genome.fa.s46.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  86  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16969394--16969442	17	2.8	17	81	9	55	24	6	12	57	1.58
16970032--16970082	17	2.9	17	79	2	57	76	7	1	13	1.09
16972863--16972956	36	2.6	36	81	3	109	28	27	11	31	1.92
16975122--16975161	18	2.2	18	91	8	64	30	5	0	65	1.14
16975121--16975163	19	2.4	17	85	14	59	30	4	0	65	1.13
16977249--16977326	15	5.1	15	78	17	88	43	0	3	52	1.19
16977255--16977319	6	9.7	7	72	21	59	44	0	3	52	1.16
16977255--16977302	13	3.5	13	86	10	69	45	0	2	52	1.12
16977228--16977302	28	2.8	27	86	8	91	42	1	1	54	1.17
16977212--16977342	18	7.5	17	70	22	76	44	0	3	51	1.25
16977646--16977735	24	3.6	25	71	24	66	32	0	3	64	1.10
16979003--16979055	21	2.6	19	80	16	61	18	3	0	77	0.92
16979006--16979056	26	2.0	25	81	14	59	19	3	0	76	0.94
16987881--16988058	98	1.8	98	86	0	257	42	19	7	30	1.79
16988227--16988292	33	2.0	33	96	0	123	31	13	3	51	1.56
16988446--16988503	24	2.5	24	83	8	66	41	1	0	56	1.09
16992129--16992194	28	2.2	30	89	7	100	42	0	7	50	1.31
16995510--16995642	43	3.1	43	81	1	160	30	15	13	41	1.85
16995514--16995671	86	1.9	84	82	5	201	29	13	12	44	1.81
16997003--16997067	6	10.8	6	71	12	53	15	6	1	76	1.05
16997050--16997108	4	15.0	4	77	10	59	22	6	0	71	1.09
16997328--16997370	21	2.0	21	86	8	61	53	2	2	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16997961--16997995	18	1.9	18	94	0	61	2	11	0	85	0.69
16998660--16998697	19	1.9	19	89	5	58	10	7	2	78	1.04
17000708--17000798	12	7.1	12	73	8	56	23	7	18	50	1.72
17000726--17000832	27	4.0	28	86	7	134	22	5	21	50	1.69
17000708--17000825	14	9.1	13	71	8	62	23	7	19	49	1.74
17000727--17000855	27	4.8	26	85	8	129	20	5	22	51	1.68
17000720--17000857	14	10.5	13	66	5	64	21	6	21	50	1.71
17001115--17001153	3	13.0	3	100	0	78	33	0	0	66	0.92
17001877--17001921	22	2.0	22	86	0	63	8	11	6	73	1.25
17002630--17002687	13	4.2	14	75	18	59	31	0	3	65	1.09
17003038--17003080	23	1.9	22	85	4	59	16	2	6	74	1.14
17003190--17003249	31	1.9	31	86	6	86	31	16	26	25	1.96
17003451--17003621	32	5.3	32	73	9	141	32	14	14	39	1.86
17003483--17003621	65	2.2	64	82	8	158	32	12	15	40	1.84
17004525--17004564	14	2.6	15	85	14	55	5	20	0	75	0.99
17004503--17004589	34	2.6	32	76	20	79	6	20	0	72	1.07
17005107--17005166	31	1.9	32	89	3	95	3	15	6	75	1.15
17005844--17005868	9	2.8	9	100	0	50	8	0	0	92	0.40
17009580--17009654	14	5.8	13	81	6	64	21	9	18	50	1.74
17009598--17009654	27	2.2	26	83	3	69	19	8	19	52	1.71
17009964--17009994	3	10.3	3	100	0	62	35	0	0	64	0.94
17010762--17010829	34	2.0	34	100	0	136	11	14	20	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17011637--17011711	3	24.0	3	78	2	60	32	0	6	61	1.22
17015564--17015608	3	15.0	3	95	0	81	0	35	0	64	0.94
17022679--17022717	19	2.1	19	90	0	60	17	10	17	53	1.71
17022947--17022981	2	17.5	2	100	0	70	51	0	0	48	1.00
17023845--17023887	6	7.5	6	87	10	54	37	9	0	53	1.33
17027259--17027321	31	2.0	31	87	0	90	38	11	15	34	1.83
17027857--17027917	22	2.8	22	72	5	61	47	4	11	36	1.61
17028159--17028216	22	2.6	22	78	10	55	58	5	3	32	1.37
17028169--17028336	22	7.7	22	75	5	128	48	6	6	38	1.55
17028417--17028477	22	2.8	22	73	9	61	59	4	4	31	1.40
17028691--17028738	22	2.2	22	88	7	71	43	8	6	41	1.60
17029063--17029146	44	1.9	44	85	0	114	46	4	13	35	1.64
17029046--17029149	44	2.4	44	78	3	111	48	3	12	35	1.59
17029431--17029562	22	6.0	22	70	5	79	44	5	11	38	1.63
17029431--17029555	44	2.8	44	80	4	119	44	5	12	37	1.65
17029473--17029562	44	2.0	44	86	0	126	43	3	11	42	1.56
17029582--17029620	11	3.5	11	82	0	51	56	2	0	41	1.13
17029473--17029664	96	2.0	96	81	4	226	45	3	8	41	1.53
17029594--17029775	44	4.1	43	72	12	138	45	4	8	41	1.56
17029594--17029798	22	9.3	22	71	6	112	45	5	8	40	1.57
17030068--17030127	21	3.0	20	79	18	70	51	3	3	41	1.35
17030105--17030193	21	4.1	22	78	9	76	50	7	5	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17032910--17032938	2	14.5	2	100	0	58	0	0	48	51	1.00
17034684--17034708	12	2.1	12	100	0	50	76	0	16	8	1.02
17037515--17037775	129	2.0	129	96	0	477	20	22	32	23	1.98
17040322--17040351	15	2.0	15	93	0	51	13	0	3	83	0.77
17041408--17041481	30	2.5	30	73	8	78	28	4	1	66	1.18
17041408--17041484	4	18.0	4	76	12	64	28	3	1	66	1.17
17041601--17041793	57	3.3	58	78	8	171	48	5	7	38	1.56
17041688--17041919	126	1.8	128	87	5	355	47	5	12	35	1.63
17041794--17041989	57	3.6	55	80	11	192	46	6	12	34	1.66
17045971--17046024	7	6.8	8	81	10	58	79	0	3	16	0.87
17045993--17046041	17	2.8	18	81	6	64	77	0	12	10	0.99
17045979--17046025	8	5.6	8	85	9	58	80	0	4	14	0.85
17047218--17047310	18	5.3	18	76	3	82	45	12	5	36	1.66
17047218--17047311	35	2.7	36	81	3	111	44	12	6	36	1.68
17047232--17047334	18	5.8	18	74	13	88	46	10	6	35	1.65
17047325--17047368	16	2.8	16	76	10	54	27	11	11	50	1.72
17047506--17047569	33	1.9	34	83	3	85	32	10	12	43	1.77
17047600--17047631	15	2.1	15	94	0	55	28	6	15	50	1.68
17047979--17048016	18	2.0	19	90	10	60	21	0	0	78	0.74
17058666--17058711	19	2.3	20	88	3	67	80	0	15	4	0.86
17059423--17059492	33	2.1	33	91	0	113	27	14	22	35	1.93
17059727--17060067	43	7.9	43	80	3	326	24	12	17	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17059727--17060067	129	2.6	129	83	2	423	24	12	17	45	1.83
17061323--17061351	2	14.5	2	100	0	58	51	0	48	0	1.00
17060198--17062498	593	4.0	590	87	4	3356	38	12	17	31	1.87
17064276--17064626	57	6.3	55	73	16	262	48	5	9	35	1.60
17064317--17064625	57	5.5	55	76	11	272	48	5	10	35	1.61
17064288--17064616	113	3.0	110	82	7	359	50	5	10	34	1.59
17067434--17067464	3	10.3	3	92	0	53	61	0	0	38	0.96
17067436--17067467	15	2.1	15	100	0	64	59	0	0	40	0.97
17069706--17070417	59	11.7	59	78	12	705	35	12	7	45	1.69
17070168--17070427	60	4.2	61	87	8	377	32	10	7	49	1.65
17069857--17070487	314	2.0	311	91	4	1013	36	10	6	46	1.65
17070488--17070553	12	5.7	11	76	15	62	81	3	1	13	0.87
17070863--17070905	19	2.3	19	95	0	77	25	16	27	30	1.97
17071560--17071654	12	7.8	12	69	19	54	65	7	0	27	1.19
17071553--17071655	16	6.6	15	69	19	59	65	7	0	27	1.20
17071852--17071914	1	63.0	1	80	0	72	0	0	9	90	0.45
17071844--17071914	9	7.7	9	86	12	99	0	0	11	88	0.51
17071844--17071913	27	2.5	28	95	2	124	0	0	11	88	0.51
17071921--17072288	40	9.0	41	89	8	540	37	21	18	22	1.94
17071921--17072288	123	3.0	122	91	5	575	37	21	18	22	1.94
17071921--17072288	163	2.2	162	91	5	598	37	21	18	22	1.94
17073507--17073561	21	2.7	19	79	20	58	1	18	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17073507--17073577	25	2.7	25	84	8	88	2	16	0	80	0.83
17073509--17073566	20	2.8	20	82	10	73	1	17	0	81	0.78
17073509--17073567	10	5.8	10	76	7	57	1	16	0	81	0.78
17077444--17078088	59	10.7	58	78	13	585	35	13	7	44	1.72
17077434--17077842	117	3.4	118	87	9	491	32	13	8	45	1.74
17077674--17078159	247	2.0	245	92	2	805	37	11	6	44	1.67
17079134--17079279	31	4.4	33	68	17	97	67	5	0	26	1.17
17079165--17079274	16	6.8	16	69	20	52	65	6	0	28	1.17
17080533--17080642	55	2.0	55	94	0	193	41	11	9	37	1.74
17080933--17081006	14	5.3	14	73	16	64	22	0	28	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125