genome.fa.s46.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  72  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14296331--14296370	21	1.9	21	94	0	71	50	12	7	30	1.68
14296422--14296452	16	1.9	16	100	0	62	77	3	6	12	1.08
14306856--14306925	35	2.0	35	88	0	104	34	25	11	28	1.91
14307650--14307686	19	2.1	19	85	10	51	8	10	13	67	1.41
14318047--14318083	5	7.6	5	87	6	58	0	2	18	78	0.87
14319821--14319891	37	1.9	37	83	11	92	30	18	18	32	1.95
14327568--14327839	136	2.0	136	85	2	368	42	6	19	30	1.78
14329113--14329144	16	2.0	16	100	0	64	31	6	18	43	1.75
14331291--14331364	27	2.7	27	77	6	78	39	20	5	35	1.75
14333650--14333710	32	1.9	32	86	0	86	59	6	8	26	1.51
14333698--14333746	16	2.9	17	78	9	55	51	6	8	34	1.57
14344921--14344971	21	2.3	21	80	6	57	50	0	1	47	1.12
14344930--14344973	15	3.1	14	78	9	54	47	0	2	50	1.13
14347111--14347139	15	2.0	15	93	6	51	65	0	13	20	1.26
14348328--14348385	20	3.0	20	89	2	82	15	5	24	55	1.61
14348454--14348496	13	3.3	13	78	12	52	18	2	32	46	1.62
14348449--14348504	26	2.2	26	83	0	67	17	3	30	48	1.65
14348500--14348566	21	3.2	20	81	6	71	22	2	34	40	1.69
14360795--14360836	16	2.6	16	88	3	57	76	2	19	2	1.01
14363659--14363707	14	3.6	14	80	5	55	28	8	30	32	1.86
14363682--14363771	13	6.8	13	75	9	65	27	2	32	37	1.69
14363805--14363836	13	2.5	13	94	0	55	28	0	34	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14363879--14363915	14	2.5	15	83	16	51	27	0	24	48	1.51
14363851--14363930	35	2.3	35	79	12	85	23	0	30	46	1.53
14372018--14372567	157	3.5	157	79	6	560	30	6	21	41	1.79
14373228--14373496	143	1.9	141	81	6	328	30	9	15	44	1.78
14375208--14375248	13	3.2	13	82	3	57	53	29	0	17	1.44
14375334--14375391	19	2.9	20	84	5	73	39	36	5	18	1.74
14383575--14383634	31	1.9	31	93	0	102	38	8	25	28	1.84
14383801--14383831	13	2.5	12	90	10	53	90	0	9	0	0.46
14385257--14385301	15	2.9	16	83	6	65	77	15	0	6	0.96
14385396--14385578	47	3.9	47	78	7	201	26	13	15	44	1.83
14385408--14385739	93	3.7	92	76	14	325	27	12	15	44	1.83
14385458--14385706	130	1.9	128	81	4	295	27	12	15	44	1.82
14385585--14385844	46	5.7	47	72	11	179	26	11	16	45	1.80
14386168--14386211	20	2.2	20	83	0	52	52	13	9	25	1.70
14387318--14387359	11	3.8	11	78	12	50	19	19	4	57	1.58
14387322--14387364	22	2.0	22	86	9	61	18	16	6	58	1.60
14388801--14388854	27	1.9	29	85	14	78	29	18	7	44	1.77
14389150--14389188	17	2.3	17	86	0	51	84	0	5	10	0.76
14389152--14389181	15	1.9	16	93	6	53	86	0	3	10	0.67
14389782--14389828	8	5.9	8	80	9	51	80	0	14	4	0.85
14398287--14398477	84	2.3	84	98	0	364	36	7	20	34	1.82
14400758--14400930	94	1.9	92	84	4	231	31	12	13	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14400739--14401073	142	2.4	140	82	7	405	30	13	12	43	1.81
14400893--14401075	93	2.0	94	83	5	237	28	12	12	45	1.79
14400738--14401070	46	7.1	47	78	5	309	30	13	12	43	1.81
14401842--14402102	144	1.8	143	80	5	312	30	11	17	40	1.86
14403768--14403838	7	10.4	7	72	6	56	49	33	0	16	1.47
14403782--14403831	20	2.5	20	96	0	91	52	28	0	20	1.47
14403822--14403865	21	2.1	21	86	0	61	54	25	2	18	1.55
14403775--14403871	20	4.5	20	73	19	79	51	29	1	17	1.52
14403940--14403999	7	8.6	7	85	7	59	48	33	0	18	1.48
14404484--14404528	17	2.6	17	85	0	63	77	0	17	4	0.92
14406382--14406418	18	2.2	16	90	9	56	24	0	10	64	1.25
14406669--14406727	17	3.5	17	84	9	75	28	6	8	55	1.55
14408625--14408670	23	2.0	23	83	8	58	58	6	8	26	1.52
14411366--14411413	16	2.9	17	75	9	55	64	8	14	12	1.49
14417516--14417548	17	2.0	16	94	5	57	30	0	0	69	0.88
14418503--14418553	27	1.9	26	84	11	68	7	9	7	74	1.22
14435180--14435217	20	1.9	20	88	0	58	23	10	13	52	1.71
14435124--14435295	91	1.9	91	87	2	256	26	9	15	48	1.76
14441332--14441433	33	3.1	33	73	10	91	44	10	20	24	1.83
14441332--14441435	34	3.1	33	75	6	93	44	10	20	25	1.83
14441567--14441656	28	3.2	28	81	6	101	46	12	16	24	1.81
14444050--14444090	17	2.4	17	83	0	55	14	9	39	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14445252--14445343	34	2.8	32	78	12	91	25	6	8	59	1.51
14445369--14445452	32	2.7	32	74	9	82	26	11	7	54	1.62
14449201--14449322	60	2.0	60	93	0	208	28	13	33	24	1.93
14451373--14451434	18	3.6	17	71	8	54	27	4	6	61	1.41
14451403--14451560	49	3.3	47	74	18	144	25	13	7	53	1.66
14451375--14451573	32	6.2	30	72	15	114	26	11	7	54	1.63
14452364--14452410	17	2.7	18	83	12	62	12	10	8	68	1.40
14457613--14457652	12	3.3	12	85	0	53	55	42	2	0	1.13
14466548--14466587	19	2.0	20	85	9	55	22	12	42	22	1.87
14468317--14468346	3	10.0	3	100	0	60	66	0	0	33	0.92
14468564--14468671	19	5.8	19	69	12	62	48	19	12	19	1.81
14473603--14473631	8	3.6	8	100	0	58	79	10	10	0	0.94
14474853--14474908	14	4.0	14	76	19	55	69	1	28	0	0.98
14474813--14474909	18	5.7	17	68	18	51	69	2	23	5	1.20
14474845--14474910	21	3.4	19	78	15	64	71	1	25	1	1.04
14475301--14475375	32	2.4	32	91	6	118	37	21	18	22	1.94
14475638--14476053	33	12.9	31	71	12	197	37	18	15	28	1.91
14475606--14475785	99	1.8	100	87	1	272	35	17	14	32	1.90
14475643--14475941	65	4.6	63	76	10	201	36	19	15	29	1.92
14475638--14476174	32	16.9	31	68	13	204	36	18	15	29	1.92
14475964--14476042	31	2.5	30	82	13	88	40	21	15	22	1.90
14476821--14476930	13	7.7	15	72	18	51	66	0	0	32	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14484364--14484408	17	2.7	15	81	18	54	75	2	2	20	1.01
14484431--14484507	23	3.3	23	100	0	154	59	0	0	40	0.97
14484648--14484699	20	2.7	20	78	3	70	42	17	19	21	1.89
14493195--14493319	62	2.0	62	96	0	232	33	11	20	34	1.88
14493411--14493461	25	2.1	24	81	3	57	9	13	5	70	1.32
14493427--14493461	17	2.1	17	89	5	54	11	5	8	74	1.22
14501518--14501558	21	2.0	21	95	0	73	29	14	26	29	1.95
14502451--14502504	21	2.8	19	74	15	58	22	1	3	72	1.10
14504757--14504806	25	2.0	26	84	4	66	12	4	12	72	1.26
14504863--14505250	57	6.6	57	81	10	462	44	7	12	35	1.70
14504841--14505250	60	6.9	57	82	11	472	45	7	11	34	1.69
14504853--14505250	117	3.4	116	88	6	563	44	7	12	35	1.70
14518570--14518604	18	2.0	17	88	5	52	22	25	11	40	1.88
14520561--14520591	15	2.0	16	93	6	55	41	0	12	45	1.42
14523009--14523064	28	2.0	28	89	3	87	46	7	8	37	1.63
14526804--14526845	22	2.0	21	85	4	57	57	9	9	23	1.60
14553251--14553415	61	2.7	61	85	2	233	41	13	15	30	1.85
14553875--14553926	18	2.5	20	80	20	63	67	0	1	30	1.02
14553875--14553930	23	2.7	21	78	15	64	67	0	1	30	1.01
14555273--14555327	21	2.4	23	85	14	71	69	0	3	27	1.05
14555240--14555335	21	4.8	20	69	18	65	66	2	5	26	1.23
14555680--14555755	33	2.3	33	80	17	88	65	3	1	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14563573--14563634	18	3.6	18	80	10	60	79	3	16	1	0.95
14565414--14565479	23	2.9	23	77	8	62	39	24	12	24	1.89
14565335--14565561	123	1.8	124	84	2	314	34	22	16	26	1.95
14565335--14565595	123	2.1	124	82	3	312	34	22	16	26	1.95
14565553--14565603	22	2.2	23	89	6	77	29	21	19	29	1.98
14566854--14566888	12	2.9	12	91	0	52	62	20	2	14	1.43
14566907--14566993	31	2.9	29	81	13	97	60	18	8	12	1.55
14566912--14567008	31	3.2	30	73	15	83	64	16	7	11	1.46
14566942--14567008	31	2.1	31	86	8	91	65	16	5	11	1.44
14567531--14567567	10	3.6	10	88	3	56	32	32	10	24	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125