genome.fa.s46.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  75  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15067180--15067656	64	7.9	61	74	13	258	35	11	6	46	1.66
15067691--15067739	22	2.2	22	81	3	53	55	2	4	38	1.31
15085376--15085454	34	2.3	34	84	4	97	20	12	10	56	1.64
15096333--15096368	8	4.6	8	89	3	56	88	0	11	0	0.50
15096404--15096437	13	2.8	12	86	8	50	88	2	8	0	0.62
15100025--15100063	21	1.9	19	90	10	60	25	5	7	61	1.44
15100499--15100538	21	1.9	21	89	0	62	22	10	17	50	1.76
15100851--15100984	34	4.0	34	73	9	112	14	15	16	52	1.74
15101693--15101741	8	6.0	8	83	11	55	79	2	2	16	0.92
15101693--15101741	15	3.1	15	85	8	62	79	2	2	16	0.92
15102230--15102275	22	2.1	22	84	8	58	54	4	4	36	1.40
15103124--15103487	188	2.0	184	81	8	434	46	9	7	36	1.65
15106828--15106873	23	2.0	24	82	4	58	56	8	8	26	1.58
15107770--15107807	2	19.0	2	100	0	76	50	0	0	50	1.00
15107587--15108011	220	1.9	220	93	0	724	41	11	12	34	1.79
15124414--15124444	16	1.9	16	93	0	53	54	16	0	29	1.42
15126416--15126476	3	20.3	3	100	0	122	32	0	0	67	0.91
15126542--15126581	21	1.9	21	89	0	62	35	2	12	50	1.54
15126602--15126752	3	51.7	3	70	17	86	35	3	3	56	1.36
15126558--15126747	12	16.8	11	67	20	54	36	3	4	54	1.39
15127585--15127660	5	15.4	5	74	15	52	17	3	1	77	0.99
15127599--15127656	22	2.6	22	74	15	57	20	1	1	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15134304--15134543	115	2.1	114	79	5	252	25	23	11	39	1.88
15135089--15135138	21	2.5	20	86	3	64	44	2	6	48	1.39
15135108--15135154	13	3.5	13	86	11	67	46	0	4	48	1.21
15135149--15135308	3	54.7	3	66	14	57	34	4	5	55	1.43
15136156--15136251	5	18.4	5	71	19	63	18	7	2	71	1.19
15136174--15136215	9	4.7	9	88	5	59	23	2	0	73	0.94
15136176--15136266	14	6.5	14	69	23	59	17	4	4	73	1.16
15138669--15138755	17	5.6	17	68	22	57	26	1	8	64	1.28
15138682--15138776	43	2.2	43	98	0	181	27	2	8	62	1.36
15139370--15139413	22	2.0	22	95	0	79	31	11	13	43	1.80
15139604--15139657	25	2.2	24	83	6	72	18	25	14	40	1.89
15143297--15143339	22	2.0	22	95	0	77	32	11	11	44	1.77
15162067--15162099	13	2.5	13	86	13	50	36	9	0	54	1.32
15162762--15162798	16	2.3	16	95	0	65	29	21	5	43	1.75
15172733--15172962	115	2.0	115	98	0	442	47	16	12	23	1.81
15201419--15201590	7	27.1	7	66	19	74	14	1	36	47	1.55
15201424--15201588	12	14.2	12	63	22	66	14	1	36	47	1.55
15201419--15201516	19	4.9	19	76	11	97	14	1	35	48	1.50
15201419--15201523	31	3.3	32	79	12	117	15	0	35	48	1.51
15201486--15201543	27	2.2	26	87	3	80	18	3	32	44	1.67
15201520--15201562	20	2.2	20	86	0	59	13	2	34	48	1.56
15210989--15211037	24	2.0	24	84	7	64	46	16	0	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15231844--15231887	10	4.3	10	82	2	52	36	18	2	43	1.63
15234577--15234611	14	2.4	15	85	9	54	0	17	2	80	0.84
15248358--15248584	112	2.0	113	93	1	393	39	10	24	25	1.87
15258016--15258471	59	7.7	59	87	3	632	35	13	7	43	1.73
15258104--15258146	16	2.6	17	77	7	52	44	0	9	46	1.35
15258356--15258452	32	3.2	32	64	24	91	35	14	9	41	1.78
15258497--15258556	5	11.4	5	75	16	50	78	3	6	11	1.06
15258580--15258619	4	9.8	4	83	5	53	77	2	0	20	0.88
15259133--15259157	10	2.5	10	100	0	50	60	24	0	16	1.36
15259565--15259688	6	22.0	5	76	19	63	75	2	2	20	1.04
15259609--15259701	29	3.3	27	79	18	100	78	1	3	17	0.94
15259619--15259701	11	7.4	10	80	18	60	78	1	3	16	0.96
15259876--15259901	12	2.2	12	100	0	52	0	0	7	92	0.39
15259909--15260323	42	9.8	42	87	3	521	35	23	18	22	1.96
15259990--15260325	42	8.0	42	91	0	539	34	23	18	23	1.96
15260259--15260395	70	1.9	71	91	1	222	32	21	24	21	1.97
15260328--15260487	41	3.9	42	87	4	245	35	23	18	23	1.95
15260216--15260430	112	1.9	112	93	0	367	33	22	21	22	1.97
15260332--15260489	83	1.9	83	97	0	298	34	22	17	24	1.96
15260132--15260487	195	1.8	196	91	0	597	34	22	19	23	1.96
15264329--15264954	59	10.7	58	85	5	780	34	13	8	44	1.73
15264329--15264953	116	5.3	113	85	7	770	34	13	8	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15264329--15264945	175	3.5	173	89	3	889	34	13	8	43	1.74
15264971--15265031	24	2.5	26	82	15	76	78	3	4	13	1.03
15264996--15265040	17	2.6	17	85	0	54	80	2	6	11	0.99
15266140--15266214	11	6.5	11	79	10	78	76	1	4	18	1.02
15266140--15266214	6	13.0	5	74	22	51	76	1	4	18	1.02
15266140--15266227	23	3.8	23	77	14	83	75	1	6	17	1.08
15269024--15269417	197	2.0	197	98	0	761	28	18	19	34	1.95
15276600--15276627	14	2.0	14	100	0	56	57	7	28	7	1.52
15279857--15279909	21	2.6	21	87	3	72	20	26	20	32	1.98
15280506--15280544	11	3.4	11	80	13	51	35	20	0	43	1.52
15280515--15280555	13	3.3	13	80	13	59	34	21	0	43	1.53
15280506--15280555	24	2.1	24	100	0	100	36	22	0	42	1.54
15280654--15280688	15	2.3	15	90	0	52	48	34	11	5	1.63
15294176--15294301	7	18.6	7	68	9	55	28	1	31	38	1.67
15294162--15294235	33	2.2	33	82	0	94	28	2	32	36	1.71
15294203--15294301	20	4.8	21	75	9	78	29	1	31	38	1.64
15294250--15294346	27	3.6	27	76	5	90	26	1	25	46	1.60
15294250--15294340	13	6.8	13	69	8	67	27	1	25	46	1.60
15296542--15296720	51	3.5	51	78	5	193	42	17	7	32	1.77
15296700--15296741	15	2.7	15	85	10	50	33	14	4	47	1.65
15296909--15296952	19	2.3	19	88	0	61	18	6	15	59	1.58
15297369--15297534	83	2.0	84	83	5	212	21	24	1	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15299264--15299341	37	2.1	38	90	2	122	16	16	12	53	1.72
15308159--15308213	19	2.9	19	78	7	67	25	7	20	47	1.75
15308350--15308486	50	2.7	51	85	5	179	33	7	5	54	1.50
15308350--15308481	25	5.1	25	66	12	79	33	7	5	53	1.52
15308940--15309138	99	2.0	99	95	0	353	31	8	6	53	1.57
15310633--15310680	8	6.4	8	76	13	57	25	0	0	75	0.81
15310638--15310684	14	3.4	13	86	13	67	25	0	0	74	0.82
15310624--15310682	22	2.7	22	80	15	68	27	1	0	71	0.96
15310849--15310889	18	2.2	19	87	12	59	60	24	2	12	1.43
15311774--15311801	13	2.2	13	100	0	56	14	17	14	53	1.73
15312050--15312088	12	3.2	12	92	3	60	0	12	0	87	0.55
15312050--15312097	10	4.7	10	84	5	60	0	14	0	85	0.60
15312050--15312097	21	2.3	21	88	0	69	0	14	0	85	0.60
15312736--15312779	10	4.4	10	82	0	52	13	4	4	77	1.08
15312742--15312778	20	1.9	20	94	5	67	16	2	5	75	1.10
15313743--15313786	20	2.2	20	87	0	61	25	2	22	50	1.61
15313727--15313773	14	3.4	14	76	5	51	23	2	25	48	1.62
15313754--15313795	20	2.1	20	90	0	66	23	2	30	42	1.67
15321811--15321848	10	3.5	11	85	7	51	39	10	5	44	1.61
15321946--15321990	23	2.0	23	90	0	72	28	8	22	40	1.84
15322444--15322489	21	2.3	20	85	7	58	13	13	19	54	1.71
15326086--15326119	17	2.0	17	88	0	50	11	5	11	70	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15326329--15326363	10	3.4	10	88	4	52	37	2	2	57	1.29
15326329--15326368	20	2.0	20	90	9	64	32	2	5	60	1.32
15333234--15333266	17	1.9	17	93	0	57	30	24	18	27	1.98
15341410--15341440	16	1.9	16	100	0	62	19	0	16	64	1.29
15344853--15345126	139	2.0	138	94	0	476	33	10	21	33	1.89
15347730--15347810	24	3.4	24	75	13	94	35	8	2	53	1.45
15358093--15358193	16	6.2	17	72	18	81	4	31	0	63	1.16
15358114--15358193	11	7.3	11	77	13	67	5	32	0	62	1.17
15358103--15358177	27	2.7	27	89	2	114	5	33	0	61	1.19
15365640--15365693	14	4.1	13	77	17	58	64	0	1	33	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125