genome.fa.s46.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  71  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14116099--14116171	37	2.0	35	86	5	101	38	12	13	35	1.83
14118981--14119513	223	2.4	223	95	0	958	41	9	11	37	1.74
14122205--14122248	23	1.9	23	81	9	54	15	4	2	77	1.04
14122499--14122544	13	3.5	13	93	0	74	21	6	26	45	1.76
14122499--14122555	13	4.3	12	84	10	60	24	7	21	47	1.75
14122736--14122772	3	12.3	3	100	0	74	32	0	0	67	0.91
14123517--14123553	2	18.5	2	94	0	56	48	5	0	45	1.25
14124672--14124725	17	3.1	18	75	20	60	38	0	0	61	0.96
14125641--14125675	18	1.9	18	94	0	61	54	20	2	22	1.58
14130064--14130093	15	2.0	15	93	0	51	36	13	3	46	1.60
14130414--14130455	20	2.0	21	90	4	68	42	7	7	42	1.59
14130414--14130476	21	3.0	21	86	2	74	38	9	9	42	1.70
14141230--14141518	127	2.3	127	80	10	340	34	11	11	42	1.77
14141614--14141650	15	2.5	15	91	4	58	59	0	2	37	1.12
14145063--14145139	3	26.0	3	94	2	138	67	1	0	31	0.99
14148309--14148344	17	2.3	17	86	13	51	50	0	30	19	1.48
14153153--14153695	60	9.1	59	79	8	447	47	5	11	35	1.63
14153548--14153583	19	1.9	19	88	5	56	36	8	8	47	1.64
14153160--14153695	118	4.5	120	82	6	576	47	5	11	36	1.63
14154230--14154829	298	2.0	297	93	0	1022	30	16	16	35	1.92
14158830--14158884	20	2.8	20	97	0	101	36	20	14	29	1.92
14159216--14159380	17	9.9	16	68	10	71	29	15	12	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14159301--14159346	17	2.8	16	90	6	74	28	17	8	45	1.78
14159257--14159380	50	2.5	51	78	1	133	27	16	13	41	1.86
14159563--14160227	172	3.9	172	80	4	655	23	18	15	43	1.87
14159558--14160160	258	2.3	258	82	3	721	22	18	15	43	1.88
14159559--14160178	86	7.2	86	80	3	584	22	18	15	43	1.87
14161594--14161633	21	2.0	20	85	5	53	22	5	2	70	1.19
14161833--14161869	16	2.3	16	90	9	58	43	0	0	56	0.99
14161736--14162241	120	4.2	119	82	7	542	47	5	11	35	1.62
14162116--14162151	19	1.9	19	88	5	56	36	8	8	47	1.64
14161721--14162245	59	8.8	59	79	7	524	47	5	11	35	1.62
14162948--14163004	28	2.0	28	86	0	78	26	1	19	52	1.55
14164508--14164600	34	2.7	33	77	6	89	37	8	10	43	1.70
14164086--14165411	670	2.0	673	90	2	2132	40	10	8	39	1.71
14167828--14167876	3	16.3	3	100	0	98	32	0	0	67	0.91
14167890--14167941	25	2.0	26	82	10	63	65	1	0	32	1.04
14177114--14177397	150	1.9	148	88	4	428	50	9	19	20	1.74
14177118--14177445	150	2.2	148	84	5	412	51	9	18	20	1.74
14177544--14177582	14	2.8	14	84	0	51	84	7	5	2	0.84
14181465--14181514	21	2.5	20	93	6	91	48	0	0	52	1.00
14181487--14181543	30	1.9	30	85	0	78	52	1	0	45	1.11
14181870--14181928	15	4.0	16	72	20	65	37	3	10	49	1.54
14181874--14181927	27	2.0	28	96	3	101	35	3	9	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14192903--14192955	20	2.8	18	83	8	61	60	11	18	9	1.57
14194016--14194044	3	9.7	3	100	0	58	65	0	0	34	0.93
14194131--14194156	3	8.7	3	100	0	52	69	0	0	30	0.89
14199563--14199596	14	2.3	15	90	5	52	67	2	20	8	1.31
14212209--14212241	3	11.0	3	100	0	66	66	0	0	33	0.92
14212329--14212354	3	8.7	3	100	0	52	69	0	0	30	0.89
14217761--14217795	15	2.3	16	90	9	56	68	2	20	8	1.29
14233132--14233169	20	1.9	20	100	0	76	42	7	26	23	1.81
14237008--14237041	17	2.0	17	88	11	52	67	17	8	5	1.37
14238955--14239003	22	2.2	22	85	7	64	59	12	8	20	1.58
14238974--14239017	22	2.0	22	81	4	52	61	18	2	18	1.45
14244964--14244988	10	2.5	10	100	0	50	0	16	0	84	0.63
14245017--14245059	18	2.4	18	80	7	52	6	18	0	74	1.04
14250387--14250446	27	2.2	27	84	0	75	43	15	21	20	1.88
14253609--14253639	2	15.5	2	100	0	62	48	0	0	51	1.00
14254112--14254155	8	5.2	9	84	15	51	75	0	2	22	0.92
14254272--14254354	13	6.4	13	79	5	87	54	16	7	21	1.66
14257487--14257528	20	2.1	20	82	8	50	19	2	14	64	1.39
14257868--14257897	14	2.1	14	93	0	51	60	6	16	16	1.56
14259354--14259426	20	3.5	20	77	7	65	76	1	15	6	1.05
14260670--14260725	11	5.2	11	77	14	55	71	1	26	0	0.96
14260669--14260734	33	2.0	33	88	5	98	71	1	25	1	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14261615--14261718	32	3.4	32	71	15	101	34	22	14	28	1.93
14261817--14261912	22	4.1	22	70	22	61	34	22	20	21	1.97
14261866--14261912	22	2.1	22	88	7	69	40	23	14	21	1.90
14264711--14264821	34	3.2	34	73	18	95	35	16	13	35	1.88
14265113--14265196	8	9.8	9	78	11	70	79	7	2	10	1.01
14265113--14265211	8	11.9	8	75	8	65	79	8	2	10	1.00
14265159--14265212	22	2.4	22	81	6	54	83	7	3	5	0.91
14265110--14265197	9	9.1	9	71	18	61	79	6	2	11	1.01
14265555--14265642	27	3.2	26	73	12	77	64	3	1	30	1.17
14265559--14265603	8	5.4	8	84	10	63	71	2	0	26	0.98
14268925--14270073	576	2.0	571	93	1	1958	41	12	10	35	1.78
14272277--14272322	13	3.5	13	80	11	58	47	23	4	23	1.69
14272328--14272463	13	10.3	13	68	3	74	47	22	5	25	1.71
14272328--14272449	27	4.6	27	74	5	88	47	21	5	25	1.72
14272328--14272460	40	3.4	38	71	7	104	48	22	5	24	1.71
14276476--14276512	3	12.3	3	100	0	74	64	0	0	35	0.94
14279296--14279386	6	14.3	6	72	21	62	74	1	19	4	1.05
14279285--14279367	43	2.0	43	88	7	125	69	2	20	7	1.23
14279296--14279374	13	5.8	13	75	16	63	73	1	20	5	1.09
14279314--14279386	7	10.3	7	71	19	53	76	1	17	4	1.01
14279838--14280029	97	2.0	97	90	2	305	43	13	14	28	1.84
14282604--14282661	18	3.5	17	72	18	59	55	6	8	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14282606--14282681	32	2.4	32	84	4	91	56	6	9	27	1.55
14283216--14283334	42	2.9	42	84	3	143	47	7	26	18	1.75
14287494--14287559	23	2.9	23	81	0	69	56	21	7	15	1.64
14287518--14287711	75	2.5	77	82	1	221	55	20	6	17	1.64
14287518--14287711	77	2.6	75	82	3	246	55	20	6	17	1.64
14287669--14287719	23	2.2	23	89	0	75	64	19	5	9	1.44
14288584--14288765	101	1.8	101	83	9	246	38	13	17	30	1.88
14288881--14289189	33	9.2	33	72	15	217	40	13	15	30	1.87
14288975--14289134	35	4.7	34	75	17	161	41	13	14	30	1.84
14288918--14289165	101	2.5	101	98	0	478	39	14	16	29	1.88
14288914--14289188	134	2.0	133	79	11	294	40	14	16	29	1.88
14288914--14289189	68	4.1	65	74	16	192	40	14	15	29	1.87
14289387--14289483	35	2.8	36	78	6	101	17	18	12	51	1.76
14289574--14290902	36	37.6	35	68	14	259	15	15	15	53	1.73
14289332--14290980	36	46.6	35	67	12	217	15	15	15	53	1.74
14289637--14289905	73	3.8	69	73	15	158	17	14	13	54	1.71
14289945--14290009	33	2.0	33	84	0	85	18	15	15	50	1.78
14290242--14290511	107	2.5	107	79	9	277	15	18	13	52	1.75
14290556--14290734	37	4.9	36	72	11	114	14	12	16	56	1.67
14290532--14290779	109	2.3	109	97	0	460	15	14	15	54	1.71
14290532--14290809	109	2.6	109	92	2	425	15	14	15	55	1.71
14290741--14290948	71	2.9	71	80	7	217	12	15	17	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14290815--14291055	35	6.8	36	73	13	162	12	14	18	54	1.70
14290818--14291267	36	12.7	36	68	12	155	14	16	16	53	1.74
14291719--14291818	13	7.8	12	72	12	67	79	15	2	4	0.98
14291726--14291818	44	2.2	42	78	15	104	78	16	2	3	0.98
14291727--14291811	21	4.2	19	80	12	75	77	17	2	2	0.98
14291729--14291811	29	3.0	26	80	18	96	77	18	2	2	0.99
14291726--14291799	8	9.2	8	77	10	53	78	16	2	2	0.98
14294118--14294150	12	2.6	13	85	9	50	45	27	3	24	1.68
14294181--14294291	40	2.8	39	84	4	143	48	21	6	23	1.73
14294173--14294320	13	10.9	13	70	9	64	46	26	5	21	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125