genome.fa.s46.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  15  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2441712--2441740	6	5.0	6	95	4	51	51	0	0	48	1.00
2444723--2444770	24	2.0	24	100	0	96	16	20	20	41	1.90
2445347--2445395	12	4.0	12	76	12	55	42	0	48	8	1.32
2451377--2451558	96	1.9	99	85	6	257	41	15	14	28	1.86
2453858--2453885	6	4.7	6	100	0	56	85	0	0	14	0.59
2454900--2454966	23	3.0	21	80	8	71	32	8	22	35	1.85
2464195--2464311	59	2.0	59	87	0	171	35	21	10	32	1.87
2479223--2479267	15	3.0	15	86	0	72	33	6	6	53	1.53
2480035--2480292	142	1.8	140	89	3	401	41	6	9	41	1.64
2480517--2480778	142	1.9	142	83	0	337	41	10	6	41	1.64
2481050--2481092	22	2.0	22	90	0	68	32	2	6	58	1.38
2483577--2483622	2	23.0	2	90	0	74	52	2	0	45	1.13
2493525--2493555	16	1.9	16	93	0	53	41	3	0	54	1.16
2493923--2494230	165	1.9	166	83	3	406	26	8	7	58	1.54
2494640--2494700	23	2.7	23	78	0	77	47	8	14	29	1.73
2506113--2506143	8	3.9	8	95	0	53	54	38	6	0	1.26
2507770--2507805	2	18.0	2	100	0	72	50	0	0	50	1.00
2516407--2516435	2	14.5	2	100	0	58	51	0	0	48	1.00
2516660--2516712	28	2.0	28	82	10	67	52	0	0	47	1.00
2518788--2518962	22	8.0	22	77	3	88	37	5	9	47	1.59
2518786--2518957	44	3.9	43	75	6	123	37	5	9	48	1.58
2518786--2518950	66	2.5	66	81	7	167	36	5	9	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2519112--2519194	22	3.7	22	75	3	85	37	9	6	46	1.61
2519116--2519168	23	2.4	22	83	3	61	39	11	7	41	1.69
2519116--2519201	45	1.9	44	83	2	109	39	9	5	45	1.60
2519445--2519584	22	6.4	21	73	14	97	40	7	7	45	1.61
2519445--2519601	44	3.6	44	78	11	119	40	7	7	45	1.58
2519445--2519584	66	2.1	66	80	10	153	40	7	7	45	1.61
2519480--2519601	22	5.5	22	78	9	115	40	4	8	47	1.52
2519607--2519743	22	6.2	22	75	10	75	40	9	6	43	1.63
2519607--2519743	44	3.1	43	75	8	116	40	9	6	43	1.63
2519636--2519747	22	5.1	22	75	6	84	38	9	8	43	1.67
2520419--2520708	152	1.9	153	86	4	417	45	6	6	41	1.56
2520741--2520784	2	22.0	2	100	0	88	50	0	0	50	1.00
2524142--2524202	32	1.9	32	89	0	95	27	18	19	34	1.95
2535616--2535659	22	2.0	22	90	0	70	34	9	13	43	1.76
2539599--2539642	22	2.0	22	86	0	61	36	9	11	43	1.72
2540004--2540035	16	2.0	16	93	0	55	40	6	15	37	1.73
2542612--2542646	14	2.5	13	86	13	52	82	0	2	14	0.77
2542850--2542882	6	5.5	6	92	0	57	66	18	0	15	1.25
2543423--2543465	13	3.2	13	80	9	50	79	2	0	18	0.85
2543424--2543468	16	2.8	16	83	16	65	77	2	0	20	0.87
2544522--2544560	19	2.1	19	90	0	60	12	12	7	66	1.43
2546279--2546303	5	5.0	5	100	0	50	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2551099--2551153	28	2.0	28	92	0	92	30	20	14	34	1.92
2554577--2554626	21	2.3	23	82	10	68	48	0	0	52	1.00
2557148--2557187	20	2.0	20	85	9	55	27	20	5	47	1.70
2558304--2558363	27	2.3	26	82	8	68	38	10	0	51	1.35
2560405--2560490	29	3.0	29	86	8	122	23	18	12	45	1.84
2571286--2571347	27	2.3	27	97	2	115	43	22	24	9	1.83
2580871--2580914	24	2.0	23	86	13	65	47	0	0	52	1.00
2580773--2580911	78	1.9	78	79	11	168	47	0	1	51	1.09
2583515--2583551	15	2.3	17	86	9	51	72	0	0	27	0.84
2587502--2587538	2	18.5	2	100	0	74	0	0	48	51	1.00
2588820--2588848	2	14.5	2	100	0	58	51	0	0	48	1.00
2588848--2588885	2	19.0	2	89	10	60	50	0	47	2	1.15
2591486--2591527	22	1.9	22	90	0	66	33	11	9	45	1.73
2595440--2595481	22	1.9	22	90	0	66	33	11	9	45	1.73
2597431--2597476	21	2.2	21	88	0	65	2	19	39	39	1.64
2597887--2597954	35	1.9	35	82	5	84	26	10	32	30	1.90
2598341--2598597	126	2.1	124	82	2	309	47	6	6	39	1.55
2599006--2599179	63	2.8	64	84	5	198	45	9	5	39	1.60
2602103--2602151	22	2.3	22	82	6	57	30	4	24	40	1.74
2602619--2602669	21	2.6	19	85	14	68	21	0	27	50	1.48
2603040--2603064	13	1.9	13	100	0	50	24	4	24	48	1.68
2603581--2603628	22	2.2	22	96	3	89	37	8	14	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2605238--2605286	23	2.2	22	88	3	71	77	8	4	10	1.10
2605225--2605264	16	2.4	16	87	8	53	80	7	2	10	1.00
2605228--2605287	23	2.5	24	81	10	70	78	6	3	11	1.06
2605799--2605833	6	5.5	6	90	10	52	80	2	0	17	0.84
2605799--2605833	13	2.8	12	91	8	52	80	2	0	17	0.84
2606519--2606557	7	5.3	7	84	6	51	82	0	2	15	0.79
2606516--2606557	15	2.9	14	86	10	57	80	0	2	16	0.81
2607758--2607797	21	1.9	21	85	10	55	77	7	10	5	1.11
2618801--2619102	48	6.1	49	79	8	272	27	10	19	41	1.85
2618790--2619102	53	6.2	52	76	12	255	28	10	19	41	1.85
2618985--2619218	130	1.8	125	82	9	294	29	10	17	42	1.83
2619599--2619640	8	5.0	8	86	11	57	80	2	2	14	0.90
2619599--2619640	17	2.5	17	92	0	66	80	2	2	14	0.90
2620815--2620859	13	3.4	14	77	20	51	75	0	2	22	0.91
2630079--2630132	2	27.0	2	96	0	99	1	0	48	50	1.11
2645595--2645812	63	3.5	63	74	3	190	38	9	10	41	1.72
2655045--2655069	13	1.9	13	100	0	50	20	32	8	40	1.81
2657141--2657202	31	2.1	29	88	8	90	54	4	4	35	1.43
2673938--2673967	2	15.0	2	100	0	60	50	0	0	50	1.00
2677171--2677204	13	2.5	13	90	9	50	17	0	0	82	0.67
2677171--2677204	17	2.1	16	89	10	52	17	0	0	82	0.67
2677235--2677283	2	24.5	2	100	0	98	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2678104--2678143	21	1.9	21	84	0	53	42	12	5	40	1.64
2678889--2679150	144	1.8	144	81	3	330	30	13	14	41	1.84
2681568--2681609	17	2.4	18	80	15	52	33	0	7	59	1.25
2683021--2683047	4	6.8	4	100	0	54	22	0	0	77	0.76
2686597--2686996	198	2.0	198	90	0	631	30	21	16	32	1.95
2687623--2687668	21	2.2	21	88	7	67	82	4	10	2	0.89
2687622--2687675	22	2.5	21	80	14	65	83	3	9	3	0.89
2687662--2687742	3	27.3	3	83	2	101	65	1	2	30	1.13
2690242--2690362	45	2.6	46	82	3	154	33	8	17	41	1.79
2690650--2690729	34	2.3	34	80	6	90	33	13	13	38	1.85
2690800--2690838	18	2.2	17	86	4	51	35	10	15	38	1.81
2690812--2690851	17	2.4	17	82	0	53	22	12	20	45	1.84
2691495--2691566	28	2.5	28	84	11	83	33	5	11	50	1.61
2692483--2692558	31	2.5	31	86	0	98	40	7	10	40	1.69
2696827--2696883	26	2.1	26	87	9	78	73	7	8	10	1.24
2698613--2698662	26	1.9	26	84	8	66	44	10	6	40	1.63
2700602--2700635	16	2.1	17	88	5	52	47	2	0	50	1.16
2702290--2702355	4	16.5	4	87	0	78	59	0	0	40	0.98
2702288--2702355	6	11.0	6	89	6	73	60	0	0	39	0.97
2703570--2703613	2	22.0	2	100	0	88	50	0	0	50	1.00
2704477--2704527	5	10.2	5	80	16	61	54	0	0	45	0.99
2704476--2704525	11	4.7	11	87	7	77	54	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2705279--2705417	22	6.4	21	74	16	81	41	7	5	46	1.53
2705381--2705439	22	2.7	22	81	7	66	45	10	0	44	1.37
2705517--2705618	22	4.6	22	80	4	98	43	7	1	47	1.43
2705579--2705630	22	2.4	22	83	6	70	46	13	3	36	1.62
2706320--2706368	10	4.7	10	80	9	53	48	8	2	40	1.44
2706440--2706492	21	2.6	20	88	5	79	41	11	7	39	1.69
2706603--2706721	47	2.5	48	84	1	168	52	8	5	34	1.54
2706688--2706752	20	3.2	20	82	8	78	56	6	4	32	1.44
2709002--2709752	41	18.1	41	79	5	571	46	17	12	23	1.82
2709003--2709253	88	2.9	86	79	10	280	49	19	10	20	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125