genome.fa.s46.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  22  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3916266--3916303	19	2.0	19	90	10	60	65	0	0	34	0.93
3920615--3920643	9	3.3	9	95	4	51	89	0	0	10	0.48
3920660--3920706	23	2.0	23	92	8	78	29	21	14	34	1.93
3922142--3922230	12	7.8	12	73	16	57	62	0	0	37	0.95
3922142--3922192	6	8.5	6	75	16	52	64	0	0	35	0.94
3922143--3922226	36	2.3	35	82	9	98	63	0	0	36	0.95
3923989--3924027	15	2.6	15	83	0	51	35	0	7	56	1.28
3924078--3924119	22	1.9	22	90	9	68	38	0	0	61	0.96
3924077--3924124	10	4.5	10	82	12	51	35	0	2	62	1.07
3928066--3928095	3	10.0	3	92	0	51	33	3	0	63	1.11
3930639--3930682	14	3.2	13	81	12	52	40	0	2	56	1.11
3930642--3930683	21	2.0	21	90	0	66	35	0	2	61	1.09
3932850--3932879	15	2.0	15	93	0	51	40	0	3	56	1.16
3935786--3935885	29	3.3	29	79	12	94	47	0	4	49	1.20
3935841--3935884	15	2.7	17	79	13	56	47	0	2	50	1.13
3940322--3940360	20	2.0	19	85	14	53	48	0	7	43	1.31
3942286--3942346	18	3.4	19	77	8	65	31	6	34	27	1.83
3947609--3947660	6	8.7	6	100	0	104	34	0	15	50	1.45
3954454--3954498	23	2.0	21	87	8	63	35	0	4	60	1.17
3959038--3959076	20	1.9	21	84	5	53	38	0	0	61	0.96
3960594--3960797	108	1.9	108	95	0	372	45	7	7	39	1.61
3960780--3960808	10	3.0	10	95	5	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3971196--3971408	108	2.0	108	97	0	399	44	9	22	23	1.83
3974154--3974230	38	2.0	38	94	0	136	59	3	2	33	1.29
3974154--3974215	16	3.5	16	71	23	52	59	1	3	35	1.23
3974273--3974332	27	2.3	26	85	2	75	36	8	0	55	1.30
3979730--3979762	8	4.1	8	96	0	57	60	3	0	36	1.12
3983110--3983135	1	26.0	1	100	0	52	0	100	0	0	0.00
3990788--3990817	14	2.1	14	93	6	51	70	0	3	26	1.03
3990769--3990811	22	2.0	22	90	0	68	62	0	0	37	0.95
3990786--3990843	26	2.3	25	80	16	66	67	0	5	27	1.12
3991201--3991277	29	2.6	30	80	12	88	36	3	5	54	1.41
3991289--3991396	30	3.7	28	81	9	117	52	1	4	40	1.33
3993071--3993146	37	2.1	37	97	0	143	30	25	14	30	1.95
3994575--3994601	2	13.5	2	100	0	54	0	0	48	51	1.00
3994603--3994630	2	14.0	2	100	0	56	50	0	0	50	1.00
4002253--4002279	14	1.9	14	100	0	54	44	3	22	29	1.70
4003447--4003502	27	2.1	27	89	0	85	37	8	0	53	1.32
4004026--4004055	15	2.0	15	93	0	51	46	16	6	30	1.73
4009032--4009087	29	1.9	29	82	7	69	55	5	3	35	1.40
4009191--4009514	136	2.4	131	82	10	384	43	7	8	40	1.64
4011114--4011162	22	2.3	20	83	13	62	42	0	0	57	0.99
4012183--4012224	19	2.2	19	91	4	66	35	0	0	64	0.94
4013454--4013490	13	3.0	13	80	15	51	35	2	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4013854--4013937	25	3.3	25	70	14	64	53	1	1	44	1.16
4013898--4013944	20	2.2	21	85	11	60	53	0	2	44	1.12
4013983--4014015	15	2.2	15	89	10	50	48	0	3	48	1.17
4013984--4014131	12	11.7	12	67	25	58	47	0	4	48	1.20
4014078--4014151	17	4.3	18	77	19	77	52	0	0	47	1.00
4014078--4014151	35	2.1	35	90	7	116	52	0	0	47	1.00
4014129--4014166	16	2.4	16	95	4	69	55	0	0	44	0.99
4036907--4036945	18	2.1	19	85	9	53	43	2	0	53	1.14
4037794--4037859	18	3.5	17	68	20	51	39	1	3	56	1.24
4037776--4037827	22	2.2	25	83	10	65	40	0	3	55	1.18
4048012--4048063	22	2.5	22	93	6	90	50	0	0	50	1.00
4048094--4048132	19	2.0	20	85	14	55	53	0	0	46	1.00
4053231--4053268	6	6.3	6	87	0	58	26	0	18	55	1.43
4054609--4054641	15	2.2	15	94	0	57	45	21	21	12	1.84
4055605--4055648	22	2.0	22	86	0	61	36	9	11	43	1.72
4059752--4059795	22	2.0	22	95	0	79	31	11	13	43	1.80
4066644--4066733	3	30.0	3	90	0	81	11	33	1	54	1.43
4067144--4067183	15	2.7	15	84	7	55	32	0	0	67	0.91
4067235--4067268	9	3.6	9	92	8	50	29	0	0	70	0.87
4067232--4067270	11	3.5	11	82	10	53	35	0	0	64	0.94
4068102--4068136	17	2.1	17	89	10	54	62	0	0	37	0.95
4069593--4069737	52	2.8	52	88	2	202	37	8	27	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4070238--4070328	25	3.6	25	70	11	69	35	8	34	21	1.85
4070296--4070363	25	2.9	23	75	14	75	35	8	32	23	1.86
4070258--4070363	50	2.2	48	83	6	124	35	8	33	21	1.84
4070636--4070792	52	3.0	51	83	5	172	38	8	26	26	1.84
4078669--4078728	29	2.1	29	93	0	102	41	13	13	31	1.83
4078670--4078735	29	2.3	28	87	7	89	43	15	12	28	1.82
4083645--4083670	3	8.7	3	100	0	52	69	0	30	0	0.89
4084076--4084112	2	18.5	2	94	0	65	48	0	2	48	1.15
4091587--4091755	39	4.4	38	81	2	176	25	11	17	45	1.82
4091742--4091862	38	3.2	38	80	2	145	26	12	18	42	1.85
4091761--4091891	37	3.4	38	76	4	129	25	12	22	39	1.89
4093010--4093054	15	2.9	15	86	3	54	15	2	2	80	0.92
4094823--4094864	3	14.3	3	95	5	77	30	0	0	69	0.89
4096395--4096455	17	3.5	17	70	18	54	55	1	0	42	1.09
4096438--4096503	31	2.2	30	86	2	87	40	4	1	53	1.31
4098261--4098286	2	13.0	2	100	0	52	50	0	0	50	1.00
4099985--4100128	77	1.9	77	89	2	227	27	3	18	50	1.63
4100794--4100869	11	7.2	11	76	8	77	42	0	5	52	1.24
4105804--4105914	36	2.9	40	85	10	135	41	18	23	16	1.90
4107969--4108002	8	4.1	8	88	7	50	23	0	0	76	0.79
4108000--4108055	21	2.7	21	81	10	71	39	1	1	57	1.20
4108052--4108102	24	2.1	24	85	7	68	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4107976--4108096	10	12.7	10	68	19	55	36	0	0	61	1.07
4109841--4109918	27	3.0	26	80	10	88	38	0	0	61	0.96
4120914--4121017	4	25.5	4	69	21	56	21	2	4	71	1.18
4120893--4121017	30	4.0	31	71	18	80	21	2	5	70	1.20
4120911--4121017	30	3.4	30	78	17	103	21	2	4	71	1.18
4120903--4121016	11	10.4	11	70	19	69	22	2	4	70	1.18
4121132--4121395	121	2.2	120	89	0	393	46	7	7	37	1.63
4121158--4121406	120	2.1	121	89	0	383	46	7	7	38	1.61
4121441--4121487	17	2.7	17	90	3	67	53	2	0	44	1.12
4122807--4122871	3	21.7	3	96	0	121	33	1	0	64	1.03
4122809--4122938	9	14.1	9	79	13	70	25	3	2	68	1.18
4123254--4123298	16	2.8	15	78	15	54	57	0	4	37	1.19
4123059--4123559	116	4.3	115	82	10	509	44	7	8	40	1.62
4123374--4123413	15	2.6	16	84	15	57	55	0	2	42	1.13
4123373--4123407	15	2.2	16	95	5	63	51	0	0	48	1.00
4123486--4123532	18	2.6	17	83	12	58	57	0	2	40	1.11
4124647--4124686	6	6.5	6	85	2	53	60	0	2	37	1.11
4124647--4124694	18	2.8	16	84	12	51	56	0	4	39	1.19
4127822--4127890	11	6.7	10	69	12	50	34	1	1	62	1.13
4127857--4127898	20	2.0	20	86	4	57	42	0	0	57	0.99
4127883--4127943	23	2.5	24	81	5	70	37	0	3	59	1.14
4127955--4128082	40	3.2	39	76	15	104	57	0	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4128037--4128078	21	2.0	20	82	13	50	61	0	0	38	0.96
4129679--4129756	27	3.0	26	80	10	88	38	0	0	61	0.96
4137190--4137243	24	2.1	25	83	10	65	20	3	5	70	1.23
4140760--4140793	3	11.3	3	87	12	52	29	0	0	70	0.87
4140780--4140883	4	25.5	4	69	18	54	21	2	4	71	1.18
4140780--4140861	29	2.7	31	73	19	84	20	2	6	70	1.20
4140765--4140823	9	6.7	9	77	11	52	23	0	3	72	0.99
4140774--4140883	30	3.6	28	75	22	96	21	2	4	70	1.18
4140760--4140882	11	11.4	11	73	16	64	23	2	4	69	1.17
4140998--4141260	119	2.2	120	88	1	384	46	7	7	37	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125