0.99
11097393--11097453	29	2.1	30	90	3	97	80	0	9	9	0.91
11097444--11097479	3	12.0	3	88	11	56	66	2	0	30	1.06
11099068--11099177	37	2.9	38	71	5	107	37	18	9	35	1.82
11099179--11099289	38	3.0	37	67	18	95	36	23	9	29	1.87
11103704--11103743	9	4.1	9	82	17	53	85	0	15	0	0.61
11103701--11103740	21	1.9	21	100	0	80	82	0	17	0	0.67
11103696--11103743	21	2.3	20	89	6	78	81	0	16	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11103867--11103941	33	2.3	33	88	0	105	28	13	21	37	1.91
11104046--11104434	46	8.4	46	71	10	213	34	9	11	43	1.73
11104046--11104434	92	4.2	91	72	11	276	34	9	11	43	1.73
11105934--11105980	20	2.3	21	89	10	71	65	0	27	6	1.16
11107412--11107444	16	2.0	17	88	5	50	39	9	0	51	1.34
11109537--11109570	17	2.0	17	88	0	50	47	0	2	50	1.16
11111180--11111214	2	17.5	2	93	0	61	51	0	0	48	1.00
11111334--11111378	3	15.3	3	95	4	83	68	0	0	31	0.89
11115598--11115711	38	3.0	38	86	0	174	28	19	10	41	1.84
11117937--11117979	20	2.2	20	95	0	77	34	37	2	25	1.69
11119052--11119085	2	17.0	2	87	0	50	50	0	2	47	1.16
11124057--11124192	53	2.5	54	81	7	152	36	8	6	48	1.61
11125416--11125455	19	2.2	18	90	4	62	67	0	2	30	1.04
11125413--11125451	9	4.3	9	84	9	53	66	0	2	30	1.05
11125480--11125512	15	2.1	16	88	5	50	81	3	0	15	0.80
11126862--11126935	6	12.8	6	76	17	50	75	0	5	18	0.99
11126862--11126929	18	3.9	17	77	21	61	73	0	5	20	1.04
11126829--11126934	35	3.1	33	77	15	92	72	0	6	19	1.12
11126870--11126933	28	2.3	27	84	12	85	75	0	6	18	1.01
11126869--11126930	24	2.6	24	82	10	74	74	0	6	19	1.03
11126863--11126930	17	3.9	18	83	9	79	73	0	5	20	1.04
11127798--11127962	3	58.3	3	67	17	59	59	3	3	33	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11127789--11127827	20	1.9	20	84	5	51	76	0	2	20	0.90
11127843--11127959	5	22.2	5	72	19	78	56	3	3	36	1.33
11127843--11127962	12	10.8	11	75	12	88	56	3	3	36	1.32
11127840--11127960	25	4.6	26	74	15	106	57	3	3	36	1.32
11127840--11127962	8	13.7	9	73	21	68	56	3	3	36	1.32
11127878--11127982	50	2.1	49	82	7	122	56	6	1	35	1.37
11130459--11130622	3	57.3	3	67	18	55	59	3	3	33	1.33
11130450--11130488	20	1.9	20	84	5	51	76	0	2	20	0.90
11130504--11130619	5	22.2	5	72	20	78	56	3	3	37	1.33
11130501--11130620	12	9.6	12	75	15	77	56	3	3	36	1.32
11130501--11130622	8	13.7	9	73	23	68	56	3	3	36	1.32
11130538--11130642	50	2.1	49	82	7	122	56	6	1	35	1.37
11131255--11131769	175	2.9	176	74	6	465	45	13	21	19	1.85
11138283--11138321	18	2.1	19	85	4	53	76	2	5	15	1.06
11138299--11138378	3	28.3	3	75	12	62	62	2	6	28	1.32
11138336--11138454	5	23.2	5	72	16	75	55	4	4	36	1.39
11138300--11138381	34	2.4	34	83	8	94	62	2	6	29	1.32
11142106--11142151	10	4.5	11	78	13	53	58	4	0	36	1.18
11142107--11142548	9	46.6	9	69	15	130	55	5	1	37	1.31
11142133--11142230	26	3.7	26	90	2	133	55	1	0	43	1.06
11142107--11142221	17	6.3	17	77	12	113	53	2	0	43	1.14
11142314--11142359	21	2.2	22	80	11	60	39	10	0	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11142383--11142510	8	14.6	8	73	15	69	60	2	1	35	1.19
11142356--11142562	53	3.8	52	75	12	177	57	4	2	35	1.31
11142687--11142726	18	2.3	17	86	4	53	77	10	0	12	0.99
11143047--11143088	18	2.2	20	87	8	61	54	0	0	45	0.99
11143060--11143096	19	1.9	20	88	5	58	51	2	0	45	1.15
11143226--11143271	11	4.4	10	86	10	65	43	4	0	52	1.21
11143286--11143359	9	7.8	9	75	14	53	33	0	5	60	1.19
11143213--11143380	10	17.0	9	71	16	61	36	1	5	56	1.30
11143346--11143383	11	3.6	11	79	13	53	26	0	13	60	1.33
11145460--11145504	17	2.6	17	83	16	58	17	6	11	64	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125