genome.fa.s46.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  65  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12958400--12958682	146	1.9	146	82	4	347	42	10	8	37	1.71
12957263--12962276	720	7.1	704	72	12	2722	40	10	8	40	1.70
12958532--12960603	181	11.6	180	75	9	1462	39	10	8	40	1.71
12958547--12959711	538	2.2	538	78	5	1180	40	10	9	40	1.71
12959577--12959881	169	1.8	169	85	5	429	35	12	10	41	1.78
12959080--12960604	359	4.3	360	76	9	1103	40	10	8	40	1.71
12960459--12960769	166	1.9	164	82	7	398	41	11	7	40	1.69
12960820--12962276	181	8.1	181	75	7	1066	41	9	8	40	1.69
12962236--12962373	67	2.1	67	86	5	190	36	12	7	44	1.70
12962788--12962830	18	2.3	19	88	8	61	48	6	2	41	1.43
12962708--12963428	181	4.1	180	75	7	451	42	9	7	41	1.65
12963504--12963803	159	1.9	161	86	2	435	41	7	8	43	1.62
12963665--12965523	181	10.5	179	73	11	1183	41	10	8	39	1.70
12963674--12965523	348	5.2	349	74	11	1020	41	10	8	39	1.70
12964549--12964869	169	1.9	169	83	5	425	42	10	6	40	1.65
12965484--12965566	43	1.9	43	87	0	121	42	10	3	43	1.57
12965588--12965620	15	2.2	16	89	10	52	66	0	0	33	0.92
12965520--12966253	181	4.1	180	78	7	675	41	8	7	42	1.65
12973769--12973793	11	2.3	11	100	0	50	0	52	0	48	1.00
12973993--12974032	15	2.6	16	84	7	57	62	25	0	12	1.30
12976569--12976607	20	2.1	18	85	9	51	58	10	5	25	1.51
12979602--12980372	180	4.3	180	80	6	771	43	9	7	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12981080--12981112	17	2.0	17	88	5	50	42	12	0	45	1.41
12980735--12981564	180	4.7	173	75	10	539	41	10	8	39	1.69
12981087--12981505	181	2.3	180	82	2	473	39	10	9	40	1.72
12981566--12999259	181	98.2	179	70	12	6104	41	10	8	40	1.69
12983751--12983786	17	2.1	17	90	10	56	55	8	0	36	1.30
12981567--12999497	539	33.2	538	71	12	7174	41	10	8	39	1.69
12988450--12988497	17	2.7	18	78	12	55	41	12	2	43	1.54
12990578--12990638	31	1.9	31	83	9	79	42	16	4	36	1.70
12990628--12991148	184	2.9	176	78	7	519	43	11	7	38	1.69
12994067--12994113	24	1.9	25	82	4	60	51	4	4	40	1.41
12991243--12999004	542	14.4	528	72	11	2796	42	9	8	40	1.68
12994690--12997649	714	4.1	706	76	9	1883	42	10	7	39	1.68
12991237--12999187	360	22.2	354	72	11	2565	42	9	8	40	1.68
12997392--12998368	361	2.7	362	77	6	834	41	9	8	40	1.67
12998199--12998562	201	1.8	202	80	4	448	43	8	7	40	1.62
12998367--12999186	175	4.6	174	78	7	719	42	8	7	41	1.64
12997842--12998925	557	1.9	560	80	5	1239	42	8	7	41	1.65
12999835--13004483	181	26.1	180	74	9	2872	39	7	9	42	1.67
13000589--13000625	18	2.0	19	89	5	58	37	5	5	51	1.48
12999937--13004488	522	8.5	518	73	11	1975	39	7	9	42	1.67
13002043--13004483	361	6.8	358	74	8	1697	39	7	10	42	1.68
13004420--13004550	67	2.0	67	84	0	172	41	5	16	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13004553--13005209	182	3.7	178	78	9	651	37	8	10	43	1.69
13005435--13012215	181	38.3	178	69	13	2319	41	9	8	40	1.68
13005426--13006477	177	5.9	178	74	8	529	41	11	7	39	1.70
13005385--13009411	535	7.6	534	73	11	1405	41	10	7	40	1.68
13006504--13012215	362	16.1	360	72	11	3045	41	9	8	40	1.68
13009834--13011733	532	3.5	531	76	8	1586	41	9	8	39	1.69
13009591--13012215	363	7.3	360	74	9	1841	41	9	8	40	1.68
13011713--13011748	18	2.0	18	88	0	54	38	8	8	44	1.65
13011755--13012081	178	1.8	177	82	3	417	43	7	8	39	1.65
13012255--13012592	181	1.9	182	80	8	411	37	5	11	44	1.65
13012633--13013091	182	2.5	181	79	4	530	40	9	8	41	1.68
13013109--13013751	181	3.6	178	75	8	560	38	9	8	43	1.69
13013655--13013859	110	1.9	110	84	4	279	34	11	7	46	1.68
13013872--13014189	169	1.9	169	86	3	462	44	10	7	38	1.67
13014020--13015322	180	7.3	181	75	10	770	42	10	7	38	1.68
13014020--13016780	181	15.4	181	75	7	2045	41	10	8	40	1.68
13014784--13018965	362	11.7	360	72	11	2031	41	10	8	39	1.70
13016741--13016770	15	2.0	15	93	0	51	60	0	3	36	1.14
13017230--13017976	180	4.2	172	73	10	470	41	10	9	38	1.71
13017230--13017976	353	2.1	353	82	6	877	41	10	9	38	1.71
13018005--13018965	181	5.3	179	77	5	801	41	9	9	39	1.70
13023776--13024238	181	2.6	179	77	6	461	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13024418--13025081	361	1.8	361	80	4	784	42	9	9	39	1.69
13024793--13025203	174	2.3	175	78	7	413	44	9	8	38	1.67
13024292--13027857	181	19.8	181	76	7	2533	41	9	7	40	1.67
13024321--13027857	542	6.6	533	77	7	2610	41	9	7	40	1.67
13028379--13044865	181	91.8	179	73	9	8617	41	9	8	39	1.69
13031705--13031764	17	3.5	17	69	0	57	50	5	3	41	1.41
13031701--13031768	34	2.0	34	100	0	136	44	5	5	44	1.52
13035321--13035623	166	1.8	162	81	7	378	43	8	8	39	1.67
13036891--13036931	19	2.0	21	86	9	59	31	14	9	43	1.78
13038502--13044865	361	17.8	361	74	8	3445	41	9	8	40	1.68
13044921--13045742	181	4.6	178	76	8	659	42	8	8	39	1.67
13046833--13047905	182	6.0	182	75	9	809	42	9	8	39	1.68
13046830--13047517	363	1.9	362	80	6	795	43	9	8	39	1.67
13047449--13047886	169	2.5	170	78	10	460	42	8	8	39	1.66
13047709--13047742	17	2.1	17	88	5	52	38	11	0	50	1.39
13047995--13049439	177	8.2	174	73	10	690	42	10	7	39	1.68
13047682--13048298	329	1.9	327	81	6	764	40	10	8	40	1.71
13048554--13048586	16	2.0	17	94	5	59	39	12	6	42	1.67
13048806--13049398	180	3.3	181	76	6	433	42	10	7	39	1.67
13049443--13052147	181	15.1	181	75	8	1840	41	9	8	40	1.67
13051759--13052081	170	1.9	167	86	5	452	42	10	6	40	1.64
13052172--13052585	182	2.3	177	80	7	435	39	8	9	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13053444--13054900	177	8.2	180	73	11	516	39	7	10	42	1.68
13053444--13078067	541	45.9	526	73	11	6561	39	8	10	41	1.68
13053449--13077867	721	34.2	710	72	11	2016	40	8	9	41	1.68
13053450--13072277	181	104.9	180	73	9	9981	39	8	10	42	1.68
13057627--13057962	170	2.0	170	82	5	419	37	8	8	44	1.67
13056226--13078222	361	61.5	356	73	9	10489	39	8	10	41	1.68
13056290--13072266	180	88.8	180	72	11	3837	39	8	10	42	1.68
13060472--13060544	34	2.1	34	92	0	119	50	6	8	34	1.59
13060528--13078222	361	49.5	360	74	9	11331	39	8	10	41	1.68
13063375--13063413	19	1.9	20	85	15	53	38	10	15	35	1.81
13066791--13066829	19	1.9	20	85	15	53	38	10	15	35	1.81
13070207--13070245	19	1.9	20	85	15	53	38	10	15	35	1.81
13072644--13072963	158	2.0	158	88	0	469	42	8	10	38	1.70
13074137--13074185	18	2.8	18	78	15	57	42	6	10	40	1.63
13073124--13078222	181	28.6	176	73	10	2538	40	8	9	41	1.68
13076381--13076700	164	2.0	164	80	5	369	41	7	9	41	1.65
13079721--13079807	37	2.4	37	90	1	140	45	20	2	31	1.63
13083235--13083371	73	1.9	73	82	11	174	29	20	17	32	1.95
13083880--13083920	7	6.1	7	91	5	50	24	0	4	70	1.06
13083876--13083961	38	2.2	40	84	12	108	23	1	4	70	1.12
13083876--13083964	43	2.1	43	84	16	114	23	1	4	70	1.12
13083939--13084140	28	7.4	28	69	20	81	33	2	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13083900--13084156	35	7.2	36	71	19	91	31	3	1	63	1.21
13083939--13084117	42	4.5	39	72	15	102	33	2	1	62	1.17
13083945--13084117	77	2.2	77	80	8	174	33	2	1	62	1.18
13084009--13084172	42	4.2	40	81	15	143	34	3	1	60	1.22
13083907--13084144	4	56.8	4	65	21	62	31	2	1	63	1.19
13084119--13084198	41	2.0	39	83	9	99	27	8	1	62	1.32
13085063--13085095	6	5.8	6	92	7	52	15	0	0	84	0.61
13085107--13085332	58	3.9	58	78	6	226	42	7	14	35	1.74
13085119--13085332	59	3.7	58	81	9	242	41	7	15	35	1.74
13085099--13085333	117	2.0	114	84	5	303	40	7	14	37	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125