genome.fa.s46.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  89  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17470809--17470854	20	2.3	20	92	0	74	45	0	0	54	0.99
17471132--17471165	3	11.3	3	100	0	68	64	0	0	35	0.94
17474341--17474378	19	2.0	20	85	15	53	36	0	7	55	1.29
17475601--17475631	14	2.1	15	94	5	55	32	0	0	67	0.91
17475885--17475926	12	3.7	12	81	12	52	35	2	0	61	1.09
17476828--17476886	3	19.7	3	100	0	118	66	0	0	33	0.92
17476980--17477022	12	3.7	12	79	17	54	46	6	2	44	1.43
17477353--17477402	11	4.7	11	85	7	68	52	26	0	22	1.48
17479996--17480042	3	15.7	3	90	0	76	29	31	2	36	1.70
17481929--17481970	17	2.2	20	72	28	54	35	11	9	42	1.74
17481934--17481973	17	2.4	17	100	0	80	35	7	10	47	1.65
17483192--17483269	20	3.8	21	88	5	115	46	2	0	51	1.14
17483192--17483268	41	1.9	41	89	2	120	46	2	0	50	1.15
17485107--17485261	59	2.6	59	88	0	238	56	20	2	20	1.53
17485489--17485635	64	2.2	66	80	10	151	32	9	12	45	1.74
17493493--17493537	21	2.2	20	88	4	63	28	0	4	66	1.11
17494861--17494904	16	2.8	15	82	6	52	29	4	9	56	1.50
17497336--17497362	10	2.7	10	100	0	54	44	7	0	48	1.31
17498461--17498614	7	24.8	6	71	23	81	14	0	37	46	1.50
17498461--17498614	18	8.3	17	73	21	89	14	0	37	46	1.50
17498496--17498606	37	3.1	34	77	13	98	14	0	38	45	1.51
17498538--17498614	31	2.5	31	83	6	86	14	0	37	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17501398--17501429	12	2.7	12	95	0	55	87	0	12	0	0.54
17501621--17501689	34	2.0	34	100	0	138	43	8	14	33	1.76
17503126--17503174	19	2.5	19	78	12	55	30	8	12	48	1.69
17503533--17503563	6	5.2	6	96	0	53	19	0	12	67	1.22
17512459--17512527	32	2.2	32	83	0	84	46	4	8	40	1.55
17520443--17520499	17	3.4	17	80	11	55	68	0	29	1	1.00
17520466--17520496	15	2.1	15	93	0	53	77	0	22	0	0.77
17520934--17521017	43	2.0	43	83	4	107	36	1	7	54	1.35
17521110--17521148	20	1.9	20	89	5	60	64	2	2	30	1.21
17526237--17526266	2	15.0	2	100	0	60	50	0	0	50	1.00
17528152--17528350	109	1.8	110	89	5	314	43	18	13	24	1.86
17530997--17531030	17	1.9	17	88	5	50	79	11	0	8	0.94
17534747--17534789	17	2.8	16	83	13	54	72	6	0	20	1.08
17537337--17537393	27	2.1	27	93	3	98	36	12	15	35	1.85
17537344--17537445	43	2.4	42	88	5	141	39	9	18	32	1.84
17537504--17537558	16	3.3	16	75	9	56	40	10	12	36	1.79
17537512--17537565	16	3.2	17	77	10	58	40	7	14	37	1.74
17537551--17537599	17	2.8	18	78	3	64	32	8	18	40	1.80
17537545--17537627	34	2.4	34	79	18	93	34	7	19	38	1.79
17538982--17539052	32	2.2	31	83	11	90	40	23	5	29	1.78
17539149--17539188	21	1.9	21	89	0	62	67	27	0	5	1.11
17540064--17540118	19	2.9	19	91	0	74	61	5	3	29	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17552754--17552783	15	1.9	16	93	6	53	26	33	6	33	1.83
17554027--17554158	7	19.4	7	69	20	66	19	0	32	47	1.50
17554027--17554057	15	2.1	15	93	0	53	16	0	35	48	1.46
17554032--17554156	27	4.7	26	75	19	114	19	0	32	48	1.49
17554027--17554100	19	4.1	19	76	15	61	17	0	35	47	1.48
17554032--17554136	14	7.8	13	71	19	74	18	0	33	48	1.48
17554112--17554184	7	10.6	7	78	8	78	24	0	28	46	1.53
17554085--17554184	41	2.4	42	83	6	125	24	0	29	47	1.52
17569093--17569117	2	12.5	2	100	0	50	48	0	0	52	1.00
17571844--17571876	16	2.1	16	94	0	57	60	3	6	30	1.36
17574508--17574838	59	5.7	58	82	6	386	35	13	8	42	1.75
17575875--17575927	24	2.2	25	86	3	72	32	18	33	15	1.92
17576864--17577519	97	6.7	98	82	12	744	33	13	13	38	1.84
17576867--17577467	200	3.0	201	86	6	791	33	13	13	39	1.83
17577262--17577300	9	4.3	9	90	9	62	12	0	0	87	0.55
17577259--17577300	17	2.4	18	92	8	77	16	0	0	83	0.65
17577261--17577293	8	4.0	8	92	7	57	12	0	0	87	0.53
17577165--17577392	111	2.1	111	89	4	352	31	12	12	44	1.79
17577485--17577734	41	6.1	41	85	1	306	38	19	16	26	1.92
17578026--17578106	42	1.9	42	87	5	119	34	17	11	37	1.85
17578291--17578331	22	1.9	21	95	5	73	34	19	9	36	1.85
17578750--17578878	63	2.0	63	90	0	204	32	24	6	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17579568--17579597	8	3.8	8	100	0	60	10	0	0	90	0.47
17579598--17579642	13	3.6	13	94	5	76	13	15	4	66	1.39
17584405--17584545	56	2.5	56	89	3	223	39	15	6	39	1.73
17584481--17584670	100	1.9	97	88	7	287	36	13	6	43	1.70
17584422--17584716	156	1.9	151	84	7	389	37	13	6	42	1.70
17584574--17584827	57	4.4	57	80	10	302	35	13	5	44	1.68
17584564--17584827	116	2.3	116	91	3	415	35	13	6	45	1.68
17584845--17584903	6	9.8	6	84	12	77	79	0	1	18	0.81
17584845--17584907	18	3.5	18	87	8	85	79	0	3	17	0.86
17587886--17587943	22	2.7	22	86	7	75	53	0	0	46	1.00
17589159--17589201	16	2.5	18	81	7	54	34	0	0	65	0.93
17593297--17593335	17	2.3	17	90	0	60	23	5	7	64	1.40
17594378--17594435	25	2.3	26	80	14	68	13	3	6	75	1.13
17594378--17594428	19	2.6	20	82	17	63	13	3	5	76	1.11
17594394--17594439	12	3.8	11	83	16	56	15	2	4	78	1.01
17594400--17594461	31	2.0	32	84	15	85	16	4	3	75	1.10
17600117--17600184	35	1.9	35	90	0	109	35	13	11	39	1.81
17600051--17600160	52	2.1	53	79	5	125	31	12	13	41	1.82
17600795--17601000	86	2.4	86	82	2	236	26	14	14	45	1.83
17600795--17600997	43	4.7	43	80	3	203	25	14	14	45	1.82
17602260--17602299	20	2.0	20	95	0	71	15	0	2	82	0.77
17602260--17602312	11	4.9	11	84	11	56	18	0	3	77	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17604062--17604103	16	2.7	16	85	10	52	45	0	0	54	0.99
17604036--17604113	29	2.9	25	74	22	70	39	0	0	60	0.97
17604721--17604764	18	2.4	18	100	0	88	22	0	4	72	1.02
17604846--17604904	27	2.2	27	84	6	75	6	10	3	79	1.03
17605019--17605052	17	2.1	17	88	5	52	52	0	2	44	1.16
17606437--17606519	41	2.0	41	100	0	166	36	25	4	33	1.77
17608395--17608447	27	2.0	27	88	7	81	28	30	26	15	1.96
17611494--17611588	47	2.0	47	85	0	127	23	14	23	38	1.91
17611884--17611949	33	2.0	33	90	0	105	19	3	25	51	1.61
17613053--17613085	17	1.9	17	100	0	66	60	9	0	30	1.27
17617837--17617889	27	2.0	25	89	7	79	30	11	0	58	1.33
17618596--17618622	11	2.5	11	100	0	54	70	0	7	22	1.12
17619099--17619130	16	2.0	16	100	0	64	31	6	6	56	1.49
17621680--17621877	56	3.5	56	68	19	165	52	3	4	39	1.39
17621640--17621872	116	2.0	116	99	0	457	52	3	5	38	1.42
17621876--17621914	16	2.4	16	86	0	51	28	2	2	66	1.18
17622138--17622182	20	2.2	20	84	7	56	33	6	0	60	1.23
17622142--17622188	19	2.5	19	75	6	51	34	6	0	59	1.23
17623910--17624061	43	3.5	43	79	11	139	27	14	13	44	1.83
17623938--17624142	88	2.3	88	79	9	229	26	12	16	44	1.83
17623919--17624131	44	4.9	43	81	5	198	26	13	16	43	1.84
17627156--17627193	19	2.0	19	100	0	76	21	26	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17628489--17628518	15	1.9	16	93	6	53	3	6	6	83	0.90
17630424--17630460	19	1.9	19	94	0	65	27	10	18	43	1.83
17630443--17630859	125	3.3	121	74	10	374	35	12	12	39	1.82
17630443--17630859	63	6.6	62	71	12	190	35	12	12	39	1.82
17630896--17631187	61	4.7	61	73	12	224	35	13	14	36	1.84
17630601--17631153	294	1.9	297	82	4	715	35	13	13	38	1.84
17633936--17633974	20	2.0	19	85	14	53	25	12	5	56	1.57
17638024--17638070	21	2.2	21	77	7	51	51	4	17	27	1.64
17639069--17639102	15	2.2	16	89	5	52	20	14	17	47	1.83
17640195--17640226	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125