genome.fa.s46.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  54  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10825337--10825409	29	2.4	30	82	8	78	50	0	2	46	1.15
10825478--10825545	28	2.4	29	75	20	72	52	0	2	44	1.16
10839670--10839735	18	3.7	17	76	8	60	4	34	28	31	1.78
10841331--10841365	17	2.0	18	88	5	54	54	0	2	42	1.15
10841686--10841715	14	2.1	14	93	0	51	10	0	6	83	0.81
10842840--10842872	11	3.1	11	86	8	50	33	0	0	66	0.92
10842834--10842875	19	2.2	20	83	12	61	33	0	0	66	0.92
10842844--10842878	9	3.9	9	89	10	54	34	0	0	65	0.93
10842867--10842919	22	2.4	22	93	6	90	49	0	0	50	1.00
10846542--10846607	35	1.9	34	82	11	82	24	4	4	66	1.29
10847892--10848062	87	2.0	86	95	1	306	32	11	8	47	1.69
10847894--10848026	43	3.1	42	64	18	101	32	9	9	49	1.65
10847910--10848044	43	3.1	43	63	20	100	33	10	7	48	1.65
10848337--10848376	7	5.9	7	85	5	55	12	2	2	82	0.87
10848337--10848376	13	3.0	13	89	10	55	12	2	2	82	0.87
10848375--10848404	16	1.9	16	93	6	53	76	3	0	20	0.92
10850146--10850240	9	10.8	9	75	12	74	67	1	3	28	1.13
10850399--10850477	37	2.1	38	83	4	97	67	5	6	21	1.33
10850537--10850626	30	2.8	31	81	14	87	61	11	0	27	1.30
10850581--10850658	39	2.0	39	82	2	95	58	12	1	26	1.42
10850853--10850899	15	3.0	16	76	14	53	68	4	6	21	1.30
10851040--10851095	19	3.1	18	82	10	69	25	0	7	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10851043--10851129	17	4.7	18	74	13	61	24	0	8	67	1.17
10851091--10851138	17	2.8	17	83	0	51	25	0	6	68	1.12
10851117--10851163	8	5.6	8	79	18	51	21	4	0	74	0.99
10851107--10851163	26	2.2	26	81	6	71	26	3	0	70	1.03
10851115--10851172	17	3.4	18	77	17	61	18	6	0	74	1.04
10851117--10851163	9	5.5	8	79	20	51	21	4	0	74	0.99
10851115--10851172	26	2.3	25	87	3	80	18	6	0	74	1.04
10852488--10852515	2	14.0	2	100	0	56	50	0	0	50	1.00
10857251--10857290	21	1.9	21	90	10	64	50	2	2	45	1.28
10857592--10857616	2	12.5	2	100	0	50	48	0	0	52	1.00
10858052--10858324	122	2.3	120	89	5	419	20	7	23	49	1.74
10861253--10861325	30	2.4	30	84	6	85	20	1	30	47	1.58
10861301--10861352	14	3.7	14	68	0	50	13	0	30	55	1.38
10861394--10861464	30	2.3	30	83	7	81	19	2	29	47	1.64
10861424--10861489	15	4.4	15	71	9	55	24	3	25	46	1.66
10861451--10861507	29	2.0	29	85	0	78	26	1	24	47	1.62
10861941--10861988	19	2.8	16	74	17	51	72	0	0	27	0.84
10863458--10863554	37	2.6	37	81	3	115	44	21	22	11	1.84
10863552--10863643	22	4.2	22	82	0	103	33	13	22	30	1.92
10863554--10863637	44	1.9	44	90	0	132	29	14	23	32	1.94
10863659--10863698	21	1.9	21	94	0	71	47	0	12	40	1.41
10868313--10868373	20	3.3	20	69	21	69	50	18	14	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10868313--10868383	35	2.0	35	97	0	133	50	19	12	16	1.77
10868326--10868383	19	3.2	19	65	22	52	50	24	12	13	1.76
10878115--10878156	15	2.7	16	81	7	50	11	4	4	78	1.06
10882512--10882541	14	2.1	14	93	0	51	10	30	6	53	1.60
10883285--10883333	23	2.1	23	92	0	80	48	8	12	30	1.69
10884101--10884665	303	1.9	303	91	1	925	23	11	14	49	1.76
10889205--10889275	32	2.2	32	85	2	99	33	26	7	32	1.83
10890893--10890945	15	3.3	16	81	7	63	5	16	5	71	1.25
10892303--10892360	27	2.1	27	83	0	71	32	1	8	56	1.40
10892313--10892363	27	1.9	27	96	4	95	29	0	9	60	1.28
10892449--10892488	19	2.1	19	86	9	55	80	0	5	15	0.88
10893328--10893428	3	31.7	3	72	18	71	58	2	2	35	1.28
10893351--10893462	7	15.9	7	74	17	90	54	2	4	38	1.35
10893351--10893470	20	5.7	20	73	17	100	54	3	4	38	1.36
10893321--10893465	44	3.4	44	86	9	192	56	3	4	35	1.35
10893404--10893494	37	2.4	38	82	8	107	53	4	5	36	1.44
10893786--10893950	83	2.0	83	80	2	188	33	16	27	22	1.95
10893867--10894074	114	1.8	114	80	4	249	35	13	26	24	1.93
10901937--10902028	47	2.0	47	95	0	166	53	16	2	28	1.55
10905540--10905579	18	2.2	18	86	4	53	80	5	2	12	0.98
10906431--10906583	3	49.3	3	71	20	102	57	2	2	37	1.26
10906457--10906580	7	17.3	7	79	18	116	57	1	2	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10913238--10913285	20	2.4	18	75	18	51	31	0	12	56	1.37
10922554--10922593	19	2.0	20	85	4	55	62	7	0	30	1.23
10922580--10922633	10	5.5	10	78	12	58	50	9	1	38	1.45
10922567--10922632	29	2.3	29	89	5	98	51	9	1	37	1.43
10922645--10922687	19	2.1	21	83	8	54	60	0	2	37	1.10
10922889--10922962	27	2.7	28	85	2	105	60	4	1	33	1.24
10922889--10922961	9	8.0	9	69	11	51	60	4	1	34	1.24
10922972--10923041	28	2.5	29	77	13	74	61	8	0	30	1.26
10923221--10923253	9	3.7	9	88	11	50	18	3	9	69	1.28
10923338--10923396	31	1.9	31	86	10	86	45	1	6	45	1.40
10923843--10923886	22	2.0	23	86	4	63	45	4	0	50	1.22
10925775--10925831	21	2.9	20	85	15	75	70	0	29	0	0.88
10928522--10928665	37	3.9	37	74	9	105	36	18	10	34	1.85
10928566--10928671	36	2.9	37	77	7	108	38	17	10	33	1.84
10935725--10935830	43	2.4	44	84	1	133	29	17	14	38	1.89
10935966--10936104	44	3.2	44	83	7	167	26	11	17	43	1.83
10936256--10936357	43	2.4	43	88	3	143	27	9	17	45	1.80
10936580--10936647	21	3.3	21	76	13	70	75	5	8	10	1.20
10937892--10937946	21	2.7	21	80	8	60	70	0	27	1	0.97
10937893--10937947	15	3.7	15	80	7	60	69	0	29	1	0.99
10940270--10940422	63	2.4	63	79	2	164	48	10	5	35	1.60
10940321--10940574	63	3.9	62	73	13	222	44	7	7	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10940711--10940746	16	2.2	16	90	0	54	72	5	2	19	1.17
10945245--10945273	2	14.5	2	100	0	58	51	0	0	48	1.00
10945499--10945529	2	15.5	2	100	0	62	51	48	0	0	1.00
10946177--10946214	16	2.4	16	100	0	76	50	31	0	18	1.47
10949750--10949778	13	2.1	14	93	6	51	41	3	0	55	1.17
10951696--10951722	13	2.1	13	100	0	54	85	7	0	7	0.75
10951681--10951715	17	2.0	18	88	5	54	77	14	2	5	1.07
10951681--10951721	18	2.3	18	86	0	55	78	12	2	7	1.06
10952594--10952655	27	2.2	27	81	16	65	50	6	1	41	1.38
10963818--10963852	13	2.5	14	90	9	54	85	0	14	0	0.59
10963818--10963852	16	2.2	16	90	10	54	85	0	14	0	0.59
10964648--10964979	49	6.7	53	81	7	223	28	10	22	38	1.87
10964703--10964979	49	5.8	48	83	5	319	28	11	22	37	1.89
10964701--10964979	145	1.9	145	87	4	411	27	11	22	37	1.89
10965190--10965232	3	14.3	3	85	0	59	58	0	0	41	0.98
10965190--10965235	12	3.8	12	85	2	65	58	0	0	41	0.98
10966225--10966290	3	21.7	3	86	9	89	30	0	1	68	0.99
10966974--10967018	21	2.1	22	84	12	58	44	6	2	46	1.42
10969540--10969594	26	2.1	27	86	10	78	54	18	3	23	1.59
10972870--10972932	31	2.0	31	84	0	81	55	1	12	30	1.47
10974269--10974298	12	2.5	12	94	0	51	16	3	6	73	1.18
10974303--10974341	3	13.7	3	84	10	55	30	0	2	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10974311--10974359	22	2.2	21	79	10	53	32	2	2	63	1.17
10974417--10974454	20	2.0	20	89	5	60	68	0	0	31	0.90
10975178--10975210	3	11.0	3	100	0	66	66	0	0	33	0.92
10993050--10993099	26	1.9	26	87	0	73	62	8	4	26	1.41
10994297--10994355	22	2.8	21	77	10	66	16	1	30	50	1.55
10994388--10994538	29	5.2	29	71	15	89	20	1	33	44	1.63
10994386--10994543	59	2.7	59	77	6	169	22	1	32	42	1.65
10994436--10994521	30	2.9	29	77	1	91	20	2	32	44	1.65
10994609--10994737	29	4.4	29	75	8	102	22	2	27	47	1.64
10994743--10994780	14	2.7	14	91	0	58	26	0	21	52	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125