genome.fa.s46.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  117  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21885999--21889042	181	17.0	180	76	6	2210	40	7	9	41	1.67
21885999--21892391	362	17.9	361	73	8	3897	40	8	9	41	1.68
21885999--21892391	719	9.0	713	73	10	3441	40	8	9	41	1.68
21889438--21889823	181	2.2	180	80	6	408	43	6	9	41	1.62
21889500--21889830	181	1.8	181	84	2	459	42	6	9	41	1.62
21889500--21889887	181	2.1	181	82	1	456	42	7	9	40	1.66
21889967--21892391	181	13.5	180	74	9	1619	40	8	9	41	1.68
21890561--21892292	893	1.9	887	80	6	2007	40	7	9	42	1.67
21892826--21892948	35	3.4	35	69	18	99	43	8	11	37	1.71
21892874--21893940	181	6.0	181	77	6	888	39	8	9	42	1.68
21894930--21895524	180	3.3	177	75	9	575	40	7	9	42	1.65
21894932--21895576	355	1.8	355	81	5	802	40	7	9	42	1.66
21895641--21897721	180	11.6	180	77	7	1849	41	8	9	40	1.68
21897454--21898050	319	1.9	319	84	3	799	41	8	11	39	1.70
21897746--21899967	181	12.4	179	75	6	1575	40	8	9	42	1.67
21899992--21900038	18	2.7	18	80	12	62	40	10	4	44	1.59
21899997--21900636	181	3.6	178	79	5	639	38	11	7	41	1.71
21900007--21901304	664	2.0	661	80	4	1481	39	10	8	41	1.70
21900639--21902062	182	7.9	181	77	4	1221	41	9	8	40	1.68
21900653--21902060	357	3.9	353	77	7	1149	41	9	8	40	1.68
21902028--21902101	36	2.1	36	94	0	130	48	5	4	41	1.45
21902143--21902453	171	1.8	171	82	6	398	41	10	6	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21902305--21902752	181	2.5	177	78	3	432	40	10	6	42	1.65
21902518--21903123	331	1.8	330	80	3	734	38	10	7	42	1.68
21903217--21904329	181	6.2	180	78	6	964	38	6	10	43	1.67
21903213--21904101	358	2.5	355	80	6	958	38	5	11	44	1.65
21903246--21904226	358	2.7	350	77	6	934	38	6	10	44	1.65
21905169--21905223	21	2.6	22	82	5	69	18	27	27	27	1.98
21905586--21905612	13	2.1	13	100	0	54	44	7	14	33	1.73
21906357--21908540	181	12.2	177	75	6	1537	41	9	9	39	1.70
21908417--21908648	125	1.9	124	83	5	306	40	8	11	39	1.72
21908542--21914752	181	34.3	180	70	12	1829	41	9	8	39	1.69
21908542--21911154	177	14.7	177	74	8	1629	40	10	9	39	1.71
21908542--21910808	536	4.2	531	77	7	1590	40	10	9	39	1.71
21908603--21911154	358	7.2	355	73	10	1203	40	10	9	39	1.71
21909406--21911158	535	3.3	533	76	6	1198	41	10	8	38	1.71
21911195--21914802	181	20.1	181	75	6	2185	41	9	8	40	1.68
21911197--21914799	361	10.0	361	75	6	2358	41	9	8	40	1.68
21911195--21914789	541	6.7	535	76	6	2428	41	9	8	40	1.68
21914512--21915084	295	1.9	296	93	0	986	46	9	7	36	1.65
21914358--21915275	476	1.9	475	79	3	1022	44	10	7	37	1.67
21914811--21915386	180	3.2	180	77	6	447	43	10	7	38	1.68
21914989--21915452	180	2.6	178	79	6	388	43	10	6	39	1.66
21915553--21915871	156	2.0	156	86	4	446	44	9	8	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21915709--21916696	191	5.4	177	73	12	580	40	9	8	41	1.68
21915776--21916698	178	5.1	179	76	8	733	39	9	8	42	1.68
21916699--21919157	179	13.8	180	74	8	1257	40	7	9	42	1.66
21917099--21917134	16	2.1	17	90	10	56	44	8	5	41	1.58
21916790--21924362	543	13.9	530	70	13	2225	40	8	9	41	1.68
21916704--21919158	353	6.9	356	75	8	1608	40	7	9	42	1.66
21916790--21924366	531	13.9	535	70	12	2520	40	8	9	41	1.68
21919040--21919244	113	1.8	113	82	2	268	40	7	9	42	1.66
21919040--21919271	113	2.1	113	81	4	263	40	8	8	43	1.65
21919170--21923524	361	12.1	361	75	7	3109	40	8	9	41	1.68
21919170--21924417	538	9.7	538	74	9	2790	40	8	9	41	1.68
21921877--21921927	16	2.9	18	74	11	61	43	5	9	41	1.62
21922414--21922461	17	2.7	19	84	12	66	45	4	10	39	1.58
21922414--21922457	18	2.6	16	85	10	52	45	4	9	40	1.56
21921945--21923524	359	4.4	358	76	7	1025	39	7	9	43	1.66
21919156--21923524	181	24.2	179	75	8	2614	40	8	9	41	1.68
21923368--21923677	157	2.0	157	82	3	374	39	8	9	43	1.66
21923733--21924084	181	2.0	180	80	4	395	40	9	10	39	1.71
21923936--21924309	180	2.1	180	79	7	393	42	8	9	39	1.67
21925538--21925614	38	2.0	38	97	0	145	31	33	9	25	1.87
21929110--21929152	21	2.1	20	87	12	61	32	20	0	46	1.51
21930649--21932919	181	12.8	179	73	11	1249	40	8	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21931661--21932872	171	7.0	169	72	12	661	40	7	8	43	1.64
21931527--21932465	343	2.7	340	80	8	1014	41	7	8	43	1.62
21931120--21932724	343	4.6	348	75	10	988	41	7	8	42	1.64
21931866--21932908	523	2.0	522	80	5	1172	41	7	7	42	1.63
21932386--21932722	180	1.9	181	80	7	400	42	7	6	43	1.60
21934591--21934667	38	2.0	38	94	0	136	31	32	9	27	1.88
21935286--21935320	16	2.2	16	94	0	61	42	11	14	31	1.81
21940176--21941636	180	8.2	181	75	8	710	40	8	10	40	1.70
21940176--21942209	360	5.7	357	74	9	1245	39	8	10	41	1.70
21940449--21941636	180	6.6	177	75	7	773	40	8	9	41	1.69
21941097--21941129	18	1.9	17	88	11	50	48	12	6	33	1.65
21941505--21941567	24	2.6	24	78	12	67	36	1	1	60	1.16
21941531--21941577	24	2.0	23	84	12	60	38	2	2	57	1.23
21941347--21941976	338	1.9	339	81	4	788	40	7	10	41	1.68
21941640--21942209	180	3.2	177	79	3	568	39	7	10	41	1.69
21943436--21943573	67	2.1	67	84	0	177	44	7	8	39	1.65
21943503--21948444	180	27.4	181	73	9	3247	40	8	9	41	1.68
21946402--21946451	25	2.0	25	88	0	73	40	10	12	38	1.76
21946427--21948444	357	5.6	362	75	7	1468	40	8	9	40	1.69
21947443--21948449	179	5.6	181	77	7	516	41	8	9	40	1.68
21948685--21949092	182	2.2	181	80	3	426	38	11	9	40	1.74
21948822--21949395	303	1.9	302	82	1	711	38	10	8	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21949118--21952168	181	17.1	181	75	7	2258	40	9	8	40	1.69
21949118--21951519	887	2.7	882	77	9	2349	40	9	9	40	1.70
21949118--21952168	887	3.4	878	74	10	2286	40	9	8	40	1.69
21949220--21952168	529	5.5	522	73	10	2055	41	9	8	40	1.69
21952211--21952251	17	2.4	18	80	15	52	0	17	0	82	0.66
21952376--21952423	22	2.2	22	92	0	78	45	14	14	25	1.83
21953331--21953380	20	2.3	22	86	10	68	70	6	0	24	1.10
21955922--21955963	21	2.0	21	81	13	50	38	14	19	28	1.90
21961182--21961216	18	1.9	18	88	0	52	8	22	0	68	1.16
21965479--21966031	47	11.6	47	81	9	586	26	12	21	38	1.90
21965479--21966032	97	5.8	96	86	4	730	26	12	21	38	1.90
21965479--21966049	193	3.0	193	86	3	775	26	12	21	38	1.90
21966043--21966101	28	2.1	28	87	0	82	30	13	10	45	1.76
21966456--21966520	23	2.8	23	97	0	121	40	12	18	29	1.87
21967415--21967439	13	1.9	13	100	0	50	56	4	0	40	1.18
21968479--21969170	181	3.9	176	76	8	587	40	9	8	40	1.69
21969216--21969267	18	2.9	18	69	13	54	40	7	7	44	1.62
21968828--21969577	399	1.9	392	81	5	920	40	10	8	40	1.69
21968670--21969783	575	1.9	570	79	6	1223	40	10	8	40	1.69
21969217--21970671	181	8.1	180	77	7	871	40	9	9	40	1.68
21970522--21970783	143	1.8	145	85	4	379	44	9	6	40	1.62
21970659--21972641	179	11.0	177	71	11	978	41	10	8	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21971315--21972417	546	2.0	548	81	5	1277	42	10	8	38	1.70
21973016--21973584	180	3.1	180	77	5	488	43	9	7	39	1.67
21973482--21973764	155	1.8	155	87	3	426	42	10	7	39	1.68
21973635--21976410	181	15.4	181	76	8	1945	41	10	7	40	1.68
21974336--21974376	18	2.4	17	88	8	57	41	4	7	46	1.53
21973635--21976409	540	5.1	527	76	9	1884	41	10	8	40	1.68
21975117--21975503	198	2.0	196	82	4	474	41	10	7	40	1.68
21975312--21976236	175	5.2	180	75	8	486	41	10	7	40	1.68
21976859--21976911	24	2.3	22	72	15	52	39	1	1	56	1.21
21976652--21977359	181	3.9	179	78	6	565	40	7	10	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125