genome.fa.s46.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  19  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3332623--3333204	226	2.5	230	82	4	647	38	13	22	24	1.91
3332623--3333204	114	5.1	117	78	6	548	38	13	22	24	1.91
3333442--3333585	41	3.5	41	78	4	139	31	18	14	35	1.91
3334060--3334166	48	2.2	51	84	6	148	13	17	15	53	1.73
3334046--3334159	48	2.4	48	78	7	126	14	21	14	50	1.76
3337667--3337693	5	5.4	5	100	0	54	44	0	37	18	1.50
3344412--3344452	21	2.0	21	90	9	66	31	4	4	58	1.40
3345535--3345631	3	32.7	3	79	10	92	70	2	3	24	1.13
3349585--3349652	36	1.9	35	84	3	91	39	4	8	47	1.55
3349911--3349962	6	9.0	6	87	8	72	38	0	0	61	0.96
3349912--3349956	22	2.0	22	91	0	72	40	0	0	60	0.97
3351564--3351629	26	2.6	27	83	11	86	34	1	9	54	1.41
3358473--3358548	22	3.4	22	71	10	73	35	18	10	35	1.85
3358474--3358543	23	3.1	23	74	10	81	37	15	11	35	1.84
3358745--3358772	2	14.0	2	100	0	56	50	0	0	50	1.00
3359797--3359843	18	2.6	18	100	0	94	23	17	34	25	1.96
3364960--3365008	25	1.9	25	87	4	71	44	4	0	51	1.20
3364959--3365013	25	2.2	25	80	6	67	40	3	0	56	1.17
3368438--3368577	51	2.7	51	77	12	135	40	11	12	35	1.80
3384191--3384234	23	2.0	22	86	4	61	56	0	2	40	1.11
3386696--3386780	43	2.0	43	92	0	143	27	15	32	24	1.95
3391468--3391500	15	2.1	17	88	11	52	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3392425--3392476	21	2.5	21	90	6	79	50	0	0	50	1.00
3392425--3392476	22	2.5	22	93	6	90	50	0	0	50	1.00
3392449--3392509	30	2.0	30	87	0	86	54	0	0	45	1.00
3403751--3403781	4	7.8	4	92	0	53	51	0	22	25	1.48
3403751--3403790	12	3.3	12	92	0	62	52	2	20	25	1.59
3405183--3405215	15	2.3	15	89	5	50	3	15	0	81	0.80
3405178--3405239	24	2.6	23	80	16	72	4	14	1	79	0.98
3406176--3406210	15	2.3	15	90	0	52	60	5	8	25	1.49
3407544--3407587	15	3.1	15	78	18	58	54	0	2	43	1.12
3407542--3407583	21	2.0	21	90	0	66	50	0	2	47	1.14
3407556--3407588	12	2.8	12	95	0	57	54	0	0	45	0.99
3408635--3408684	18	2.8	19	75	22	54	20	0	8	72	1.10
3408767--3408842	17	4.6	17	73	12	52	71	1	2	25	1.07
3408739--3408844	23	4.6	24	69	21	66	70	0	4	23	1.12
3409183--3409228	14	3.2	14	78	6	56	47	34	0	17	1.48
3409248--3409301	16	3.4	16	82	7	58	51	27	0	20	1.47
3409303--3409340	15	2.6	15	87	4	51	55	23	0	21	1.44
3415596--3415628	15	2.2	16	89	10	52	33	9	9	48	1.66
3421812--3421866	24	2.3	25	78	15	62	67	1	30	0	1.01
3422208--3422257	6	8.3	6	81	0	55	40	0	10	50	1.36
3422208--3422257	4	12.5	4	91	0	55	40	0	10	50	1.36
3422257--3422284	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3424162--3424193	3	10.7	3	100	0	64	34	0	0	65	0.93
3426512--3426673	80	2.0	80	97	0	306	40	12	11	35	1.79
3427492--3427636	52	2.8	52	87	0	191	26	24	8	40	1.83
3427673--3427704	11	2.9	11	95	0	55	46	28	0	25	1.53
3427917--3427977	23	2.6	23	82	10	70	21	34	8	36	1.83
3427917--3428019	25	4.2	24	78	7	93	23	34	6	34	1.81
3427917--3428040	50	2.5	50	83	5	137	23	34	7	34	1.82
3427960--3428040	25	3.2	25	73	13	76	23	35	6	34	1.80
3428042--3428118	31	2.5	31	84	0	100	31	23	18	27	1.97
3428605--3428761	52	3.0	52	85	0	206	26	23	8	41	1.83
3428786--3428817	11	2.9	11	95	0	55	46	28	0	25	1.53
3429032--3429092	23	2.6	23	82	10	70	21	34	8	36	1.83
3429032--3429134	25	4.2	24	78	7	93	23	34	6	34	1.81
3429032--3429155	50	2.5	50	83	5	137	23	34	7	34	1.82
3429075--3429155	25	3.2	25	73	13	76	23	35	6	34	1.80
3429157--3429233	31	2.5	31	86	0	109	31	23	16	28	1.96
3429720--3429876	52	3.0	52	85	1	190	26	24	8	40	1.84
3429901--3429932	11	2.9	11	95	0	55	46	28	0	25	1.53
3430731--3430758	2	14.0	2	100	0	56	50	0	0	50	1.00
3439361--3439386	2	13.0	2	100	0	52	50	0	0	50	1.00
3439947--3440009	21	3.1	21	76	10	53	47	0	44	7	1.32
3439965--3440044	12	6.7	12	74	5	54	48	1	43	6	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3439978--3440020	18	2.6	17	79	13	54	55	0	39	4	1.20
3440724--3440749	2	13.0	2	100	0	52	0	50	0	50	1.00
3442458--3442490	6	5.5	6	92	0	57	15	15	0	69	1.19
3443754--3443792	18	2.0	21	85	14	57	43	0	0	56	0.99
3447485--3447509	13	1.9	13	100	0	50	0	8	0	92	0.40
3448648--3448724	32	2.4	31	78	20	79	57	3	1	37	1.26
3448842--3448916	29	2.5	30	78	4	89	58	2	4	34	1.31
3451036--3451087	23	2.3	23	100	0	104	26	13	17	42	1.86
3460122--3460180	25	2.6	23	79	12	68	44	1	6	47	1.39
3460274--3460324	21	2.4	21	80	0	57	33	3	5	56	1.42
3461150--3461183	18	1.9	17	94	5	59	41	0	2	55	1.15
3464432--3464533	43	2.4	42	80	6	107	50	6	2	39	1.44
3464457--3464526	21	3.3	21	65	11	52	47	8	2	41	1.49
3475921--3475962	21	2.0	22	90	4	68	50	0	2	47	1.14
3477375--3477411	8	4.8	8	83	16	51	48	0	2	48	1.15
3477379--3477409	14	2.1	15	94	5	55	45	0	3	51	1.17
3480405--3480442	12	2.8	14	80	19	53	31	7	5	55	1.51
3480415--3480441	12	2.2	12	100	0	54	29	7	7	55	1.55
3480954--3481072	62	1.9	63	87	1	177	21	1	26	49	1.59
3481020--3481051	15	2.1	15	94	0	55	15	0	25	59	1.36
3481092--3481273	28	6.4	28	72	15	115	20	0	30	49	1.49
3481099--3481150	14	3.7	14	75	10	52	17	0	26	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3481117--3481164	14	3.4	14	75	11	53	20	0	31	47	1.50
3481112--3481266	57	2.7	58	82	6	158	21	0	29	49	1.50
3481231--3481284	20	2.7	20	85	2	63	20	0	29	50	1.49
3481266--3481327	14	4.4	14	76	6	63	19	1	27	51	1.56
3481580--3481616	16	2.3	16	95	0	65	21	45	2	29	1.65
3482925--3483073	15	9.8	15	71	12	99	48	31	0	18	1.53
3482930--3483124	16	13.5	14	68	20	100	48	32	0	18	1.52
3482926--3483073	30	4.9	31	79	9	146	48	31	0	18	1.53
3483020--3483126	51	2.1	50	84	10	137	51	34	0	14	1.42
3484232--3484313	31	2.6	30	80	5	74	31	7	0	60	1.24
3485779--3485833	28	2.0	28	92	7	94	50	14	12	21	1.76
3486020--3486237	108	2.0	108	97	0	409	41	9	11	37	1.75
3487126--3487204	21	3.8	21	72	11	72	48	6	3	41	1.47
3487245--3487282	19	2.0	19	85	10	51	57	5	5	31	1.43
3487357--3487426	22	3.2	21	70	8	59	47	4	12	35	1.62
3487349--3487900	44	12.8	44	68	12	114	49	4	8	37	1.53
3487561--3487602	21	2.0	20	90	4	66	54	4	9	30	1.53
3487484--3487900	22	19.3	21	67	14	109	51	4	7	36	1.51
3488262--3488324	21	2.9	22	88	6	76	52	0	4	42	1.22
3488276--3488452	22	8.1	21	74	11	99	47	2	9	40	1.50
3488254--3488317	29	2.2	27	77	20	67	53	0	3	43	1.16
3488402--3488476	25	3.2	25	68	14	68	46	4	10	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3488480--3488535	21	2.6	22	80	11	71	48	3	8	39	1.52
3488601--3488643	8	5.2	8	78	15	52	58	2	2	37	1.24
3488564--3488717	22	7.0	21	72	19	100	51	3	6	38	1.44
3488603--3488659	25	2.3	25	78	6	62	56	3	3	36	1.34
3488616--3488745	66	2.0	67	80	10	151	48	3	7	40	1.47
3488631--3488737	44	2.4	44	81	3	108	48	2	7	41	1.46
3488751--3488850	22	4.8	22	62	16	52	47	10	5	38	1.59
3488836--3488961	66	1.9	66	82	6	157	48	9	3	38	1.54
3488799--3488930	22	6.0	22	73	3	77	47	9	3	39	1.53
3488836--3488961	22	5.7	22	75	0	90	48	9	3	38	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125