genome.fa.s46.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  64  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12807599--12807633	3	11.7	3	93	0	61	28	0	2	68	1.04
12809426--12809632	62	3.3	64	74	9	142	33	14	15	36	1.88
12809411--12810221	263	3.0	260	83	5	939	36	16	11	35	1.86
12811472--12811526	28	2.0	27	86	10	76	58	1	0	40	1.09
12812447--12812497	21	2.6	20	85	11	70	45	3	0	50	1.20
12812808--12812847	20	2.1	19	86	9	55	55	0	0	45	0.99
12812815--12812861	20	2.2	22	85	11	62	44	0	2	53	1.12
12813600--12813649	14	3.5	14	76	15	57	46	2	0	52	1.12
12832375--12832423	10	4.8	10	78	14	55	24	10	18	46	1.79
12832365--12832423	30	2.0	30	90	6	93	23	8	18	49	1.75
12838658--12838770	48	2.3	47	80	8	113	23	9	6	61	1.50
12839060--12839112	23	2.3	23	83	3	63	75	1	3	18	1.05
12840380--12840419	17	2.1	21	82	17	52	40	7	2	50	1.44
12840991--12841032	15	2.6	17	81	7	52	33	9	0	57	1.31
12842067--12842100	16	2.2	15	89	5	50	41	0	0	58	0.98
12842315--12842360	22	2.1	22	100	0	92	63	4	0	32	1.14
12843092--12843141	20	2.4	21	83	3	57	52	2	2	44	1.24
12845848--12846069	85	2.6	84	82	4	259	37	14	20	27	1.91
12846069--12846199	42	3.1	41	75	10	131	32	16	20	30	1.94
12846089--12846209	42	2.9	41	80	4	152	35	13	20	30	1.91
12847015--12847196	72	2.5	72	80	10	201	27	13	18	40	1.88
12847128--12847189	32	1.9	32	83	6	81	29	12	22	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12858276--12858317	20	2.2	19	83	8	50	19	4	11	64	1.44
12858972--12859020	13	4.2	12	76	19	50	32	0	2	65	1.04
12859054--12859099	10	4.7	10	81	5	58	65	0	0	34	0.93
12859056--12859099	20	2.2	20	92	4	72	68	0	0	31	0.90
12863540--12863623	19	4.1	20	76	17	82	76	5	2	15	1.09
12863554--12863608	11	5.3	11	79	18	64	78	5	0	16	0.93
12863550--12863616	11	6.2	11	73	23	54	77	4	1	16	1.00
12864445--12864509	5	13.4	5	80	6	80	56	4	1	36	1.29
12864451--12864509	28	2.1	28	87	0	82	57	5	1	35	1.31
12864528--12864562	3	11.7	3	93	0	61	65	2	0	31	1.07
12867622--12867669	23	2.0	24	84	8	62	39	10	2	47	1.49
12871079--12871490	145	2.8	144	81	5	472	43	10	11	34	1.76
12871993--12872100	37	3.0	36	76	8	101	37	23	15	24	1.93
12871993--12872143	36	4.1	37	76	6	137	39	21	13	25	1.91
12872568--12872608	18	2.3	18	86	0	55	39	9	24	26	1.86
12872778--12872977	82	2.4	81	81	5	213	33	11	19	36	1.87
12872893--12872921	15	1.9	15	100	0	58	41	13	24	20	1.89
12872776--12872977	41	4.9	41	77	5	174	33	11	18	36	1.87
12873204--12874010	34	23.7	34	70	9	342	34	17	17	30	1.93
12873453--12873566	35	3.3	35	66	11	90	31	18	19	30	1.96
12873214--12873660	68	6.6	67	79	5	391	34	17	18	30	1.93
12873588--12873932	136	2.5	136	84	2	417	37	16	16	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12873478--12873807	170	1.9	172	87	4	490	35	17	17	29	1.93
12873485--12874010	136	3.9	136	75	8	408	34	17	17	29	1.93
12874034--12874115	31	2.6	31	75	3	85	28	15	17	39	1.90
12874976--12875015	12	3.2	13	82	10	57	7	12	0	80	0.91
12874972--12875046	27	2.6	28	77	12	82	9	16	0	74	1.06
12877647--12877906	62	4.2	61	68	10	172	39	13	14	32	1.85
12877835--12878132	161	1.8	162	84	3	413	36	15	15	32	1.89
12878053--12878254	62	3.2	62	74	4	217	36	16	13	32	1.89
12884538--12885643	162	6.9	161	77	5	966	32	9	14	43	1.78
12885619--12885663	19	2.4	19	96	0	81	22	8	17	51	1.73
12887961--12887987	8	3.4	8	100	0	54	37	0	37	25	1.57
12887961--12887995	16	2.2	16	89	0	52	42	0	31	25	1.55
12889585--12889654	30	2.3	30	87	0	104	28	14	28	28	1.95
12890661--12890722	3	20.7	3	96	0	115	32	0	1	66	1.02
12893727--12894208	144	3.3	142	83	3	583	40	13	14	32	1.84
12903181--12903224	16	2.8	16	86	6	54	31	4	0	63	1.14
12905544--12905585	15	2.8	15	88	0	66	69	4	2	23	1.20
12906040--12906217	96	1.9	96	80	8	211	34	6	7	51	1.56
12906128--12906328	111	1.8	112	83	5	273	36	6	6	50	1.54
12906708--12906758	25	2.1	24	85	3	66	80	1	9	7	0.98
12908466--12908511	20	2.2	20	84	7	56	54	8	8	28	1.61
12908479--12908565	37	2.3	37	84	2	102	47	8	9	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12908648--12908696	24	2.0	24	88	7	73	46	10	8	34	1.67
12908652--12908709	24	2.4	24	80	8	64	43	13	5	37	1.67
12910745--12910785	7	5.1	8	86	13	50	7	14	0	78	0.96
12915565--12915604	21	2.0	21	90	5	64	45	7	0	47	1.31
12915565--12915619	20	2.8	20	84	13	62	47	5	0	47	1.25
12918722--12918753	2	16.0	2	93	0	55	50	3	0	46	1.17
12923466--12923510	22	2.0	22	86	0	63	33	11	13	42	1.79
12926045--12926102	7	8.4	7	73	3	55	75	1	1	20	0.97
12932356--12932389	15	2.3	15	100	0	68	41	20	5	32	1.76
12933747--12934057	165	1.9	161	83	3	399	11	27	7	53	1.63
12934460--12934868	145	2.8	143	82	4	457	40	12	15	32	1.84
12935345--12935380	18	1.9	19	88	5	56	0	2	13	83	0.76
12935996--12936050	18	3.2	18	76	5	60	7	1	9	81	0.93
12936140--12938496	479	5.0	477	89	4	3403	29	10	18	41	1.83
12936140--12938455	943	2.5	945	90	3	3544	30	10	18	41	1.83
12938170--12938219	23	2.2	23	100	0	100	22	4	24	50	1.66
12938383--12938614	115	2.0	115	88	3	342	28	14	18	38	1.90
12937906--12939089	579	2.0	579	84	5	1542	29	10	18	41	1.84
12938485--12943798	476	11.0	475	77	10	5038	30	10	17	41	1.84
12941559--12941622	29	2.2	29	97	2	121	25	9	20	45	1.80
12945016--12945067	21	2.4	21	84	15	63	42	0	5	51	1.25
12945227--12945256	14	2.1	14	93	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12945245--12945324	23	3.4	23	77	3	79	36	2	2	58	1.25
12945476--12945519	18	2.5	17	85	14	54	36	2	0	61	1.09
12945547--12945593	10	4.7	10	84	7	60	55	0	0	44	0.99
12946154--12946243	16	5.9	16	69	16	66	42	0	3	54	1.17
12946173--12946243	29	2.4	31	86	11	96	38	0	4	57	1.18
12946211--12946264	22	2.7	21	83	13	69	38	1	1	57	1.20
12946981--12947014	17	1.9	18	88	5	52	44	2	0	52	1.16
12947015--12947084	16	4.7	14	76	20	54	48	2	0	48	1.16
12947043--12947083	13	3.1	13	86	13	57	53	0	0	46	1.00
12947115--12947139	12	2.1	12	100	0	50	40	0	8	52	1.31
12947236--12947304	13	5.9	12	76	14	56	43	0	2	53	1.15
12947236--12947304	6	11.8	6	75	17	56	43	0	2	53	1.15
12947273--12947365	28	3.2	28	71	16	73	41	0	5	52	1.24
12948263--12949951	356	4.7	346	75	8	1106	39	8	10	41	1.70
12948301--12949951	179	9.2	180	74	9	1065	39	8	10	41	1.70
12948281--12949855	535	2.9	527	77	7	1423	39	8	10	41	1.70
12949990--12951019	181	5.7	182	78	6	875	40	7	10	41	1.67
12949536--12950448	494	1.9	485	79	7	1027	39	7	10	42	1.67
12950117--12950814	370	1.9	362	82	4	862	41	7	9	41	1.66
12951021--12952123	181	6.1	179	76	5	843	40	7	10	41	1.68
12952962--12953003	20	2.2	20	82	4	50	45	2	0	52	1.13
12953314--12953357	20	2.3	19	84	7	54	34	4	4	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12952802--12953773	176	5.5	176	78	7	772	41	7	10	40	1.68
12952802--12953741	356	2.6	353	77	8	929	41	7	10	40	1.68
12953790--12954353	181	3.1	179	83	5	690	40	7	10	41	1.68
12953480--12954076	303	2.0	299	82	3	734	38	7	11	42	1.68
12953332--12954252	484	1.9	478	80	6	1063	39	7	10	41	1.69
12954928--12955527	181	3.3	180	76	8	429	42	9	8	40	1.66
12955982--12956302	175	1.8	174	88	3	493	44	8	7	39	1.63
12955973--12958379	181	13.3	179	72	11	1174	41	10	8	39	1.70
12955981--12958376	358	6.6	361	71	11	1068	41	10	8	39	1.70
12957389--12958363	539	1.8	541	81	4	1234	40	11	8	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125