genome.fa.s46.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  28  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5318650--5318696	23	2.0	23	95	0	85	31	14	12	40	1.84
5321394--5321460	35	2.0	33	85	5	89	37	5	7	49	1.56
5321502--5321526	12	2.1	12	100	0	50	48	0	0	52	1.00
5322437--5322496	3	21.0	3	80	13	56	63	0	0	36	0.95
5323456--5323508	20	2.7	19	72	18	54	26	0	1	71	0.96
5323915--5323963	15	3.1	15	88	5	62	46	26	2	24	1.63
5324025--5324065	21	2.0	21	85	9	57	48	24	0	26	1.51
5324011--5324095	23	3.8	23	74	10	61	48	22	1	28	1.58
5331437--5331729	110	2.7	108	80	5	313	23	20	17	38	1.93
5331588--5331952	193	1.9	195	82	5	461	21	17	17	43	1.88
5331804--5332069	110	2.5	110	80	6	310	20	17	18	43	1.88
5332335--5332478	34	4.3	34	76	10	107	26	17	9	46	1.79
5332246--5332962	102	7.0	102	85	3	818	22	17	11	48	1.78
5332246--5332962	204	3.5	204	86	2	922	22	17	11	48	1.78
5332688--5333175	238	2.1	237	82	3	588	20	18	11	49	1.78
5332244--5332962	306	2.4	306	84	2	933	22	17	10	48	1.78
5332246--5333064	306	2.7	306	82	3	828	22	17	11	48	1.79
5332845--5333064	68	3.2	68	69	10	187	21	16	12	49	1.79
5332910--5333097	34	5.6	34	73	8	141	19	18	12	50	1.77
5332806--5333097	136	2.2	135	85	0	395	20	19	11	48	1.80
5332926--5333131	101	2.0	102	86	2	290	21	15	12	50	1.77
5332932--5333167	101	2.3	102	83	2	278	20	16	12	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5333030--5333780	345	2.2	341	85	4	1017	21	17	13	47	1.81
5333030--5333780	174	4.4	171	84	4	904	21	17	13	47	1.81
5333030--5333883	345	2.5	341	83	6	937	21	17	12	48	1.81
5334155--5334184	15	2.0	15	93	0	51	50	0	0	50	1.00
5334871--5334900	15	2.0	15	93	0	51	83	6	3	6	0.90
5335343--5335376	3	11.3	3	87	12	52	67	0	0	32	0.91
5341345--5341408	24	2.7	24	90	2	94	67	0	3	29	1.06
5344902--5344934	12	2.6	13	80	9	50	21	0	15	63	1.30
5348904--5349125	58	3.8	58	77	9	250	33	13	7	45	1.71
5348904--5349123	120	1.8	118	83	5	291	33	13	7	46	1.70
5349169--5349234	12	5.1	12	77	17	53	75	1	4	18	1.04
5349189--5349242	18	3.2	18	71	7	51	75	1	9	12	1.11
5350122--5350146	4	6.2	4	100	0	50	76	0	0	24	0.80
5350136--5350173	14	2.7	15	84	12	53	73	7	5	13	1.22
5350172--5350212	12	3.6	12	78	21	52	60	7	7	24	1.48
5350296--5350424	24	5.2	25	72	15	83	73	1	2	22	1.03
5350349--5350423	6	12.2	6	80	18	75	77	1	1	20	0.92
5350299--5350423	30	4.1	30	67	11	76	74	1	2	21	1.02
5350621--5351125	42	12.1	41	88	2	679	36	21	17	24	1.95
5351365--5351469	43	2.4	44	79	9	108	33	14	12	40	1.83
5351389--5351469	43	1.9	42	87	2	117	34	14	11	39	1.82
5351509--5351548	22	1.9	20	90	10	62	32	15	10	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5352663--5352700	14	2.7	14	80	15	51	2	13	0	84	0.73
5352654--5352720	34	2.1	33	83	8	84	5	14	0	79	0.92
5352654--5352733	30	2.6	30	76	9	81	7	17	0	75	1.03
5352654--5352733	31	2.6	31	78	9	85	7	17	0	75	1.03
5356612--5356772	62	2.7	59	84	7	209	34	13	6	45	1.68
5356799--5356877	5	16.0	5	73	15	58	77	2	5	15	1.05
5356799--5356866	26	2.7	26	78	15	70	76	2	5	14	1.09
5356806--5356877	11	6.1	12	71	15	53	77	1	5	15	1.01
5356788--5356876	36	2.6	33	81	13	99	76	2	5	15	1.07
5357245--5357284	20	2.0	20	90	0	62	37	17	15	30	1.90
5357428--5357457	14	2.1	14	93	0	51	66	16	3	13	1.37
5357773--5357813	12	3.6	12	78	21	52	60	7	7	24	1.48
5357832--5357869	11	3.5	11	85	7	51	86	0	13	0	0.56
5357868--5358016	3	48.7	3	74	16	80	67	4	1	27	1.17
5357867--5358020	52	2.8	53	73	17	131	67	3	1	27	1.16
5357990--5358071	6	13.3	6	77	16	71	75	1	1	21	0.94
5357990--5358071	13	6.7	12	73	20	71	75	1	1	21	0.94
5357983--5358071	32	2.9	31	79	14	103	75	1	1	22	0.94
5357872--5358083	105	2.0	109	81	12	260	67	3	1	26	1.15
5367287--5367325	2	20.5	2	89	10	64	46	0	0	53	1.00
5372952--5372985	2	17.0	2	87	0	50	44	0	0	55	0.99
5389920--5389970	24	2.0	24	88	7	75	66	5	0	27	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5389920--5389972	26	2.0	26	85	7	72	67	5	0	26	1.12
5391499--5391524	12	2.2	12	100	0	52	46	0	0	53	1.00
5392222--5392267	2	23.0	2	100	0	92	50	0	0	50	1.00
5396391--5396434	22	2.0	22	95	0	79	18	29	13	38	1.89
5398489--5398531	18	2.3	19	80	12	52	53	0	2	44	1.13
5398496--5398531	18	1.9	19	88	5	56	50	0	2	47	1.15
5400920--5400945	2	13.0	2	100	0	52	50	0	0	50	1.00
5403527--5403556	5	6.0	5	100	0	60	60	20	20	0	1.37
5416361--5416439	25	3.1	25	70	13	70	48	1	0	50	1.08
5417268--5417304	12	3.2	12	82	17	51	75	0	0	24	0.80
5417785--5417823	18	2.4	15	87	12	51	38	0	0	61	0.96
5417999--5418049	21	2.3	23	83	6	61	41	0	1	56	1.10
5418645--5418689	4	11.2	4	85	0	54	48	22	6	22	1.73
5420064--5420142	30	2.7	30	98	2	151	46	22	7	22	1.77
5423155--5423823	336	2.0	336	91	0	1088	42	11	17	29	1.83
5428377--5428402	3	8.7	3	100	0	52	30	0	0	69	0.89
5429254--5429302	17	2.7	17	82	17	55	51	0	0	48	1.00
5429881--5429921	20	2.1	20	82	13	50	51	2	7	39	1.43
5430135--5430225	41	2.2	43	75	13	102	61	1	3	34	1.19
5430503--5430555	22	2.3	22	87	12	72	49	0	0	50	1.00
5430496--5430601	24	4.2	24	70	12	70	54	0	0	45	0.99
5430932--5430964	11	3.0	11	95	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5431010--5431050	18	2.2	19	86	4	57	31	4	0	63	1.15
5431054--5431130	32	2.4	32	80	16	97	57	2	0	40	1.13
5431119--5431161	22	2.0	22	90	0	68	62	2	0	34	1.08
5431527--5431597	35	2.0	36	81	10	83	54	2	1	40	1.23
5440948--5440998	22	2.5	22	90	9	81	49	0	0	50	1.00
5443179--5443223	8	5.8	8	86	2	65	60	0	0	40	0.97
5445654--5445685	12	2.7	12	95	0	55	37	0	9	53	1.34
5445781--5445821	17	2.3	19	87	8	59	51	0	0	48	1.00
5445831--5445867	17	2.1	18	90	5	58	64	0	0	35	0.94
5447757--5447801	23	2.0	22	86	8	63	35	6	0	57	1.25
5449423--5449498	39	2.0	37	82	5	89	53	0	0	46	1.00
5456107--5456168	31	2.0	30	82	14	74	50	0	1	48	1.10
5456471--5456511	17	2.5	17	88	11	59	4	21	12	60	1.50
5456942--5457001	22	2.7	23	77	15	63	45	0	1	53	1.10
5460450--5460474	6	4.2	6	100	0	50	52	16	32	0	1.44
5467305--5467337	10	3.7	9	88	12	50	3	9	0	87	0.63
5467408--5467453	6	8.0	6	76	9	51	78	0	2	19	0.86
5467408--5467453	17	2.7	17	83	6	58	78	0	2	19	0.86
5469668--5469719	22	2.4	22	81	9	61	55	1	3	38	1.29
5469703--5469763	26	2.3	27	85	5	79	59	0	0	40	0.98
5471386--5471468	31	2.7	29	78	15	78	50	7	6	36	1.55
5471459--5471522	29	2.2	30	77	8	69	59	0	3	37	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5483594--5483631	18	2.1	18	90	0	58	28	0	0	71	0.87
5483675--5483729	25	2.2	24	84	9	67	63	0	0	36	0.95
5483692--5483728	16	2.2	16	90	4	56	67	0	0	32	0.91
5485892--5485938	24	2.0	24	83	8	60	42	0	4	53	1.20
5489230--5489273	22	1.9	24	86	9	65	52	0	0	47	1.00
5494033--5494106	30	2.5	30	82	8	89	35	4	28	32	1.76
5506945--5507008	28	2.4	28	84	5	78	60	4	0	34	1.17
5507893--5507946	23	2.3	23	72	12	56	42	5	0	51	1.25
5512947--5512976	2	15.0	2	100	0	60	50	0	50	0	1.00
5513964--5514074	5	23.6	5	66	18	51	43	0	0	55	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125