genome.fa.s46.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  52  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10425322--10425522	103	2.0	101	79	6	217	30	9	20	39	1.84
10424941--10425529	97	6.0	97	76	9	380	28	12	22	37	1.90
10425640--10425691	20	2.7	19	84	3	68	67	7	3	21	1.32
10426092--10426143	20	2.5	20	87	3	68	65	3	17	13	1.41
10426874--10427252	210	1.8	209	82	9	493	41	6	14	36	1.72
10429127--10429173	16	3.1	15	80	17	53	82	4	8	4	0.91
10435761--10435793	17	1.9	17	93	0	57	27	6	15	51	1.66
10437852--10437890	16	2.4	16	88	12	62	28	2	0	69	1.02
10438578--10438629	5	11.0	5	78	12	56	53	0	0	46	1.00
10438578--10438641	14	4.6	14	73	7	58	53	0	0	46	1.00
10438578--10438641	19	3.4	19	78	8	69	53	0	0	46	1.00
10438702--10438735	16	2.1	17	88	5	52	50	0	2	47	1.16
10440914--10440984	2	35.5	2	88	0	70	46	7	4	42	1.50
10447442--10447485	23	1.9	23	90	0	70	56	2	0	40	1.11
10452258--10452295	19	2.0	19	90	10	60	52	2	0	44	1.14
10452370--10452418	22	2.1	22	85	7	62	26	2	8	63	1.34
10456758--10456808	24	2.1	24	85	0	66	25	29	23	21	1.99
10456884--10457191	85	3.6	84	77	4	278	39	19	13	26	1.89
10457310--10457573	85	3.1	84	79	4	226	40	16	15	27	1.88
10457069--10457488	231	1.8	230	80	4	506	41	17	13	27	1.87
10457660--10457764	38	2.8	38	77	0	111	31	22	20	24	1.98
10457660--10457719	19	3.2	19	82	0	84	31	18	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10457669--10457764	19	5.1	19	75	0	66	33	23	19	22	1.97
10457832--10457876	19	2.4	18	82	7	54	42	22	15	20	1.89
10457868--10457990	56	2.2	57	79	5	135	34	22	15	27	1.94
10457979--10458038	19	3.2	18	79	9	66	35	30	16	18	1.93
10458380--10458419	19	2.1	19	85	0	53	45	20	15	20	1.86
10460568--10460611	14	2.8	16	83	10	56	31	0	0	68	0.90
10461302--10461374	20	3.7	20	92	0	92	31	8	9	50	1.64
10461313--10461374	20	3.1	20	95	0	106	29	9	9	51	1.66
10461384--10461654	20	13.4	21	70	15	180	29	5	13	51	1.64
10461384--10461654	41	6.7	40	83	8	336	29	5	13	51	1.64
10461663--10461724	32	1.9	32	87	6	90	30	1	12	54	1.48
10461707--10461767	19	3.3	18	75	13	61	31	3	9	55	1.48
10469587--10470250	117	5.6	113	90	6	793	33	12	7	46	1.71
10469549--10470248	57	11.7	57	87	8	945	33	13	7	45	1.72
10469549--10470248	174	3.9	174	90	5	1014	33	13	7	45	1.72
10470330--10470387	8	8.4	7	83	12	52	84	3	1	10	0.81
10470711--10470756	20	2.3	20	77	3	58	26	19	26	28	1.99
10470876--10470923	25	1.9	25	83	8	62	43	18	6	31	1.75
10471643--10471731	7	12.7	7	77	10	51	7	0	6	85	0.75
10471671--10471731	1	61.0	1	80	0	68	1	0	8	90	0.53
10471642--10471732	26	3.6	24	78	18	78	8	0	7	83	0.81
10471649--10471729	31	2.6	32	80	9	87	7	0	7	85	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10471740--10472148	41	9.9	41	86	7	505	37	22	16	23	1.93
10471740--10472142	124	3.3	123	85	7	507	37	22	16	23	1.94
10473167--10473247	8	10.2	8	82	7	103	9	14	0	75	1.05
10473180--10473246	15	4.3	16	86	5	93	10	13	0	76	1.03
10473171--10473248	23	3.3	23	83	5	104	8	14	0	76	1.00
10473189--10473246	7	7.7	7	83	11	62	10	12	0	77	0.99
10475805--10476522	57	11.7	57	80	13	726	33	13	8	44	1.74
10475816--10476522	123	5.7	123	79	15	640	33	13	8	44	1.74
10475805--10476529	187	3.9	178	83	12	850	33	13	8	44	1.74
10476609--10476657	19	2.7	18	78	12	55	81	4	2	12	0.91
10476974--10477019	20	2.3	20	92	3	76	23	21	28	26	1.99
10477071--10477142	31	2.3	32	76	9	78	27	19	26	26	1.99
10477151--10477198	25	1.9	25	83	8	62	43	18	6	31	1.75
10478596--10478620	13	1.9	13	100	0	50	24	24	12	40	1.88
10478793--10479190	42	9.4	43	79	3	360	30	10	18	41	1.84
10478793--10479189	85	4.7	85	76	8	346	29	10	18	41	1.84
10480126--10480188	32	1.9	33	87	3	92	33	1	9	55	1.42
10480279--10480544	20	13.2	21	71	17	163	29	5	12	52	1.62
10480254--10480432	41	4.4	41	86	7	249	30	5	12	51	1.60
10480279--10480451	41	4.3	40	86	6	217	30	5	11	52	1.59
10480417--10480460	18	2.3	19	88	7	63	31	6	9	52	1.59
10480337--10480532	98	2.0	99	85	6	263	30	6	11	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10480435--10480544	41	2.7	41	88	0	175	28	6	13	51	1.65
10480510--10480607	32	3.1	31	79	4	99	27	3	13	56	1.52
10480595--10480646	17	2.8	19	77	14	54	30	7	7	53	1.57
10480777--10480831	29	2.0	28	82	13	69	34	9	10	45	1.71
10491250--10491383	72	1.9	72	87	3	198	47	7	19	26	1.76
10498636--10498884	128	2.0	127	91	2	401	34	13	19	32	1.91
10502051--10502086	12	3.0	12	87	0	54	58	0	0	41	0.98
10503202--10503242	22	1.9	22	85	5	57	46	2	0	51	1.14
10503686--10503734	15	3.1	17	71	17	50	38	0	2	59	1.09
10517538--10517695	51	3.0	52	72	12	142	37	17	3	41	1.66
10519155--10519242	16	5.5	15	74	15	68	71	2	1	25	1.04
10519161--10519242	9	9.8	9	69	15	50	71	2	1	24	1.05
10524694--10524836	49	2.9	48	84	3	178	34	13	15	36	1.87
10524871--10525038	46	3.7	46	79	7	150	39	13	9	37	1.78
10525795--10525819	13	1.9	13	100	0	50	64	0	0	36	0.94
10525758--10525855	34	2.9	34	75	7	92	67	2	1	29	1.09
10525805--10525855	25	2.1	24	88	3	75	70	0	1	27	0.98
10525804--10525855	9	6.0	9	75	8	54	69	0	1	28	0.99
10525794--10525867	24	3.3	20	78	14	58	67	0	2	29	1.04
10527109--10527172	25	2.5	27	78	19	66	43	15	1	39	1.56
10527157--10527221	34	1.9	34	84	3	87	41	12	3	43	1.58
10528142--10528219	6	13.0	6	84	0	84	25	1	6	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10529207--10529395	103	1.8	103	89	0	297	43	10	10	35	1.73
10532468--10533201	374	2.0	373	90	0	1153	35	16	16	31	1.91
10533815--10533864	17	2.9	17	80	8	57	86	4	8	2	0.78
10535266--10535453	43	4.2	44	74	9	132	34	9	15	39	1.81
10535647--10535700	17	3.1	17	73	5	54	40	14	9	35	1.78
10535625--10535705	35	2.4	34	85	2	108	34	16	9	39	1.81
10535741--10535957	18	12.4	18	71	8	126	34	13	8	43	1.74
10535790--10535972	35	5.2	35	76	5	152	34	14	7	44	1.72
10535741--10535998	35	7.4	36	74	7	124	35	13	8	42	1.75
10535846--10535998	54	2.9	53	81	3	157	35	15	7	41	1.75
10535860--10535972	18	6.3	18	75	5	95	36	15	5	43	1.69
10536423--10536494	6	12.0	6	77	5	65	27	0	6	65	1.18
10536450--10536492	11	3.8	11	84	6	50	25	0	6	67	1.15
10536437--10536496	23	2.5	24	81	5	77	25	0	8	66	1.19
10537205--10537299	45	2.1	44	82	1	109	26	24	22	27	2.00
10537547--10537744	103	1.9	102	86	3	281	44	9	10	35	1.72
10540611--10540670	20	3.0	20	78	11	70	53	13	6	26	1.64
10541154--10541189	10	3.6	10	88	0	54	36	0	16	47	1.47
10541161--10541192	5	6.4	5	92	0	55	34	0	18	46	1.49
10541815--10541847	16	1.9	18	88	11	52	75	0	9	15	1.03
10546234--10546271	20	1.9	20	89	10	60	2	18	0	78	0.86
10556939--10556985	23	2.0	23	100	0	94	42	12	8	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10561132--10561165	2	17.0	2	100	0	68	50	0	0	50	1.00
10561266--10561298	17	1.9	17	93	0	57	57	12	0	30	1.35
10564036--10564064	13	2.1	14	93	6	51	55	0	3	41	1.17
10571277--10571310	16	2.2	15	89	5	50	41	0	0	58	0.98
10573897--10573925	15	2.0	15	93	6	51	55	0	0	44	0.99
10573909--10573946	19	2.0	19	94	0	67	39	0	0	60	0.97
10573877--10573948	9	7.9	9	75	16	51	47	1	0	51	1.09
10573910--10573953	19	2.3	19	88	4	61	45	0	0	54	0.99
10574981--10575050	34	2.1	34	83	5	88	37	1	5	55	1.32
10575077--10575174	34	2.9	33	73	1	88	43	11	8	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125