genome.fa.s46.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  90  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17640844--17640934	2	45.5	2	97	0	173	0	1	49	49	1.08
17640934--17640962	2	14.5	2	100	0	58	48	0	0	51	1.00
17641410--17641436	2	13.5	2	100	0	54	48	0	0	51	1.00
17641674--17641698	4	6.2	4	100	0	50	24	28	0	48	1.52
17641700--17641745	2	23.5	2	86	4	67	50	0	4	45	1.21
17641801--17641838	18	2.1	18	100	0	76	50	0	5	44	1.24
17644311--17644383	25	2.8	26	88	10	98	45	2	1	50	1.24
17644351--17644417	33	2.0	34	88	5	100	43	1	1	53	1.19
17644437--17644506	31	2.2	32	84	2	88	40	2	7	50	1.45
17644463--17644526	22	2.9	22	83	2	83	39	4	4	51	1.44
17644466--17644607	10	13.8	10	65	13	56	48	2	4	44	1.36
17644622--17644703	26	3.1	26	81	8	85	46	2	1	50	1.22
17644752--17644784	7	5.0	7	85	14	52	39	0	0	60	0.97
17645663--17645692	13	2.4	13	94	5	53	90	6	3	0	0.56
17648518--17648652	72	1.9	73	84	1	182	45	14	11	27	1.80
17649506--17649532	10	2.7	10	100	0	54	33	51	0	14	1.43
17650596--17650635	21	1.9	21	84	0	53	37	20	7	35	1.81
17659725--17659855	52	2.5	52	88	1	181	37	6	27	28	1.82
17660340--17660409	31	2.3	31	89	0	104	31	24	20	24	1.98
17680169--17680202	17	2.0	17	94	0	59	26	8	11	52	1.67
17684283--17684452	83	2.1	82	84	4	229	55	11	11	21	1.67
17688663--17688743	31	2.6	31	78	5	83	13	24	3	58	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17695364--17695405	18	2.2	19	83	8	50	54	9	4	30	1.53
17695566--17695616	20	2.4	22	75	24	56	62	1	7	27	1.33
17695181--17696137	221	4.3	218	75	8	606	50	7	12	29	1.66
17696416--17696828	218	1.9	209	81	6	488	53	6	9	29	1.59
17697395--17697465	21	3.4	21	73	19	67	56	1	5	36	1.32
17695376--17697635	925	2.4	929	79	6	2337	51	6	11	30	1.63
17697115--17697588	221	2.2	222	79	4	489	52	6	8	31	1.59
17697631--17697670	15	2.6	15	84	4	53	70	2	0	27	1.01
17702208--17702252	22	2.0	23	95	4	83	24	13	0	62	1.31
17702945--17702982	20	1.9	20	89	10	60	60	0	0	39	0.97
17708828--17708868	18	2.3	18	95	0	73	48	4	17	29	1.67
17710245--17710384	47	2.8	50	81	9	155	34	10	19	36	1.85
17713415--17713525	3	33.7	3	69	18	53	28	4	1	64	1.23
17713411--17713537	46	2.8	43	71	23	111	29	4	1	63	1.24
17713415--17713557	17	8.1	17	70	15	76	29	4	2	63	1.26
17713817--17713865	25	2.1	24	85	11	66	22	0	18	59	1.38
17714457--17714522	12	5.4	12	84	8	80	22	3	0	74	0.96
17714533--17714754	60	3.7	60	85	7	301	43	7	13	35	1.72
17718717--17718754	20	1.9	19	94	5	67	73	0	18	7	1.06
17718720--17718787	26	2.6	27	80	13	72	76	0	19	4	0.95
17718713--17718779	20	3.1	23	79	12	63	74	0	19	5	1.02
17718724--17718803	28	2.8	27	74	16	72	75	0	18	6	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17719793--17719838	20	2.3	20	100	0	92	32	15	19	32	1.93
17720219--17720324	43	2.5	42	81	10	124	36	12	16	33	1.87
17720626--17720945	83	3.9	83	79	4	317	24	14	20	40	1.90
17720626--17721106	42	11.4	41	78	7	306	24	14	20	39	1.90
17721321--17721425	3	31.7	3	70	19	50	29	4	1	63	1.25
17721322--17721420	35	2.8	35	76	10	103	30	5	2	62	1.28
17721393--17721476	20	4.1	20	79	13	73	29	5	1	63	1.26
17721321--17721476	23	6.7	23	73	15	108	29	5	1	62	1.29
17722450--17722501	26	2.0	26	100	0	104	42	11	11	34	1.77
17722394--17722561	86	2.0	86	95	1	302	42	10	12	35	1.76
17722351--17722619	145	1.9	144	88	3	416	45	8	13	33	1.72
17722479--17722901	59	7.2	59	87	8	512	43	8	12	35	1.72
17722479--17722903	176	2.4	176	89	5	628	43	8	12	36	1.72
17726104--17726535	69	6.3	69	80	3	449	26	19	14	39	1.90
17726105--17726500	137	2.9	137	81	4	458	26	19	13	39	1.90
17726137--17726551	137	3.0	135	74	7	370	26	19	14	39	1.90
17728005--17728044	19	2.2	17	86	13	53	12	7	5	75	1.18
17729135--17729181	10	5.1	9	78	14	51	23	0	2	74	0.93
17731706--17731745	17	2.4	17	91	0	62	70	0	2	27	1.01
17732180--17732212	9	3.3	10	87	12	50	72	0	3	24	0.98
17732180--17732224	20	2.3	20	85	11	58	75	0	6	17	1.01
17732784--17732826	17	2.6	17	85	3	52	55	2	0	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17736408--17736433	11	2.4	11	100	0	52	50	0	0	50	1.00
17736790--17736815	12	2.2	12	100	0	52	69	0	7	23	1.14
17737870--17738010	60	2.3	60	81	2	167	44	17	18	19	1.87
17737885--17738036	60	2.5	60	78	2	144	45	15	19	20	1.85
17747966--17748021	14	4.2	13	80	11	60	78	1	10	8	1.03
17748968--17749047	27	2.9	26	78	12	81	68	2	6	22	1.24
17748950--17749025	15	5.1	15	69	13	50	69	2	5	22	1.21
17749805--17749866	21	3.0	20	74	6	70	77	3	6	12	1.08
17750811--17750844	17	2.0	17	88	0	50	23	11	29	35	1.90
17751008--17751078	25	2.8	25	89	0	115	12	25	2	59	1.47
17751746--17752042	148	2.0	148	92	2	490	52	5	6	35	1.50
17753434--17753464	9	3.6	9	95	4	55	77	0	0	22	0.77
17753424--17753461	13	3.0	13	85	14	53	76	2	0	21	0.91
17755052--17755129	31	2.5	31	82	0	102	35	14	6	43	1.71
17755152--17755214	31	2.0	31	84	0	81	34	11	9	44	1.73
17755316--17755434	42	2.8	42	90	0	175	39	13	12	34	1.82
17755463--17755519	22	2.5	22	78	10	62	42	15	5	36	1.70
17755489--17755592	45	2.3	45	81	3	120	37	13	8	40	1.75
17756778--17756837	7	7.7	7	80	15	57	11	16	1	70	1.25
17756778--17756838	15	3.9	15	77	12	68	11	16	1	70	1.24
17756754--17756838	8	10.2	8	75	15	75	10	17	1	70	1.21
17761239--17761287	20	2.4	21	93	6	91	73	8	0	18	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17761244--17761297	16	3.2	18	72	27	55	74	11	0	14	1.08
17763957--17763991	18	1.9	18	88	0	52	74	2	2	20	1.08
17764305--17764331	2	13.5	2	100	0	54	48	0	0	51	1.00
17768222--17768283	32	1.9	32	86	0	88	19	6	11	62	1.49
17768496--17768537	8	5.5	8	83	8	52	83	0	0	16	0.65
17768504--17768537	16	2.1	16	94	0	59	85	0	0	14	0.60
17768312--17768683	207	1.8	207	81	5	475	47	8	11	32	1.70
17774954--17775017	21	2.7	23	77	13	60	75	0	18	6	1.01
17776430--17776511	43	1.9	42	87	7	121	37	10	14	36	1.82
17776812--17777263	42	11.0	42	86	6	545	27	15	21	35	1.93
17778211--17778254	17	2.8	16	83	16	56	77	2	0	20	0.88
17781786--17781825	20	1.9	21	85	10	55	37	12	7	42	1.71
17786854--17787110	129	2.0	128	88	2	381	36	13	13	36	1.83
17789873--17789924	26	2.0	26	88	0	77	30	5	19	44	1.74
17790128--17790166	10	4.0	10	86	3	53	33	0	0	66	0.92
17801156--17801225	33	2.1	33	97	0	131	25	24	15	34	1.95
17805981--17806059	37	2.1	36	81	9	88	46	5	2	45	1.38
17806038--17806126	47	1.9	45	82	8	108	47	1	3	48	1.26
17806181--17806240	25	2.4	24	84	13	77	41	3	1	53	1.27
17807206--17807254	13	3.8	13	75	8	55	40	4	0	55	1.19
17807252--17807317	27	2.4	28	79	7	80	39	10	3	46	1.54
17810807--17810993	103	1.8	103	86	0	275	40	18	11	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17813347--17813418	7	10.6	7	79	11	69	45	30	0	23	1.53
17813347--17813552	21	10.2	21	69	17	107	46	31	1	21	1.60
17813360--17813552	7	28.8	6	69	24	65	46	31	1	20	1.60
17813366--17813452	19	4.7	19	73	20	60	45	32	0	21	1.52
17813433--17813504	12	5.7	12	73	9	54	48	31	1	18	1.56
17813347--17813552	14	15.3	14	71	10	110	46	31	1	21	1.60
17814739--17814881	55	2.6	54	74	5	144	28	10	16	44	1.80
17815699--17815824	67	1.9	67	88	0	189	42	12	6	38	1.68
17821990--17823049	529	2.0	529	97	0	1996	38	10	19	31	1.85
17823339--17823559	63	3.6	63	69	15	194	34	14	10	40	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125