genome.fa.s46.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  95  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18488064--18488362	89	3.4	87	79	7	284	22	1	28	48	1.59
18488641--18488685	18	2.6	17	89	3	63	28	0	2	68	1.01
18488853--18488887	10	3.5	10	88	0	52	65	2	0	31	1.07
18488853--18488896	21	2.2	20	84	12	54	70	2	0	27	0.99
18489993--18490039	17	2.9	16	82	17	53	38	0	2	59	1.09
18490082--18490762	334	2.0	336	93	2	1159	41	16	16	25	1.89
18490608--18490753	72	2.0	72	81	2	168	45	16	17	20	1.86
18490967--18491038	22	3.2	22	86	5	74	38	15	19	26	1.91
18490979--18491038	22	2.7	22	87	7	77	38	16	21	23	1.93
18491433--18491504	37	1.9	37	83	5	92	52	18	16	12	1.74
18491737--18491973	33	7.2	33	76	7	196	34	14	20	30	1.92
18493927--18493977	25	2.0	25	84	0	66	49	5	23	21	1.71
18496189--18496285	4	24.2	4	75	4	88	47	5	23	23	1.72
18496211--18496278	24	2.8	24	95	0	127	48	5	23	22	1.72
18496189--18496254	32	2.1	32	94	0	114	46	4	24	24	1.71
18499601--18499674	28	2.6	28	86	4	94	25	1	24	48	1.59
18499600--18499891	89	3.4	83	73	15	222	22	1	26	50	1.57
18499707--18499752	21	2.2	21	92	0	74	15	0	26	58	1.37
18499726--18499884	29	5.4	28	72	8	102	21	0	27	50	1.53
18500184--18500213	15	1.9	16	93	6	53	26	0	0	73	0.84
18500182--18500216	18	1.9	18	100	0	70	28	0	0	71	0.86
18501444--18501490	17	2.9	16	82	17	53	38	0	2	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18503957--18503994	18	2.1	19	85	5	51	60	2	0	36	1.11
18505497--18505693	64	3.0	66	83	8	217	40	11	8	40	1.71
18506807--18506930	5	24.8	5	70	18	55	75	4	4	16	1.12
18506852--18506924	28	2.6	29	75	14	73	76	4	1	17	1.01
18507797--18507888	46	2.0	46	100	0	184	47	15	2	34	1.57
18508142--18508284	3	48.7	3	86	9	170	33	0	4	61	1.20
18508103--18508222	48	2.5	48	95	1	215	32	2	5	60	1.32
18508993--18509030	20	1.9	20	94	0	67	10	13	0	76	1.02
18509035--18509086	22	2.6	21	85	14	67	23	0	0	76	0.78
18513910--18513945	16	2.2	16	90	0	54	77	0	16	5	0.94
18514994--18515255	86	3.0	86	81	0	272	34	17	12	35	1.88
18515412--18515647	55	4.3	55	76	5	199	22	22	13	41	1.89
18515478--18515584	56	1.9	55	88	1	160	19	23	16	40	1.91
18515929--18516031	3	34.0	3	78	5	55	27	0	9	62	1.33
18515929--18515977	13	3.8	12	80	17	53	28	0	6	65	1.16
18516794--18516864	22	3.2	22	80	13	83	21	2	1	74	1.02
18516802--18516863	30	2.1	30	82	14	76	22	1	1	74	1.00
18516910--18516945	15	2.4	15	85	0	54	86	8	2	2	0.77
18521216--18521240	1	25.0	1	100	0	50	100	0	0	0	0.00
18522859--18522884	2	13.0	2	100	0	52	0	50	0	50	1.00
18523335--18523362	11	2.5	11	100	0	56	0	7	0	92	0.37
18529735--18529802	24	2.8	24	82	6	75	41	2	2	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18529924--18529965	2	21.0	2	95	0	75	2	47	0	50	1.14
18530389--18530442	27	1.9	29	81	7	67	35	3	1	59	1.26
18530427--18530479	21	2.4	22	84	9	72	35	1	0	62	1.06
18530621--18530661	20	2.0	20	85	0	55	39	0	17	43	1.49
18530601--18530707	51	2.1	51	82	0	124	37	0	20	41	1.59
18530664--18530703	20	2.0	20	90	4	64	37	0	22	40	1.54
18535194--18535231	12	3.0	13	84	7	60	42	34	7	15	1.76
18544709--18544751	22	2.0	22	85	0	59	60	16	6	16	1.56
18546035--18546084	2	25.0	2	100	0	100	0	50	0	50	1.00
18549026--18549061	3	12.0	3	100	0	72	66	0	0	33	0.92
18550129--18550162	12	2.9	12	91	4	52	82	0	0	17	0.67
18553730--18553756	1	27.0	1	100	0	54	0	0	0	100	0.00
18560602--18560769	86	2.0	85	86	1	237	36	14	11	37	1.83
18562692--18562721	2	15.0	2	100	0	60	50	0	0	50	1.00
18566194--18566229	12	2.9	12	91	4	54	52	0	0	47	1.00
18566257--18566318	33	1.9	32	83	9	81	46	4	1	46	1.33
18566395--18566428	17	2.0	17	88	0	50	61	0	5	32	1.20
18566425--18566457	16	2.1	16	88	5	50	60	0	6	33	1.21
18566719--18566772	27	2.0	27	85	0	72	51	3	1	42	1.30
18566834--18566879	25	1.9	24	86	8	67	41	0	2	56	1.11
18567438--18567526	20	4.6	19	80	4	97	47	11	11	30	1.74
18567438--18567526	39	2.3	39	78	7	101	47	11	11	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18569259--18569299	21	1.9	22	85	5	57	70	4	2	21	1.18
18570193--18570277	26	3.3	26	95	3	147	49	7	1	42	1.37
18570193--18570277	12	6.8	12	90	8	125	49	7	1	42	1.37
18570749--18570800	20	2.6	20	85	11	63	36	3	9	50	1.54
18570755--18570807	25	2.1	24	83	13	63	37	1	11	49	1.50
18570843--18570946	3	36.3	3	83	12	112	33	3	0	61	1.21
18571819--18571885	15	4.7	14	78	7	73	17	4	2	74	1.11
18571819--18571894	15	5.3	14	77	12	66	17	3	3	75	1.12
18571819--18571895	30	2.7	29	78	13	79	18	3	3	74	1.13
18574274--18574322	23	2.1	23	88	0	71	48	4	12	34	1.59
18581954--18582030	39	2.0	39	86	0	109	33	20	5	40	1.75
18582030--18582096	21	3.4	21	67	23	63	26	22	5	44	1.75
18582033--18582129	38	2.5	38	86	1	140	26	26	5	41	1.77
18588804--18588870	34	2.0	33	88	8	100	29	2	2	64	1.23
18589359--18589387	13	2.3	13	94	5	51	62	10	0	27	1.28
18589391--18589427	18	2.1	18	94	0	65	64	5	2	27	1.28
18589654--18589716	30	2.2	31	80	13	80	39	7	3	49	1.48
18593079--18593116	14	2.8	14	88	4	51	21	0	5	73	1.02
18593124--18593186	15	4.7	13	74	22	51	15	7	7	68	1.38
18596936--18597072	51	2.7	52	77	5	136	37	8	18	35	1.82
18597590--18597628	14	2.8	14	88	0	51	23	2	5	69	1.21
18615057--18615261	39	5.2	39	77	6	189	22	11	20	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18617201--18617276	38	2.1	36	82	7	91	42	14	11	31	1.82
18617210--18617292	38	2.2	39	80	10	100	45	10	12	31	1.76
18619248--18619289	21	2.0	21	90	0	66	50	7	7	35	1.57
18619479--18619521	20	2.1	20	83	12	52	16	23	6	53	1.67
18635133--18635189	28	2.0	28	93	0	96	33	15	17	33	1.92
18640940--18641832	356	2.5	354	84	4	1136	36	15	12	35	1.84
18645846--18645913	35	1.9	35	88	5	102	39	17	11	30	1.86
18648870--18648902	15	2.2	15	100	0	66	36	6	36	21	1.78
18656671--18656695	2	12.5	2	100	0	50	48	0	0	52	1.00
18656555--18656807	120	2.1	121	92	3	422	39	6	9	43	1.64
18657683--18657707	2	12.5	2	100	0	50	48	0	0	52	1.00
18657795--18657836	20	2.0	21	82	13	52	16	7	7	69	1.34
18659783--18659842	20	3.2	19	72	15	61	53	0	0	46	1.00
18660221--18660276	20	2.7	20	75	13	51	41	3	0	55	1.17
18664496--18664554	31	2.0	31	86	6	86	47	5	0	47	1.24
18673769--18673819	17	2.9	17	81	18	61	47	7	0	45	1.32
18674829--18674858	10	2.8	11	90	10	53	73	0	0	26	0.84
18684809--18684950	62	2.3	60	77	11	146	35	10	12	41	1.78
18686337--18686462	32	3.8	34	70	17	97	50	2	5	41	1.38
18688187--18688254	30	2.3	30	89	0	100	27	45	2	23	1.67
18688172--18688256	27	3.0	27	77	9	98	28	40	4	27	1.76
18688217--18689135	48	19.1	48	75	7	686	23	45	4	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18688215--18689135	96	9.6	96	77	6	761	23	45	4	26	1.70
18688361--18688440	36	2.2	36	86	0	106	27	47	5	20	1.70
18688184--18688584	180	2.3	180	87	5	577	24	45	3	26	1.69
18688889--18688972	27	3.3	27	65	19	72	23	46	4	25	1.72
18697556--18697745	56	3.5	55	83	5	215	56	12	17	13	1.67
18698572--18698728	83	1.9	83	81	0	188	20	28	16	34	1.94
18698410--18698767	197	1.8	197	84	0	491	23	25	15	34	1.95
18699042--18699118	3	25.3	3	81	7	93	36	2	1	59	1.19
18699718--18699768	19	2.7	19	71	0	57	41	17	11	29	1.85
18700126--18700154	9	3.3	9	90	9	51	89	0	0	10	0.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125