genome.fa.s46.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  4  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525748--525790	10	4.5	10	85	11	63	9	2	0	88	0.60
525748--525790	18	2.4	18	96	0	77	9	2	0	88	0.60
528029--528082	21	2.7	18	81	16	54	35	5	9	50	1.58
532726--532764	19	2.0	20	90	5	62	30	10	0	58	1.31
532864--532901	13	2.7	15	80	19	55	65	0	5	28	1.14
534590--534614	12	2.1	12	100	0	50	36	0	0	64	0.94
538762--538797	17	2.1	17	89	0	54	36	8	44	11	1.70
551921--551975	22	2.5	23	76	8	60	49	3	10	36	1.56
552085--552251	22	7.6	22	79	2	138	51	5	7	35	1.54
552095--552243	11	13.5	11	67	2	75	52	5	6	36	1.49
552074--552242	66	2.5	66	81	2	178	52	5	7	34	1.53
552100--552265	66	2.5	66	81	1	172	50	4	7	37	1.53
552074--552295	44	5.0	43	75	7	149	50	5	8	36	1.56
552556--552669	43	2.8	41	79	11	117	52	3	8	35	1.50
552620--552656	17	2.2	17	90	0	56	54	0	10	35	1.36
552684--552740	23	2.5	22	77	5	60	47	5	8	38	1.57
552537--553329	22	36.0	22	68	12	117	46	6	10	36	1.65
552931--553264	66	4.9	66	74	11	223	46	7	9	36	1.63
553072--553331	44	5.9	44	75	8	215	45	8	10	36	1.68
553578--553617	21	1.9	21	85	10	55	47	10	7	35	1.65
554700--554773	34	2.2	34	87	0	112	43	10	13	32	1.79
554702--554790	34	2.6	34	83	0	97	42	10	12	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554876--554942	34	2.0	34	87	0	98	47	11	4	35	1.61
557821--557869	17	2.8	18	78	12	57	26	2	10	61	1.39
557998--558044	17	2.6	18	86	6	69	53	6	6	34	1.52
565094--565134	21	2.0	21	90	0	64	34	0	51	14	1.43
568229--568266	20	1.9	20	100	0	76	44	5	31	18	1.72
570977--571006	9	3.2	9	90	9	51	20	10	0	70	1.16
570977--571006	10	3.1	10	95	4	53	20	10	0	70	1.16
575471--575547	29	2.7	29	81	0	82	22	9	14	54	1.67
575483--575535	19	2.8	19	77	5	54	22	9	13	54	1.67
575564--575593	15	2.1	14	93	6	51	23	6	20	50	1.71
576666--576692	5	5.4	5	100	0	54	81	0	0	18	0.69
577187--577212	6	4.3	6	100	0	52	84	0	0	15	0.62
577512--577632	43	2.8	43	84	1	154	46	14	11	27	1.79
577615--577648	15	2.3	15	94	0	59	61	8	0	29	1.26
577572--577689	58	2.0	58	90	3	184	50	11	8	29	1.67
577630--577815	43	4.3	43	79	4	160	45	12	11	29	1.78
577537--577730	101	1.9	102	84	3	257	47	12	10	29	1.75
577718--577795	41	1.9	41	91	0	129	43	14	12	29	1.82
577630--577815	85	2.2	85	78	3	194	45	12	11	29	1.78
578168--578208	17	2.3	18	87	4	57	39	4	12	43	1.63
578316--578360	18	2.5	18	96	0	81	53	6	6	33	1.53
578474--578536	17	3.7	17	78	0	63	42	12	11	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578657--578794	65	2.1	66	81	10	167	39	16	8	34	1.80
585611--585672	30	2.0	31	87	9	92	22	3	3	70	1.16
590458--590486	10	3.0	10	95	5	51	37	0	0	62	0.96
591313--591381	33	2.1	34	81	13	81	15	1	23	59	1.45
591351--591404	27	2.0	27	85	7	74	18	1	20	59	1.47
591451--591526	27	2.7	28	78	13	84	14	0	17	68	1.21
591480--591519	20	2.0	20	95	5	71	17	0	17	65	1.28
593512--593550	19	2.1	19	100	0	78	28	25	25	20	1.99
595176--595221	23	2.0	23	100	0	92	43	13	13	30	1.81
607280--607322	3	14.7	3	95	4	79	65	0	0	34	0.93
607283--607322	20	2.0	20	100	0	80	65	0	0	35	0.93
608010--608166	52	3.0	52	85	3	174	42	8	23	24	1.83
614339--614374	19	1.9	19	94	5	65	22	19	13	44	1.86
614724--614771	6	7.8	6	88	2	69	16	0	4	79	0.89
615154--615194	19	2.1	20	86	4	57	65	2	4	26	1.25
627533--627584	20	2.5	21	71	9	52	69	3	0	26	1.06
627831--627927	48	2.0	48	93	0	167	17	13	18	50	1.78
628971--629301	48	6.8	49	76	5	260	37	17	13	31	1.89
629120--629301	100	1.8	100	83	4	244	37	18	12	30	1.88
638804--638834	9	3.4	9	95	0	53	32	35	25	6	1.82
641904--641935	2	16.5	2	93	6	57	50	0	0	50	1.00
644930--644960	11	2.7	11	95	5	53	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645137--645182	19	2.5	18	82	3	56	28	6	0	65	1.17
645582--645607	13	2.0	13	100	0	52	7	23	38	30	1.83
646827--647636	49	16.6	49	78	7	685	35	23	12	28	1.91
646784--647636	194	4.4	194	84	6	934	35	23	12	28	1.91
647635--647876	50	4.9	49	81	6	290	33	21	13	30	1.92
647517--647750	128	1.9	124	86	3	333	32	23	14	29	1.94
647462--647813	177	2.0	173	88	3	526	34	23	13	28	1.93
654443--654488	23	2.0	23	95	0	83	54	4	23	17	1.61
658234--658274	21	1.9	22	90	5	66	12	0	9	78	0.98
658701--658751	21	2.4	22	84	12	63	5	1	9	82	0.91
660065--660090	10	2.6	10	100	0	52	76	7	0	15	0.99
661034--661103	3	23.7	3	91	8	117	70	0	0	30	0.88
666406--667800	529	2.6	518	82	5	1595	40	10	10	39	1.72
669563--669660	50	2.0	50	85	0	133	35	7	10	46	1.65
671497--671526	15	2.0	15	93	0	51	6	10	40	43	1.64
674426--674455	2	15.5	2	93	6	53	50	0	0	50	1.00
675008--675049	9	4.7	9	91	5	59	21	0	9	69	1.17
675008--675061	19	2.9	19	83	10	67	24	0	9	66	1.20
675483--675536	25	2.2	24	83	6	63	35	5	18	40	1.74
675645--675682	20	1.9	20	94	0	67	31	26	18	23	1.97
676026--676075	12	4.1	12	82	10	50	12	2	4	82	0.90
676027--676075	13	3.9	12	81	7	53	12	2	4	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676155--676433	60	4.7	59	93	3	424	44	8	13	34	1.73
676155--676446	118	2.5	118	89	7	434	45	8	12	33	1.72
678853--678900	20	2.4	19	80	10	60	47	4	2	45	1.33
682713--682781	29	2.4	28	81	9	77	47	4	1	46	1.31
682721--682798	29	2.6	29	83	4	93	44	5	2	47	1.38
686076--686119	20	2.2	20	84	8	54	50	0	0	50	1.00
686848--686872	2	12.5	2	100	0	50	52	0	0	48	1.00
687771--687854	10	8.4	10	71	10	55	48	14	1	35	1.51
687783--687849	20	3.3	20	83	4	73	50	16	0	32	1.45
687799--687854	8	7.2	8	82	8	62	50	14	0	35	1.43
687767--687853	12	7.1	12	72	5	75	49	14	1	34	1.52
687785--687853	22	3.0	22	78	8	75	50	15	0	33	1.45
687773--687854	38	2.1	40	86	4	114	48	14	1	35	1.52
689333--689474	74	1.9	74	95	0	257	39	9	8	42	1.67
696938--696996	18	3.2	18	74	11	50	50	10	5	33	1.58
697012--697054	20	2.2	20	83	8	52	53	13	9	23	1.69
697219--697275	24	2.3	25	76	11	64	59	7	0	33	1.24
697206--697277	32	2.2	32	82	0	81	59	5	0	34	1.21
697222--697295	21	3.4	22	80	10	71	56	8	1	33	1.37
697262--697301	21	2.0	20	95	5	71	55	7	5	32	1.50
697389--697436	12	4.0	12	77	0	51	58	12	2	27	1.46
697373--697516	55	2.6	55	85	3	191	56	11	3	28	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697272--697545	32	9.1	31	72	18	161	54	10	5	29	1.58
697540--697587	14	3.2	14	78	16	60	60	4	4	31	1.35
697525--697580	14	3.7	15	75	15	62	55	7	5	32	1.50
697391--697628	85	2.8	88	76	10	244	55	10	4	29	1.53
697532--697595	31	2.1	31	90	0	101	54	10	6	28	1.59
697644--697804	24	7.0	24	75	16	137	54	11	3	30	1.53
697637--697804	71	2.5	65	80	14	189	54	10	4	30	1.54
697727--697774	20	2.3	21	92	3	80	58	12	2	27	1.46
697668--697804	47	2.9	46	81	12	140	54	11	3	29	1.53
697727--697787	21	3.0	20	80	7	59	57	11	1	29	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125