genome.fa.s46.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  63  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12615626--12615775	20	7.3	20	73	13	119	32	8	12	47	1.71
12615626--12615775	41	3.7	41	79	7	162	32	8	12	47	1.71
12615626--12615765	61	2.3	60	80	8	147	32	7	12	48	1.67
12615792--12615856	32	2.0	33	84	3	87	29	1	9	60	1.37
12615828--12615881	19	2.9	19	81	13	67	29	5	9	55	1.54
12615851--12615894	19	2.3	19	88	4	61	29	4	11	54	1.56
12615966--12616021	19	3.0	19	75	12	62	32	1	10	55	1.45
12622610--12622660	24	2.1	25	85	7	70	84	9	1	3	0.83
12622590--12622668	30	2.6	31	78	8	90	78	8	6	6	1.09
12622676--12622701	7	3.7	7	100	0	52	57	0	30	11	1.34
12624142--12624312	43	4.0	43	80	3	211	29	14	19	37	1.91
12625235--12625294	16	3.7	16	77	4	75	30	8	10	51	1.64
12625276--12625367	20	4.6	20	88	1	130	31	6	9	52	1.60
12625449--12625520	20	3.5	20	74	10	74	34	4	12	48	1.60
12625445--12625627	80	2.3	83	85	9	236	31	4	12	51	1.58
12625411--12625697	101	2.8	103	84	4	348	29	4	11	54	1.55
12625416--12625779	183	2.0	186	85	5	499	29	4	11	53	1.58
12625411--12625790	41	9.3	41	83	5	303	30	5	11	53	1.57
12625802--12625870	32	2.2	30	87	10	95	28	1	8	60	1.35
12625856--12625898	19	2.2	20	84	12	54	32	6	6	53	1.55
12625872--12625912	19	2.1	20	86	4	57	36	4	7	51	1.51
12625983--12626042	19	3.3	19	80	13	72	31	0	10	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12634026--12634083	25	2.2	27	84	6	75	77	0	13	8	0.98
12634026--12634083	17	3.3	18	80	7	66	77	0	13	8	0.98
12634057--12634083	10	2.7	10	100	0	54	74	0	11	14	1.08
12635765--12635816	21	2.5	22	81	9	63	30	19	15	34	1.93
12636252--12636403	33	4.7	33	71	2	103	34	15	8	41	1.78
12636252--12636444	65	3.0	66	72	7	180	32	17	9	40	1.81
12636479--12636778	99	3.0	98	81	4	309	28	17	8	46	1.77
12636493--12636785	33	8.9	33	68	8	112	29	16	8	45	1.76
12636609--12636767	66	2.4	66	77	10	171	32	18	5	43	1.74
12636706--12636849	66	2.2	66	81	5	157	28	18	10	43	1.83
12636549--12636804	33	7.8	33	68	12	116	28	16	9	44	1.79
12636821--12637182	33	11.0	33	70	6	187	26	17	13	42	1.86
12637315--12637380	32	2.1	32	88	0	96	22	21	13	42	1.88
12637438--12637485	21	2.4	20	83	10	62	79	8	4	8	1.06
12640347--12640408	19	3.3	18	82	8	70	41	27	6	24	1.79
12640666--12640746	25	3.2	25	73	15	60	34	28	6	30	1.82
12640681--12640745	25	2.6	26	73	7	64	30	30	6	32	1.82
12647757--12647828	2	36.0	2	83	10	94	47	0	5	47	1.25
12649773--12649800	2	14.0	2	100	0	56	50	0	0	50	1.00
12649674--12649882	105	2.0	103	89	5	323	44	9	12	33	1.74
12652365--12652402	20	2.0	19	85	10	51	81	5	13	0	0.85
12652365--12652398	13	2.6	13	85	0	50	79	5	14	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12655983--12656024	20	2.0	21	90	4	68	45	2	9	42	1.49
12656309--12656348	21	1.9	21	89	0	62	12	5	5	77	1.09
12664244--12664297	2	27.0	2	85	7	74	48	0	5	46	1.25
12665579--12666127	274	2.0	270	87	2	796	36	12	16	34	1.86
12666150--12666345	97	2.0	97	95	0	356	43	9	13	33	1.75
12670143--12670214	29	2.4	29	81	9	83	63	4	11	20	1.43
12673876--12673916	18	2.4	17	83	4	55	31	7	14	46	1.72
12676388--12676427	17	2.4	17	87	4	55	25	0	5	70	1.08
12677049--12677083	16	2.2	16	94	0	61	40	0	2	57	1.14
12679846--12679893	23	2.1	22	84	7	60	56	10	0	33	1.34
12680774--12680849	32	2.4	32	86	2	100	31	7	14	46	1.73
12679745--12681108	691	2.0	661	85	7	1824	38	8	6	46	1.59
12686495--12686685	67	2.8	66	85	4	240	25	9	6	57	1.56
12693730--12694370	309	2.1	307	79	6	683	36	12	14	36	1.83
12694321--12694466	64	2.3	63	81	4	168	34	10	16	37	1.84
12694340--12694459	64	1.9	64	85	3	170	35	12	13	39	1.82
12694569--12694638	35	2.0	35	85	0	95	35	12	17	34	1.88
12695377--12695433	21	2.7	22	75	8	73	63	5	7	24	1.41
12697861--12697900	12	3.3	12	80	13	55	42	22	7	27	1.80
12698710--12699125	187	2.2	185	84	6	545	42	9	12	35	1.75
12698981--12699218	125	1.9	124	85	0	323	37	10	15	36	1.82
12700385--12700466	24	3.4	24	98	0	155	28	19	12	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12700905--12701164	139	1.9	139	80	6	312	30	8	16	44	1.77
12702473--12702550	41	1.9	41	81	5	95	42	12	8	35	1.75
12703076--12703109	16	2.1	16	88	0	50	23	0	0	76	0.79
12704295--12704327	14	2.4	14	94	0	57	54	6	9	30	1.56
12709288--12709518	126	1.8	127	79	10	267	37	12	15	35	1.85
12710217--12710286	35	2.0	35	94	0	122	32	14	20	32	1.92
12713448--12713495	12	3.9	12	76	15	53	43	33	2	20	1.64
12714068--12715222	186	6.2	185	82	4	1194	38	13	14	33	1.85
12719763--12719896	67	2.0	67	92	2	225	29	13	15	41	1.85
12722419--12722470	20	2.6	21	75	9	63	46	13	21	19	1.84
12722985--12723085	34	3.0	33	75	5	94	34	19	14	30	1.92
12726528--12726559	9	3.4	10	87	12	50	21	71	0	6	1.07
12726528--12726564	19	1.9	19	89	10	58	21	70	0	8	1.13
12727499--12727533	18	2.0	18	94	5	63	20	5	0	74	1.02
12728591--12728632	22	1.9	22	85	9	59	71	4	14	9	1.28
12729335--12729360	7	3.7	7	100	0	52	73	0	0	26	0.84
12730232--12730276	19	2.4	19	82	10	56	75	0	4	20	0.97
12730643--12730752	51	2.2	51	85	8	145	54	10	10	25	1.64
12732069--12732101	17	2.0	17	88	5	50	57	6	3	33	1.38
12732089--12732140	22	2.3	22	86	3	68	57	1	5	34	1.33
12738395--12738593	62	3.2	64	72	6	190	38	13	14	34	1.85
12738325--12738593	126	2.1	126	82	2	308	37	12	15	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12741860--12741921	13	4.9	13	72	7	56	46	24	8	20	1.77
12741862--12741929	25	2.7	25	90	0	109	47	26	7	19	1.75
12742654--12742844	61	3.1	60	71	14	156	42	9	12	35	1.74
12742696--12743547	426	2.0	427	81	6	1017	39	13	11	35	1.81
12742899--12743746	435	2.0	424	79	8	917	39	13	11	35	1.81
12751265--12751299	18	1.9	18	88	0	52	57	2	5	34	1.37
12756475--12756782	164	1.9	165	92	0	519	29	16	15	38	1.90
12763464--12763540	39	2.0	38	89	2	118	41	5	9	44	1.58
12763688--12763716	11	2.6	11	100	0	58	58	6	6	27	1.50
12764573--12764625	26	2.1	24	82	10	61	73	3	3	18	1.14
12765004--12765099	14	6.3	15	72	23	60	68	0	8	22	1.16
12765004--12765116	20	5.5	20	74	15	79	67	0	8	23	1.19
12765041--12765131	35	2.7	34	80	11	100	68	1	7	23	1.22
12765004--12765130	62	2.1	61	81	15	147	67	0	7	23	1.22
12765144--12765184	21	1.9	22	90	5	66	68	2	9	19	1.29
12765596--12765748	77	2.0	77	100	0	306	26	10	24	37	1.88
12769889--12769930	22	2.0	21	90	4	66	30	0	9	59	1.29
12774291--12774320	3	10.3	3	92	7	53	30	0	0	70	0.88
12775081--12775229	50	3.0	49	87	3	208	18	8	3	69	1.27
12775097--12775188	27	3.6	27	68	15	86	19	6	2	71	1.18
12786827--12787038	64	3.2	66	76	10	193	20	19	11	48	1.79
12787775--12787835	3	20.3	3	100	0	122	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12788560--12788662	25	4.1	24	73	15	84	21	6	1	69	1.21
12790392--12790431	18	2.2	18	86	8	55	5	12	17	65	1.44
12791760--12792228	63	7.4	63	75	5	318	34	8	10	46	1.68
12791760--12792219	126	3.6	124	80	3	382	34	8	10	46	1.69
12792060--12792234	32	5.5	31	67	18	101	38	6	9	46	1.61
12791806--12792221	189	2.2	187	80	5	462	34	8	10	46	1.68
12791932--12792240	126	2.5	126	85	0	402	36	8	8	46	1.65
12791864--12792228	63	5.8	63	76	1	329	35	9	8	46	1.66
12795055--12795102	21	2.2	22	92	3	80	54	0	0	45	0.99
12797302--12797377	38	2.0	38	94	0	134	26	7	13	52	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125