genome.fa.s46.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  14  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2263725--2263768	17	2.6	17	96	0	79	40	15	2	40	1.60
2267832--2267863	13	2.3	15	89	10	50	46	0	0	53	1.00
2270031--2270064	17	2.0	17	88	0	50	41	0	0	58	0.98
2270507--2270532	2	13.0	2	100	0	52	50	0	0	50	1.00
2270972--2271025	22	2.5	22	80	14	58	27	0	1	70	0.98
2279520--2279585	24	2.8	24	78	17	77	62	1	4	31	1.25
2284773--2284802	6	5.0	6	95	0	51	16	33	3	46	1.64
2285872--2285925	27	2.0	27	96	3	101	57	0	0	42	0.98
2287856--2287919	24	2.7	24	82	0	74	39	9	6	45	1.62
2288135--2288166	2	16.0	2	100	0	64	50	0	0	50	1.00
2291187--2291211	13	1.9	13	100	0	50	64	0	0	36	0.94
2291264--2291327	24	2.6	24	78	11	67	59	1	6	32	1.32
2297012--2297037	3	8.7	3	100	0	52	0	0	34	65	0.93
2300977--2301040	29	2.2	29	85	0	92	32	4	20	42	1.73
2312679--2312750	35	2.1	35	94	0	126	43	13	15	27	1.85
2327461--2327528	23	3.0	23	89	2	102	77	0	13	8	0.98
2327473--2327572	21	4.5	21	77	20	105	79	0	15	6	0.92
2327471--2327573	23	4.8	21	77	20	81	77	0	14	7	0.97
2327501--2327582	29	2.9	30	70	15	75	78	0	15	6	0.95
2327463--2327582	60	2.0	60	81	10	142	76	0	15	7	1.00
2328746--2328807	21	2.9	22	85	2	90	35	8	17	38	1.80
2329240--2329617	40	9.3	40	80	6	379	21	11	18	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2329232--2329617	80	4.8	80	84	4	445	22	11	18	47	1.81
2329232--2329592	120	3.0	120	82	7	426	21	11	18	47	1.80
2330261--2330322	32	1.9	32	86	0	88	24	4	8	62	1.42
2331017--2331050	16	2.1	16	88	0	50	76	2	14	5	1.09
2331113--2331241	60	2.2	58	87	4	186	41	10	6	41	1.65
2331203--2331253	16	3.2	16	71	0	57	49	3	7	39	1.51
2331204--2331271	32	2.1	32	97	0	127	45	5	10	38	1.63
2331321--2331381	13	5.0	12	77	16	56	81	0	6	11	0.85
2331325--2331385	23	2.6	23	87	10	79	81	0	4	13	0.83
2331348--2331400	23	2.2	23	90	6	79	81	1	1	15	0.87
2331325--2331399	6	12.5	6	76	18	68	80	1	4	14	0.93
2331345--2331409	17	3.9	16	84	7	85	81	1	3	13	0.88
2331329--2331407	11	7.2	11	77	13	65	81	1	5	12	0.92
2331325--2331400	25	3.1	23	85	11	82	80	1	3	14	0.92
2331428--2331467	3	13.0	3	89	5	62	65	0	2	32	1.06
2331466--2331496	14	2.3	14	94	5	55	80	3	0	16	0.83
2332291--2332461	4	42.5	4	67	16	70	63	1	3	30	1.21
2332315--2332461	14	10.2	14	69	19	81	63	2	3	31	1.22
2332293--2332383	42	2.2	42	86	7	123	62	1	3	32	1.18
2332325--2332456	20	6.7	20	75	15	89	63	1	3	31	1.19
2332301--2332453	18	8.9	17	75	11	125	64	1	3	31	1.18
2332293--2332411	42	2.9	42	79	8	111	63	1	3	31	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2332483--2332521	7	5.9	7	85	11	55	76	2	0	20	0.90
2332476--2332516	14	2.9	14	85	0	55	78	2	2	17	0.98
2332476--2332519	21	2.2	19	84	8	52	79	2	2	15	0.93
2332700--2333050	46	7.9	45	78	8	339	41	19	13	25	1.88
2332886--2333040	85	1.9	82	87	4	229	34	20	16	28	1.94
2332716--2333110	125	3.0	125	78	9	330	41	19	13	25	1.88
2332992--2333180	41	4.6	41	77	10	170	40	17	12	29	1.87
2344572--2344616	19	2.4	19	88	0	63	80	0	11	8	0.92
2344729--2344820	30	3.1	29	65	17	80	38	16	5	40	1.71
2344668--2344941	59	4.7	58	85	6	365	38	12	6	42	1.68
2344673--2344941	118	2.3	117	89	5	402	38	12	5	43	1.67
2344968--2345030	31	2.1	31	82	8	76	79	1	4	14	0.97
2344968--2345117	10	14.2	10	69	24	62	72	3	2	22	1.12
2345051--2345115	4	17.5	4	87	12	79	73	0	0	26	0.83
2345951--2346077	42	3.0	41	83	12	134	63	0	3	31	1.18
2345951--2346066	20	5.6	20	72	16	83	64	0	4	30	1.18
2345977--2346146	4	43.5	4	70	14	72	65	1	2	30	1.18
2345964--2346146	14	13.5	13	68	23	85	64	1	3	30	1.19
2345965--2346146	42	4.4	41	77	13	130	64	1	3	30	1.19
2346032--2346131	31	3.3	29	73	18	87	65	1	3	31	1.15
2345977--2346146	20	8.9	19	71	22	85	65	1	2	30	1.18
2349856--2349881	13	2.0	13	100	0	52	23	30	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2351667--2351763	48	2.0	48	100	0	194	16	20	25	37	1.93
2361661--2361711	26	2.0	26	100	0	102	50	0	11	37	1.39
2361682--2361747	16	4.0	16	77	12	53	56	3	6	34	1.40
2374367--2374440	32	2.3	32	88	9	116	44	14	8	32	1.75
2374431--2374479	19	2.4	21	86	10	66	53	6	4	36	1.45
2374704--2374728	9	2.8	9	100	0	50	44	0	0	56	0.99
2375701--2375752	19	2.8	19	75	16	56	55	0	1	42	1.10
2375701--2375754	18	3.0	18	76	12	58	55	0	1	42	1.10
2375893--2375917	5	5.0	5	100	0	50	20	0	0	80	0.72
2376221--2376263	18	2.4	18	80	0	50	46	2	2	48	1.27
2377502--2377544	20	2.2	20	91	8	70	53	4	16	25	1.62
2378250--2378514	87	3.1	86	89	1	395	42	17	16	23	1.88
2378189--2378514	43	7.5	43	82	4	359	42	17	15	24	1.88
2389930--2389968	8	5.0	8	84	6	53	74	0	12	12	1.08
2390032--2390188	58	2.7	60	85	2	210	35	10	5	49	1.59
2390118--2390255	71	1.9	72	88	2	206	39	8	5	46	1.57
2390304--2390337	5	6.6	5	96	3	59	82	0	0	17	0.67
2390285--2390337	15	3.2	16	86	10	63	79	0	0	20	0.74
2390373--2390397	4	6.2	4	100	0	50	76	0	0	24	0.80
2390653--2390685	17	2.0	17	88	5	50	0	24	0	75	0.80
2390820--2390859	21	2.0	21	85	5	55	45	7	5	42	1.54
2391188--2391264	3	25.7	3	80	15	79	70	1	1	27	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2391188--2391266	17	4.4	18	77	19	85	70	1	1	26	1.02
2391177--2391269	36	2.6	35	84	5	105	70	3	1	24	1.08
2391831--2391871	22	1.9	22	85	14	59	43	0	2	53	1.13
2397056--2397080	6	4.2	6	100	0	50	0	16	0	84	0.63
2397176--2397242	34	2.0	34	90	0	107	38	2	0	58	1.14
2399069--2399117	22	2.2	21	82	10	62	57	2	0	40	1.10
2399819--2399853	17	2.0	18	88	5	54	51	0	2	45	1.16
2400337--2400372	17	2.1	17	100	0	72	44	13	0	41	1.44
2402169--2402217	12	4.0	12	76	12	55	42	0	48	8	1.32
2406335--2406388	24	2.2	24	93	0	90	59	5	5	29	1.43
2406476--2406549	32	2.3	32	86	9	107	45	14	6	32	1.71
2418218--2418259	17	2.4	18	80	7	52	73	0	2	23	0.94
2420710--2420763	24	2.2	24	90	0	90	59	5	5	29	1.43
2420851--2420924	32	2.3	32	88	9	116	44	14	8	32	1.75
2422020--2422070	23	2.2	23	82	6	59	33	0	7	58	1.27
2422174--2422227	18	3.0	18	78	10	58	57	0	0	42	0.98
2422697--2422739	18	2.4	18	80	0	50	46	2	2	48	1.27
2423427--2423614	60	3.2	58	86	3	241	36	9	7	46	1.65
2424449--2424478	3	10.3	3	92	7	53	66	0	0	33	0.92
2424500--2424536	19	2.1	18	90	10	58	83	2	0	13	0.74
2424721--2424929	44	4.8	43	83	4	222	41	22	13	23	1.89
2424758--2424933	87	2.0	88	85	1	237	42	21	14	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2424938--2425177	43	5.6	43	84	5	315	43	18	15	22	1.87
2424839--2425034	105	1.9	105	91	4	324	40	19	15	24	1.91
2424934--2425177	86	2.8	86	91	4	377	43	18	15	22	1.88
2424789--2425077	148	1.9	149	92	0	481	41	20	15	23	1.90
2424758--2425120	191	1.9	193	87	3	545	41	20	15	23	1.89
2425088--2425268	100	1.8	101	84	3	249	44	18	14	22	1.85
2426283--2426312	15	1.9	16	93	6	53	10	3	0	86	0.67
2430101--2430129	15	1.9	15	100	0	58	51	6	20	20	1.70
2434981--2435021	22	1.9	22	85	14	59	43	0	2	53	1.13
2440329--2440395	34	2.0	34	93	0	116	40	2	0	56	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125