genome.fa.s46.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  68  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13405761--13405805	22	2.0	22	83	8	56	53	8	8	28	1.62
13405766--13405823	22	2.6	21	78	10	62	51	10	8	29	1.65
13405787--13405916	66	2.0	66	80	3	145	45	4	11	38	1.61
13405809--13405932	22	5.6	22	83	0	131	43	2	12	41	1.56
13405808--13405932	66	1.9	67	83	5	164	44	2	12	40	1.56
13406030--13406089	22	2.7	22	76	0	66	40	10	13	36	1.78
13406549--13406610	21	3.0	20	79	9	61	45	12	9	32	1.75
13411024--13411299	106	2.6	106	94	2	475	44	11	5	38	1.64
13417661--13417709	23	2.1	24	92	3	82	65	8	16	10	1.46
13419734--13419773	3	14.0	3	94	5	66	70	0	0	30	0.88
13422237--13422284	18	2.6	18	83	3	60	31	14	12	41	1.83
13422239--13422297	19	3.2	19	85	2	75	35	13	13	37	1.84
13422395--13422461	34	2.0	34	90	0	107	35	17	7	38	1.78
13422386--13422480	17	5.5	17	70	16	61	31	18	10	38	1.85
13422818--13422956	49	2.8	49	77	9	149	30	13	13	41	1.83
13435826--13435851	4	6.5	4	100	0	52	76	0	0	23	0.78
13449572--13449600	11	2.6	11	100	0	58	44	20	6	27	1.77
13449639--13449713	29	2.6	29	89	0	114	46	33	5	14	1.67
13449685--13449743	19	3.2	19	87	2	84	45	32	1	20	1.61
13449719--13449783	18	3.7	18	80	10	64	47	38	0	13	1.43
13452108--13452197	10	9.2	9	70	20	56	20	4	3	72	1.17
13452107--13452139	15	2.1	16	88	5	50	18	3	3	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13452104--13452143	20	2.0	20	90	0	62	20	2	2	75	1.04
13452338--13452411	38	1.9	38	83	5	96	37	12	12	37	1.80
13457473--13457853	195	2.0	195	91	0	627	35	16	19	28	1.93
13463268--13463328	9	7.8	8	80	15	58	77	1	14	6	1.05
13463269--13463308	20	2.0	21	95	5	73	80	0	12	7	0.91
13463262--13463319	28	2.0	28	90	3	89	79	0	15	5	0.90
13463262--13463335	15	4.8	16	74	14	50	78	1	14	5	1.00
13464436--13464655	77	2.9	76	83	3	262	24	15	17	42	1.87
13464436--13464655	38	5.7	38	77	4	201	24	15	17	42	1.87
13464512--13464656	39	3.7	39	85	1	175	24	14	16	44	1.85
13465808--13465848	19	2.0	21	90	9	68	26	0	2	70	0.99
13470592--13470628	17	2.1	17	90	5	56	40	10	21	27	1.86
13470676--13470780	38	2.7	40	86	5	137	15	0	38	45	1.52
13470681--13470780	19	5.2	20	77	10	102	14	1	39	46	1.51
13475159--13475197	10	4.1	10	80	12	55	0	12	0	87	0.55
13475159--13475199	18	2.3	18	91	4	66	0	12	0	87	0.53
13475519--13475556	20	1.9	20	94	0	67	0	23	2	73	0.95
13476753--13476818	10	6.1	10	72	13	51	7	12	3	77	1.09
13477575--13477827	39	6.9	39	72	14	184	34	9	21	34	1.86
13478085--13478127	5	8.8	5	80	14	54	0	2	16	81	0.79
13478090--13478128	19	2.1	19	90	4	62	0	2	15	82	0.79
13479735--13479769	18	1.9	18	88	0	52	40	8	22	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13479837--13479884	19	2.6	19	90	3	71	16	0	41	41	1.48
13481758--13481790	18	1.9	18	88	11	52	27	18	6	48	1.71
13482819--13482856	16	2.3	17	86	13	53	18	15	5	60	1.53
13484573--13484614	16	2.5	17	81	14	52	47	4	19	28	1.69
13484673--13484713	19	2.2	19	90	0	64	19	0	39	41	1.52
13484672--13484751	19	4.2	18	70	10	61	17	2	38	41	1.63
13484776--13484831	14	3.9	14	86	4	76	26	3	25	44	1.70
13485795--13485840	14	3.5	14	80	8	53	4	21	0	73	1.00
13486789--13486839	21	2.4	21	83	3	57	3	7	7	80	1.01
13486863--13486900	12	3.4	11	86	13	51	13	0	2	84	0.73
13488396--13488452	15	3.9	15	75	11	64	12	21	5	61	1.50
13493019--13493172	76	2.0	76	98	0	299	52	15	9	22	1.71
13498124--13498177	20	2.7	20	77	11	56	81	5	9	3	0.97
13498656--13498716	26	2.4	25	76	15	63	72	1	18	8	1.18
13498653--13498689	19	2.1	17	90	10	56	72	0	16	10	1.10
13498631--13498692	17	3.8	16	74	19	56	72	1	16	9	1.18
13498663--13498715	21	2.7	19	82	8	61	71	1	20	5	1.16
13501825--13501902	26	2.9	26	80	12	79	37	10	12	39	1.78
13502236--13502295	25	2.3	26	85	5	86	33	18	20	28	1.96
13503008--13503181	84	2.1	84	81	2	197	32	16	16	35	1.91
13513954--13514028	29	2.6	29	89	0	105	45	36	6	12	1.68
13513965--13514004	18	2.2	18	86	8	55	45	35	7	12	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13514077--13514128	19	2.7	19	93	0	86	40	42	3	13	1.62
13514122--13514186	34	1.9	34	87	6	96	46	36	1	15	1.55
13514167--13514209	18	2.3	18	88	11	61	44	34	4	16	1.68
13514238--13514282	18	2.4	19	82	14	58	40	42	4	13	1.64
13516479--13516559	40	2.0	40	95	0	144	24	18	4	51	1.65
13523912--13523975	2	32.0	2	87	6	67	46	6	3	43	1.44
13524067--13524116	16	3.1	16	80	11	66	38	6	4	52	1.45
13524626--13524673	13	3.8	12	84	10	53	8	10	2	79	1.02
13530356--13530395	17	2.3	18	83	12	57	25	0	12	62	1.30
13530810--13530936	61	2.0	63	80	5	143	24	7	15	51	1.70
13538723--13538753	16	1.9	16	93	0	53	61	0	0	38	0.96
13543974--13544060	42	2.1	42	93	0	147	47	12	11	28	1.76
13550536--13550574	20	2.0	20	84	0	51	20	10	7	61	1.52
13553711--13553752	18	2.3	18	88	8	59	26	21	2	50	1.61
13554280--13554319	21	1.9	21	89	0	62	40	10	2	47	1.50
13564923--13565005	42	2.0	42	92	4	141	36	12	19	32	1.88
13566512--13566538	13	2.1	13	100	0	54	25	14	14	44	1.84
13566771--13566797	11	2.5	11	100	0	54	18	18	18	44	1.87
13566879--13566913	15	2.4	15	90	4	54	62	17	0	20	1.32
13570580--13570629	20	2.4	21	83	9	59	6	48	0	46	1.27
13570768--13570910	59	2.4	59	81	8	164	19	3	20	55	1.57
13570900--13570984	43	2.0	43	88	0	125	24	2	16	56	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13571300--13571388	38	2.4	37	83	5	108	35	2	6	55	1.39
13572572--13572916	170	2.0	171	88	2	516	31	17	19	31	1.95
13573450--13573704	124	2.1	124	93	1	431	20	21	17	40	1.91
13591379--13591421	21	2.0	21	82	8	52	30	16	4	48	1.66
13594058--13594083	11	2.4	11	100	0	52	42	7	30	19	1.79
13605021--13605059	21	1.9	20	94	5	69	20	17	10	51	1.74
13605099--13605141	20	2.2	20	82	0	50	20	16	9	53	1.70
13613659--13613716	29	2.0	29	100	0	116	37	10	13	37	1.79
13626137--13626169	17	1.9	17	88	11	50	24	21	6	48	1.72
13626666--13626847	91	2.0	91	94	0	319	17	14	17	51	1.76
13627993--13628127	69	2.0	69	83	5	175	35	13	16	34	1.87
13638041--13638084	22	2.1	22	91	8	74	29	6	13	50	1.68
13643093--13643143	22	2.3	22	96	0	93	41	5	23	29	1.78
13645637--13645696	32	1.9	31	83	10	77	23	3	15	58	1.52
13645973--13645998	12	2.2	12	100	0	52	61	0	7	30	1.24
13649457--13649497	18	2.3	19	83	8	50	68	9	9	12	1.40
13654712--13655520	201	4.0	201	85	3	970	28	16	13	40	1.87
13663343--13663586	56	4.5	56	72	15	215	26	12	10	50	1.72
13663373--13663588	105	2.1	105	89	3	328	25	11	10	53	1.67
13664636--13664665	8	3.9	8	91	8	53	23	0	0	76	0.78
13664636--13664664	15	1.9	15	100	0	58	24	0	0	75	0.80
13665013--13665134	61	2.0	61	87	3	174	45	18	13	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665054--13665094	20	2.0	20	85	0	55	46	14	17	21	1.84
13665065--13665201	41	3.4	41	87	5	136	42	17	13	27	1.86
13665081--13665314	41	5.6	41	84	7	240	42	19	11	26	1.86
13665588--13665637	21	2.3	22	93	6	93	32	16	16	36	1.90
13665663--13665780	58	2.0	58	83	1	146	31	16	16	35	1.91
13665789--13665852	21	3.0	21	82	15	78	40	15	7	35	1.76
13666169--13666212	23	2.0	22	82	13	54	27	22	4	45	1.72
13667078--13667125	8	5.8	8	83	9	60	8	6	0	85	0.74
13667068--13667142	26	2.9	25	76	11	80	5	13	0	81	0.86
13667068--13667151	34	2.4	34	86	4	105	5	14	0	79	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125