genome.fa.s46.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  104  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20586759--20586811	26	2.0	26	85	7	72	28	22	20	28	1.99
20587519--20587912	159	2.5	158	77	7	411	20	25	30	22	1.98
20587994--20588044	26	2.0	26	92	7	86	27	21	19	31	1.97
20588530--20588581	25	2.0	26	89	10	81	26	25	19	28	1.98
20589262--20589314	26	2.0	26	89	7	81	30	28	16	24	1.97
20589606--20589658	26	2.0	26	89	7	81	28	24	18	28	1.98
20589814--20589866	26	2.0	26	92	0	88	26	26	20	26	1.99
20589840--20590332	158	3.1	159	77	5	525	19	27	30	22	1.98
20590315--20590384	26	2.7	26	95	0	131	25	25	20	28	1.99
20590157--20590552	210	1.9	210	87	3	582	20	26	28	24	1.99
20590683--20590735	26	2.0	26	89	7	81	24	20	22	32	1.98
20591138--20591194	26	2.2	26	83	0	69	63	10	5	21	1.46
20596123--20596175	26	2.0	26	85	7	72	24	22	20	32	1.98
20596345--20596725	158	2.4	158	77	6	412	22	28	29	20	1.98
20596345--20596845	158	3.2	158	75	7	390	21	27	28	21	1.99
20596819--20596897	26	3.0	26	94	0	140	25	21	21	31	1.98
20597922--20597972	26	2.0	26	92	0	84	25	27	19	27	1.99
20597948--20598316	159	2.3	157	76	8	372	18	26	32	22	1.97
20597935--20598690	399	1.9	400	86	2	1081	20	26	30	23	1.98
20598664--20598716	26	2.0	26	89	7	81	26	18	18	35	1.95
20600027--20600059	11	3.0	11	100	0	66	18	27	36	18	1.94
20600626--20600678	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20602041--20602093	26	2.0	26	96	0	97	26	28	20	24	1.99
20602067--20602398	156	2.1	157	80	2	380	23	27	25	23	2.00
20602578--20602630	26	2.0	26	89	7	81	28	24	18	28	1.98
20602700--20602726	11	2.5	11	100	0	54	18	29	33	18	1.95
20615116--20615168	26	2.0	26	85	0	70	28	28	20	22	1.99
20615352--20615644	159	1.8	159	80	2	347	20	27	27	24	1.99
20615546--20616224	368	1.9	355	81	5	824	19	28	30	22	1.98
20616209--20616503	159	1.9	159	79	2	342	20	25	30	23	1.99
20616488--20616540	26	2.0	26	89	7	81	28	24	18	28	1.98
20617211--20617260	25	2.0	26	84	4	66	30	30	16	24	1.96
20617394--20617446	26	2.0	26	89	7	81	28	24	18	28	1.98
20617800--20618300	159	3.2	158	73	6	451	20	26	28	23	1.99
20618274--20618325	26	2.0	26	85	10	72	32	23	17	26	1.96
20619007--20619059	26	2.0	26	92	0	88	26	26	20	26	1.99
20619191--20619243	26	2.0	26	86	13	74	30	24	16	28	1.97
20619913--20619965	26	2.0	26	88	0	79	28	26	18	26	1.98
20618116--20620124	906	2.2	913	86	4	2827	25	24	23	26	2.00
20619939--20620441	159	3.2	158	80	5	532	19	27	29	23	1.98
20620415--20620467	26	2.0	26	89	7	81	24	24	20	30	1.99
20621141--20621191	26	2.0	26	96	0	93	31	27	15	25	1.96
20622374--20622426	26	2.0	26	89	7	81	26	22	20	30	1.98
20622987--20623042	26	2.2	26	96	0	103	28	26	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20623333--20623385	26	2.0	26	85	7	72	32	22	15	30	1.94
20624255--20624558	158	1.9	158	80	5	355	18	25	30	25	1.98
20624728--20624780	26	2.0	26	88	0	79	28	26	18	26	1.98
20625070--20625122	26	2.0	26	85	7	72	28	22	18	30	1.98
20625789--20625896	26	4.2	26	95	0	180	30	28	16	24	1.96
20625867--20626358	159	3.1	153	74	12	462	20	28	29	22	1.98
20626338--20626419	26	3.2	26	85	3	112	26	23	19	30	1.98
20627644--20628302	158	4.2	159	76	8	592	20	26	28	24	1.99
20628276--20628328	26	2.0	26	89	7	81	28	24	18	28	1.98
20628469--20628519	26	2.0	26	92	0	84	21	27	23	27	1.99
20628192--20628905	196	3.7	191	77	9	679	22	26	27	23	2.00
20628548--20628905	194	1.8	196	84	4	492	22	26	27	23	1.99
20628118--20629054	378	2.5	379	82	2	1044	22	25	28	23	1.99
20629728--20630135	159	2.6	158	79	9	429	22	25	30	22	1.99
20630399--20630451	26	2.0	26	92	7	90	30	26	18	24	1.98
20632294--20632658	158	2.3	158	85	1	471	25	31	24	17	1.97
20632294--20632723	159	2.7	159	81	2	490	25	30	26	17	1.97
20634320--20634371	25	2.0	26	92	3	88	25	19	26	28	1.98
20634528--20634580	26	2.0	26	92	7	90	30	20	22	26	1.98
20633602--20634606	521	1.9	521	84	0	1330	24	29	25	20	1.99
20635028--20635079	25	2.0	26	92	3	88	26	21	25	26	1.99
20636357--20636889	159	3.4	159	75	6	524	24	29	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20637031--20637083	26	2.0	26	92	7	90	28	20	24	26	1.99
20637215--20637267	26	2.0	26	85	0	70	30	20	24	24	1.99
20637029--20637706	184	3.6	183	77	10	595	25	25	25	22	2.00
20637596--20637648	26	2.0	26	88	0	79	28	16	26	28	1.97
20638344--20638774	159	2.7	159	77	4	431	26	29	25	18	1.98
20638820--20638872	26	2.0	26	89	7	81	24	16	28	30	1.97
20638503--20639569	317	3.2	338	74	13	947	24	28	26	21	1.99
20639492--20639544	26	2.0	26	92	0	88	24	18	28	28	1.98
20640041--20640093	26	2.0	26	89	7	81	32	18	20	28	1.97
20640249--20640301	26	2.0	26	88	0	79	28	18	26	26	1.98
20640973--20641025	26	2.0	26	89	7	81	30	18	22	28	1.98
20642925--20642980	26	2.2	26	86	0	76	30	23	17	28	1.97
20643113--20643165	26	2.0	26	89	7	81	28	24	18	28	1.98
20642855--20643520	196	3.5	184	79	7	681	19	27	28	24	1.99
20643309--20643361	26	2.0	26	92	0	88	28	28	18	24	1.98
20644852--20645272	184	2.3	184	82	4	535	20	25	29	24	1.99
20645147--20646749	159	9.8	159	72	10	889	18	27	31	23	1.97
20644939--20646091	502	2.3	502	86	0	1581	18	26	31	22	1.97
20645595--20646407	158	5.1	156	80	4	819	18	27	31	22	1.97
20646381--20646433	26	2.0	26	96	0	97	26	28	20	24	1.99
20646223--20646591	183	2.0	184	82	3	449	19	26	29	23	1.98
20646065--20646775	341	2.1	342	82	2	858	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20647446--20647498	26	2.0	26	96	0	97	26	28	20	24	1.99
20647472--20647911	159	2.8	155	77	9	447	20	27	30	21	1.98
20648864--20648916	26	2.0	26	85	7	72	30	22	16	30	1.96
20649720--20649770	26	2.0	26	92	7	86	31	23	15	29	1.95
20651477--20651526	25	2.0	25	88	0	73	24	30	18	28	1.97
20650852--20651841	535	1.8	536	83	4	1296	20	25	28	24	1.99
20652511--20652563	26	2.0	26	92	0	88	28	28	18	24	1.98
20652718--20652759	21	2.0	21	95	0	75	19	11	42	26	1.85
20653561--20653613	26	2.0	26	88	0	79	26	24	20	28	1.99
20653846--20653898	26	2.0	26	85	7	72	28	18	20	32	1.97
20654275--20654466	96	2.0	96	100	0	384	48	20	5	25	1.70
20654664--20654716	26	2.0	26	88	0	79	26	28	20	24	1.99
20654630--20655400	343	2.3	342	84	2	958	20	27	27	23	1.99
20656070--20656122	26	2.0	26	88	0	79	26	28	20	24	1.99
20656293--20656598	160	1.9	160	81	3	366	22	25	27	25	2.00
20656572--20656624	26	2.0	26	85	7	72	30	26	16	26	1.97
20656412--20656760	184	1.9	185	81	4	427	21	26	27	24	1.99
20657110--20657162	26	2.0	26	88	0	79	26	24	20	28	1.99
20656889--20657249	196	1.8	196	81	1	445	22	26	25	25	2.00
20657191--20657638	157	2.8	157	78	4	481	19	27	29	22	1.98
20657610--20657662	26	2.0	26	89	7	81	26	22	20	30	1.98
20657806--20657858	26	2.0	26	85	0	70	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20657579--20657944	196	1.9	196	82	1	464	20	25	28	25	1.99
20656883--20658175	696	1.9	697	85	1	1804	20	26	28	24	1.99
20657888--20658493	159	3.8	159	77	2	567	19	27	29	24	1.98
20658466--20658518	26	2.0	26	85	7	72	30	24	16	28	1.97
20664640--20664692	26	2.0	26	89	7	81	28	24	18	28	1.98
20665378--20665430	26	2.0	26	85	7	72	30	26	16	26	1.97
20666564--20666616	26	2.0	26	89	7	81	28	22	16	32	1.96
20666761--20666813	26	2.0	26	85	7	72	28	22	18	30	1.98
20666456--20666984	197	2.7	197	83	1	670	21	25	28	25	1.99
20667484--20667536	26	2.0	26	89	7	81	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125