genome.fa.s46.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  92  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17986437--17986466	14	2.2	13	94	5	51	90	0	10	0	0.47
17986596--17986630	13	2.6	14	91	8	56	74	0	17	8	1.06
17986599--17986654	25	2.2	25	78	6	60	69	0	21	8	1.15
17987333--17987375	19	2.2	20	84	8	54	55	4	0	39	1.20
17987570--17987611	13	3.7	11	82	14	50	23	7	2	66	1.28
17987580--17987609	13	2.3	13	94	0	51	23	6	3	66	1.30
17989380--17989432	18	2.9	18	81	13	65	16	3	1	77	1.01
17989450--17990006	58	9.7	57	82	5	640	42	7	14	35	1.73
17994778--17994829	10	5.3	10	76	21	56	75	0	15	9	1.05
17994798--17994839	18	2.4	18	85	14	61	83	0	9	7	0.81
17995527--17995661	63	2.1	63	88	0	207	35	8	24	31	1.85
17996304--17996409	43	2.5	42	78	10	115	36	12	16	34	1.86
17996706--17996843	41	3.4	41	88	2	206	23	17	22	36	1.95
17996859--17996894	10	3.6	10	84	0	54	80	2	2	13	0.93
17996811--17997200	97	3.6	106	80	12	442	40	13	15	31	1.85
17998887--17998925	21	1.9	19	85	10	51	66	0	15	17	1.25
18005891--18005924	2	17.0	2	100	0	68	50	0	0	50	1.00
18011341--18011711	124	3.0	124	77	8	308	35	13	15	35	1.87
18011407--18011551	62	2.3	62	76	8	143	32	11	20	36	1.87
18011407--18011711	124	2.5	122	79	6	310	34	13	16	35	1.88
18012595--18012646	17	3.1	18	83	8	56	38	3	0	57	1.17
18012789--18012831	17	2.4	17	84	11	50	9	4	4	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18013464--18013497	17	2.0	17	88	0	50	17	8	0	73	1.08
18013459--18013507	25	2.0	25	84	8	64	18	10	0	71	1.13
18013614--18013657	17	2.7	15	83	13	52	2	15	2	79	0.93
18013613--18013657	18	2.6	16	80	13	54	2	15	2	80	0.92
18013593--18013642	26	1.9	26	84	8	66	6	14	2	78	1.03
18016928--18016966	21	1.9	20	85	15	53	41	0	7	51	1.31
18017546--18017577	14	2.3	14	94	0	55	87	0	12	0	0.54
18019284--18019321	20	1.9	20	84	10	51	57	7	0	34	1.28
18019345--18019419	36	2.1	36	82	7	91	58	4	1	36	1.25
18019378--18019430	25	2.1	25	82	10	63	52	7	3	35	1.48
18019699--18019734	16	2.2	16	90	5	54	19	5	2	72	1.17
18019693--18019735	16	2.6	16	82	10	52	27	4	2	65	1.25
18019711--18019831	57	2.1	57	79	10	131	33	2	4	59	1.32
18019789--18019832	22	2.2	19	88	12	61	31	0	4	63	1.14
18019983--18020009	9	3.0	9	100	0	54	44	0	0	55	0.99
18026418--18026490	36	2.0	36	89	0	110	45	10	4	39	1.59
18031453--18031477	7	3.6	7	100	0	50	24	0	0	76	0.80
18032231--18032283	21	2.5	22	81	3	63	50	0	5	43	1.25
18032326--18032360	5	6.6	5	87	12	52	25	0	0	74	0.82
18032390--18032422	2	17.0	2	87	6	50	48	3	0	48	1.17
18035798--18035831	9	3.7	9	92	4	50	14	8	2	73	1.19
18036277--18036343	31	2.2	31	84	10	84	11	4	5	77	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18036490--18036537	22	2.2	22	88	7	71	22	16	29	31	1.96
18037022--18037087	23	2.8	24	77	6	73	31	19	18	30	1.96
18037106--18037200	32	3.0	32	75	3	93	25	16	26	31	1.97
18037393--18037442	21	2.4	21	79	0	64	6	10	2	82	0.92
18039215--18039500	149	1.9	149	79	7	321	21	17	9	51	1.73
18040563--18040595	17	1.9	17	88	11	50	3	18	0	78	0.87
18041291--18041321	15	2.1	15	93	0	53	35	0	35	29	1.58
18046940--18046987	18	2.6	18	78	15	53	33	0	0	66	0.92
18046940--18046982	17	2.4	17	84	7	50	32	0	0	67	0.91
18070419--18070443	8	3.1	8	100	0	50	76	0	0	24	0.80
18072492--18072563	28	2.6	27	82	4	99	54	0	1	44	1.08
18080091--18080986	333	2.7	330	86	2	1206	36	13	12	37	1.83
18081800--18081861	25	2.5	25	89	0	79	24	6	35	33	1.81
18081800--18081853	25	2.2	25	93	0	90	25	7	35	31	1.84
18087293--18087497	61	3.4	61	78	6	161	40	3	16	39	1.65
18087380--18087434	26	2.2	26	83	9	69	40	1	18	40	1.61
18088228--18088367	61	2.3	63	80	10	164	36	5	18	40	1.73
18088877--18088923	21	2.1	22	84	11	60	55	0	0	44	0.99
18089078--18089246	60	2.8	60	79	8	166	46	2	9	41	1.51
18089260--18089546	130	2.2	130	80	4	303	46	3	12	37	1.58
18091015--18091075	28	2.1	29	82	8	72	52	3	3	40	1.34
18091173--18091210	17	2.2	18	85	4	51	52	7	5	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18091628--18091815	9	20.7	9	64	20	54	31	2	3	62	1.25
18091768--18091815	16	2.8	16	84	9	60	33	0	2	64	1.05
18094276--18094743	149	3.1	153	79	6	497	38	5	13	42	1.67
18096621--18096670	27	1.9	26	84	8	66	60	12	2	26	1.43
18099858--18099920	29	2.1	30	82	8	76	52	3	3	41	1.33
18099896--18099950	28	2.0	28	85	0	74	56	1	1	40	1.21
18099883--18099947	28	2.4	26	77	7	67	53	3	3	40	1.32
18100021--18100058	17	2.2	18	85	4	51	52	7	5	34	1.53
18100473--18100508	17	2.2	16	95	5	63	19	0	0	80	0.71
18100608--18100657	19	2.7	19	78	3	57	32	0	2	66	1.03
18100599--18100666	16	3.9	16	75	19	64	33	1	1	63	1.13
18100536--18100666	10	14.4	9	66	21	60	32	2	3	61	1.23
18101304--18101336	12	2.8	12	100	0	66	33	42	9	15	1.78
18103141--18103612	149	3.1	149	77	8	490	37	5	13	43	1.68
18105482--18105531	27	1.9	26	84	8	66	60	12	2	26	1.43
18105891--18105946	25	2.2	26	84	12	71	33	1	19	44	1.61
18106568--18106611	22	2.0	22	86	4	61	54	2	0	43	1.12
18108277--18108350	20	3.8	20	69	3	60	63	5	1	29	1.25
18108325--18108417	28	3.4	27	70	18	68	61	6	1	31	1.28
18108374--18108451	38	2.1	36	86	9	104	58	6	0	34	1.23
18108509--18108547	17	2.2	17	86	4	51	28	0	0	71	0.86
18108745--18108787	18	2.3	18	81	18	52	32	2	6	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18108811--18108853	18	2.3	18	84	11	52	30	6	2	60	1.35
18108880--18108934	20	2.7	21	80	8	60	32	5	5	56	1.45
18108919--18108962	18	2.4	18	80	0	52	36	0	4	59	1.18
18108974--18109015	19	2.3	19	87	4	59	35	4	2	57	1.33
18109002--18109049	20	2.5	20	83	12	64	31	0	6	62	1.20
18109876--18109936	20	3.2	20	73	17	58	27	4	0	67	1.11
18109884--18109916	17	1.9	17	88	11	50	21	6	0	72	1.05
18109874--18109917	18	2.3	19	80	7	54	22	6	0	70	1.11
18110016--18110085	27	2.5	26	82	17	72	24	4	7	64	1.37
18110172--18110221	19	2.6	19	83	0	64	30	4	6	60	1.39
18111840--18111872	2	16.5	2	93	0	57	48	0	0	51	1.00
18123525--18123574	21	2.4	21	80	9	59	30	16	26	28	1.96
18127548--18127605	3	19.3	3	100	0	116	67	0	0	32	0.91
18129228--18129267	15	2.6	16	84	11	57	7	20	15	57	1.61
18136127--18136172	19	2.2	20	85	11	58	52	6	0	41	1.27
18136292--18136332	21	2.0	21	90	0	64	41	4	7	46	1.53
18138527--18138551	6	4.2	6	100	0	50	16	0	0	84	0.63
18138542--18138613	27	2.5	27	77	20	67	26	2	1	69	1.10
18138536--18138674	33	4.2	31	77	10	109	23	5	2	69	1.20
18138526--18138662	16	8.7	15	70	17	59	22	5	2	70	1.18
18138619--18138686	17	3.9	18	78	17	74	22	7	2	67	1.29
18138647--18138694	22	2.2	21	82	10	53	25	6	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18141174--18141421	80	3.1	80	81	7	294	39	9	7	43	1.64
18141845--18141921	37	2.1	37	87	2	111	32	5	6	55	1.47
18149882--18149924	19	2.2	19	83	8	50	76	6	0	16	0.99
18151981--18152058	29	2.6	29	77	4	84	48	7	7	35	1.61
18152950--18153018	34	2.1	33	83	5	86	42	5	11	40	1.65
18153025--18153127	34	3.2	34	66	20	103	49	1	9	38	1.47
18153015--18153138	62	2.0	62	98	0	239	50	2	9	37	1.49
18157901--18157943	15	3.2	15	69	30	51	48	0	0	51	1.00
18157886--18157951	25	2.6	24	90	9	105	50	1	0	48	1.10
18157910--18157964	16	3.3	16	79	5	56	52	1	0	45	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125