genome.fa.s46.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  80  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16111277--16111326	13	4.1	13	80	10	52	66	4	6	24	1.32
16112111--16112150	2	20.0	2	100	0	80	50	0	0	50	1.00
16117875--16117933	3	20.3	3	87	6	86	33	1	1	62	1.15
16118303--16118351	21	2.4	20	82	3	53	14	4	28	53	1.59
16118802--16118882	13	6.2	13	73	11	67	16	3	3	76	1.07
16122452--16122496	20	2.3	20	96	3	83	26	26	20	26	1.99
16123604--16123635	8	4.0	8	100	0	64	25	0	37	37	1.56
16136384--16136411	11	2.5	11	100	0	56	75	0	17	7	1.03
16141695--16141907	61	3.4	63	73	7	202	33	13	13	39	1.84
16141862--16142122	130	2.0	130	85	8	354	37	9	18	34	1.84
16142048--16142243	62	3.2	60	80	9	207	39	14	15	30	1.88
16143232--16143287	25	2.2	25	81	12	62	57	1	0	41	1.09
16143954--16143996	22	1.9	23	90	4	70	30	0	4	65	1.13
16152830--16152873	23	1.9	23	100	0	88	50	9	6	34	1.61
16154698--16154745	25	1.9	25	82	0	60	41	2	4	52	1.32
16154817--16154863	23	2.2	20	88	11	67	44	4	2	48	1.34
16155913--16155977	17	3.8	17	79	0	67	63	7	1	27	1.31
16157911--16157948	20	1.9	20	84	10	51	44	2	28	23	1.67
16159372--16159432	28	2.1	29	85	8	81	44	11	13	31	1.79
16161414--16161462	18	2.7	18	78	12	55	34	36	2	26	1.68
16161471--16161519	18	2.7	18	77	0	53	30	32	4	32	1.77
16162966--16163003	18	2.1	18	85	9	51	15	2	5	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16164491--16164547	30	1.9	30	100	0	114	42	14	12	31	1.82
16164499--16164564	30	2.2	30	86	2	89	46	18	12	22	1.81
16166297--16166335	19	2.1	19	95	0	69	28	0	10	61	1.28
16169548--16169610	22	3.0	21	77	17	69	52	15	4	26	1.63
16169605--16169664	18	3.4	18	74	4	68	51	15	3	30	1.59
16169571--16169670	35	2.9	35	85	4	123	50	14	5	31	1.64
16169757--16169981	24	9.9	24	70	18	108	55	8	3	32	1.47
16169739--16169976	71	3.5	70	84	9	298	55	9	2	32	1.45
16169937--16169994	17	3.2	17	78	9	53	58	5	1	34	1.30
16170048--16170110	21	2.8	23	83	9	76	50	7	6	34	1.57
16170073--16170172	17	5.5	17	78	11	67	49	11	9	31	1.69
16171151--16171292	43	3.4	42	83	4	180	42	16	11	29	1.84
16177352--16177479	62	2.1	62	100	0	256	46	14	9	30	1.76
16177449--16177507	17	3.5	17	70	9	57	49	16	5	28	1.67
16177480--16177533	18	3.1	18	71	13	58	53	14	3	27	1.58
16177432--16177533	34	2.9	35	82	10	136	50	15	4	28	1.64
16177617--16177884	24	11.6	24	73	15	133	54	8	3	33	1.48
16177604--16177842	47	5.1	48	75	14	180	53	10	3	32	1.52
16177578--16177884	47	6.9	44	71	15	132	54	9	3	32	1.51
16177600--16177843	71	3.5	71	86	5	338	54	9	3	32	1.51
16177824--16177871	20	2.3	21	92	3	80	56	10	0	33	1.34
16177641--16177884	47	5.3	46	77	12	193	55	9	2	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16177846--16177884	12	3.2	12	85	7	60	58	5	0	35	1.20
16177908--16177965	16	3.5	17	79	9	57	55	5	6	32	1.49
16177901--16178022	20	6.7	18	74	15	76	53	7	7	31	1.56
16180760--16180821	32	1.9	32	86	0	88	27	20	14	37	1.92
16182416--16182455	18	2.1	19	86	9	55	30	5	2	62	1.29
16182757--16182786	15	1.9	16	93	6	53	10	3	6	80	1.01
16183692--16183737	23	2.0	23	100	0	92	43	13	17	26	1.85
16187050--16187098	6	8.2	6	95	0	89	16	32	32	18	1.93
16189131--16189239	30	3.7	29	75	12	96	21	0	31	46	1.57
16189131--16189239	29	3.7	29	76	13	96	21	0	31	46	1.57
16189132--16189301	29	5.8	29	74	13	93	23	0	29	46	1.57
16189277--16189345	22	3.0	22	81	8	75	27	2	27	42	1.70
16189187--16189312	58	2.2	57	77	11	132	26	0	27	44	1.60
16189331--16189455	7	15.9	8	67	20	68	22	0	30	47	1.52
16189332--16189460	32	4.1	32	84	6	174	21	0	31	47	1.51
16189322--16189457	63	2.1	64	87	5	195	22	0	32	45	1.52
16189331--16189461	16	8.2	16	79	8	142	21	0	30	48	1.51
16189617--16189650	3	11.7	3	93	6	61	29	0	0	70	0.87
16189785--16189837	18	2.9	18	75	10	54	30	5	0	64	1.17
16190039--16190074	17	2.1	18	89	5	56	16	22	36	25	1.94
16190980--16191009	14	2.1	14	100	0	60	33	0	0	66	0.92
16191272--16191370	36	2.7	36	82	6	119	45	9	24	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16191410--16191490	37	2.2	37	81	0	108	45	16	23	14	1.84
16191598--16191684	34	2.6	34	90	0	138	44	13	24	17	1.85
16191652--16192035	174	2.2	171	81	2	455	46	12	19	21	1.83
16193252--16193303	28	1.9	26	84	7	68	11	7	1	78	1.02
16193249--16193303	26	2.0	26	86	13	74	12	7	1	78	1.04
16204715--16204790	29	2.6	29	81	6	82	18	0	32	48	1.48
16204838--16204864	14	1.9	14	100	0	54	25	0	29	44	1.54
16204830--16204909	24	3.6	22	74	17	67	20	3	33	42	1.70
16204879--16205045	16	10.5	16	81	11	157	19	1	31	47	1.57
16204880--16205037	15	9.9	16	82	9	155	20	1	29	48	1.58
16206487--16206531	23	2.0	23	82	8	56	4	8	13	73	1.23
16206536--16206567	15	2.1	15	94	0	55	28	0	0	71	0.86
16206575--16206603	3	9.7	3	100	0	58	34	0	0	65	0.93
16209379--16209430	23	2.5	20	81	12	59	15	0	7	76	0.99
16209384--16209427	22	2.0	21	91	8	70	15	0	6	77	0.97
16209571--16209625	26	2.0	27	86	6	76	29	3	14	52	1.58
16211845--16212196	134	2.6	134	87	6	493	33	6	13	46	1.68
16211847--16212245	134	3.0	133	86	5	486	33	6	14	45	1.70
16212204--16212363	60	2.6	62	76	9	152	40	8	10	41	1.68
16214468--16214525	28	2.0	28	83	10	71	53	0	1	44	1.10
16215089--16215122	16	2.1	16	88	0	50	35	0	2	61	1.11
16218042--16218091	24	2.1	24	96	0	91	18	4	24	54	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16220346--16220388	21	2.0	21	86	0	59	48	23	6	20	1.73
16227993--16228686	348	2.0	348	85	4	927	27	20	28	22	1.99
16239094--16239145	12	4.3	12	90	4	79	50	15	9	25	1.74
16239207--16239262	19	2.9	19	76	15	62	58	8	5	26	1.50
16239165--16239264	38	2.5	40	80	7	116	55	12	6	27	1.59
16239165--16239271	39	2.7	41	79	8	121	54	12	6	27	1.62
16243480--16243528	23	2.2	23	88	3	73	65	8	4	22	1.37
16243523--16243566	22	2.0	22	95	4	81	61	9	4	25	1.45
16243533--16243630	37	2.5	37	74	11	99	52	12	6	29	1.63
16243524--16243630	18	5.5	19	65	19	60	54	11	5	28	1.58
16243791--16243859	5	12.8	5	83	10	50	79	1	4	14	0.95
16243790--16243838	15	3.3	15	84	15	59	83	2	0	14	0.73
16243790--16243862	6	12.2	6	83	12	64	79	1	4	15	0.95
16243791--16243841	11	4.5	11	80	9	50	84	1	0	13	0.71
16243789--16243860	23	3.2	21	78	9	63	80	1	4	13	0.92
16244811--16244844	17	1.9	17	88	5	50	2	14	2	79	0.97
16244851--16244885	17	2.1	16	89	5	52	71	11	2	14	1.25
16248012--16248149	40	3.5	39	78	12	131	19	1	30	48	1.58
16248092--16248146	23	2.3	25	81	15	71	21	0	29	49	1.50
16248005--16248153	8	18.6	8	72	14	85	18	2	30	48	1.59
16250515--16250582	18	3.7	19	76	11	79	48	8	5	36	1.59
16250515--16250599	17	4.8	17	72	16	66	48	9	5	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16250515--16250598	16	4.8	17	74	14	66	47	9	5	36	1.61
16250709--16250780	19	3.7	20	75	7	58	48	9	5	36	1.60
16250835--16251038	32	7.2	31	66	25	128	53	11	5	29	1.59
16250839--16250895	20	2.7	20	79	12	60	52	14	5	28	1.62
16250911--16251007	24	3.7	24	70	19	77	54	10	5	29	1.56
16250835--16251042	56	3.7	56	87	1	294	53	11	5	29	1.59
16250952--16251034	20	4.3	20	66	17	59	53	10	4	31	1.57
16251023--16251057	12	3.0	12	87	4	54	54	14	8	22	1.67
16251659--16251697	12	3.2	12	92	7	62	74	7	0	17	1.05
16251969--16252377	43	9.1	43	71	17	208	38	16	12	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125