genome.fa.s46.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  82  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16447095--16447120	13	2.0	13	100	0	52	23	0	0	76	0.78
16447251--16447306	20	2.8	20	75	2	58	66	21	1	10	1.32
16447712--16447742	15	2.1	15	93	0	53	80	0	9	9	0.90
16447729--16447920	3	63.3	3	69	16	112	60	2	4	32	1.29
16448378--16448407	2	15.0	2	100	0	60	50	0	0	50	1.00
16450569--16450607	20	1.9	20	84	5	51	48	10	7	33	1.66
16453544--16453573	3	10.0	3	92	0	51	36	0	30	33	1.58
16453548--16453579	15	2.1	15	94	0	55	40	3	21	34	1.69
16453575--16453601	3	9.0	3	100	0	54	66	0	0	33	0.92
16454583--16454625	23	1.9	23	90	4	70	39	6	11	41	1.68
16461085--16461359	145	1.9	145	87	1	408	32	13	17	37	1.88
16466106--16466181	7	10.7	7	74	14	59	80	2	3	13	0.96
16466107--16466173	24	2.8	24	80	17	84	80	2	2	13	0.94
16466114--16466181	15	4.4	15	74	18	50	79	2	4	13	1.00
16466106--16466181	32	2.4	30	82	10	91	80	2	3	13	0.96
16467253--16467365	49	2.3	51	89	4	176	29	12	18	39	1.87
16470366--16470402	3	12.3	3	100	0	74	64	0	0	35	0.94
16472018--16472047	14	2.1	14	93	0	51	30	0	0	70	0.88
16472449--16472505	23	2.5	23	80	5	62	36	0	1	61	1.07
16472461--16472506	23	2.0	23	86	0	65	34	0	2	63	1.07
16473030--16473069	5	7.6	5	83	10	53	72	0	0	27	0.85
16473018--16473069	27	1.9	27	92	0	86	65	0	1	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16473030--16473071	17	2.6	16	85	7	59	71	0	0	28	0.86
16473014--16473076	27	2.3	27	80	2	81	61	0	4	33	1.17
16473362--16473417	28	2.1	26	83	12	69	35	3	3	57	1.34
16473668--16473704	16	2.3	16	85	0	56	78	0	10	10	0.97
16473802--16473840	16	2.5	15	84	12	51	61	2	0	35	1.10
16473946--16473994	25	2.0	25	84	8	64	73	0	20	6	1.04
16476790--16476847	21	2.8	21	92	2	91	18	13	13	53	1.73
16494432--16494470	19	2.1	19	85	9	53	10	23	0	66	1.22
16494444--16494480	19	1.9	19	88	0	56	10	21	0	67	1.21
16499406--16499467	29	2.1	30	82	8	74	8	20	3	67	1.31
16499863--16499913	11	4.5	11	85	4	66	9	0	3	86	0.70
16499861--16499919	8	7.2	8	83	9	75	10	0	3	86	0.68
16499862--16499919	30	1.9	31	85	3	82	10	0	3	86	0.69
16500352--16500424	36	2.0	36	97	0	137	46	10	6	35	1.66
16505608--16505666	21	2.5	23	78	13	59	49	0	5	45	1.24
16505868--16505904	17	2.2	17	95	0	65	40	10	18	29	1.85
16507029--16507080	25	2.0	25	88	3	77	36	5	11	46	1.64
16509293--16509467	87	2.0	87	92	0	287	31	19	12	37	1.88
16510290--16510326	2	18.5	2	94	0	65	2	45	0	51	1.15
16511409--16511494	7	12.6	7	72	16	56	18	2	3	75	1.05
16511411--16511458	6	7.5	6	79	11	51	12	2	6	79	1.01
16511411--16511467	20	2.9	19	79	12	62	14	1	5	78	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16515940--16516248	119	2.6	119	81	8	348	31	13	7	47	1.71
16515979--16516319	60	5.7	60	75	9	281	34	13	6	45	1.69
16515950--16516315	119	3.1	115	75	13	337	33	13	6	46	1.69
16518027--16518170	16	9.5	15	68	13	80	46	33	2	18	1.60
16526527--16526590	22	3.0	21	86	6	83	29	29	15	25	1.96
16526648--16526707	23	2.7	23	81	2	68	25	18	21	35	1.96
16526781--16526829	23	2.1	23	88	0	71	26	22	18	32	1.97
16526608--16527061	133	3.4	133	81	4	506	26	20	14	38	1.91
16526933--16526976	22	2.0	23	86	4	63	34	25	11	29	1.91
16527140--16527182	22	2.0	22	85	0	59	27	23	18	30	1.98
16527053--16527259	109	1.9	109	89	4	319	21	21	18	38	1.94
16527162--16527341	87	2.1	87	88	0	261	22	21	17	38	1.93
16526936--16527420	196	2.5	196	81	5	532	23	20	16	38	1.92
16527463--16527505	22	2.0	22	90	0	68	27	23	16	32	1.96
16528090--16528133	14	3.1	14	80	3	52	77	11	6	4	1.11
16529152--16529326	16	11.5	15	68	17	76	47	29	2	21	1.63
16530596--16530656	30	2.1	30	85	14	83	34	11	6	47	1.66
16531730--16531783	27	2.0	26	82	17	65	51	3	1	42	1.30
16531774--16531835	22	3.0	20	76	9	61	40	1	0	58	1.08
16531766--16531822	29	1.9	30	85	3	80	35	1	1	61	1.17
16532386--16532433	25	2.0	24	83	4	60	56	0	6	37	1.25
16532550--16532614	23	2.8	23	75	13	71	55	4	3	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16533185--16533228	22	2.0	23	86	4	63	59	2	6	31	1.36
16533324--16533410	8	10.2	8	72	17	52	33	0	1	65	1.00
16533324--16533384	9	7.3	9	74	18	53	34	0	1	63	1.04
16533338--16533421	27	3.1	27	78	14	77	35	0	1	63	1.03
16533324--16533391	17	4.1	16	73	17	59	35	0	1	63	1.04
16533380--16533430	10	5.2	10	77	13	52	37	1	0	60	1.08
16533380--16533465	9	9.4	9	70	12	50	34	3	2	59	1.27
16533571--16533642	38	1.9	37	88	2	108	38	4	1	55	1.28
16534261--16534290	14	2.1	14	93	6	51	66	6	0	26	1.16
16534261--16534290	15	2.0	15	100	0	60	66	6	0	26	1.16
16534410--16534477	27	2.6	27	83	4	77	48	0	0	51	1.00
16534410--16534471	26	2.5	26	80	19	80	48	0	0	51	1.00
16534464--16534577	18	6.8	17	75	19	98	40	0	2	56	1.19
16534481--16534549	15	4.6	15	73	22	56	39	1	1	57	1.16
16534469--16534596	67	1.9	67	79	11	143	42	0	3	53	1.22
16534457--16534569	45	2.4	48	81	8	135	40	0	2	55	1.20
16534523--16534578	17	3.2	18	82	14	64	41	0	1	57	1.09
16534469--16534574	22	4.7	21	73	16	88	39	0	2	56	1.20
16536312--16536365	19	2.6	22	85	8	69	72	1	1	24	1.05
16536313--16536344	15	2.1	16	94	5	57	71	0	3	25	1.00
16536313--16536366	7	7.9	7	80	12	58	72	1	1	24	1.05
16536326--16536379	25	2.2	25	87	6	76	77	3	0	18	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16537453--16537486	10	3.4	10	91	0	50	82	2	2	11	0.89
16537625--16537672	18	2.7	18	80	6	62	62	0	6	31	1.20
16537625--16537679	18	2.9	19	76	7	60	63	0	7	29	1.21
16537833--16537864	15	2.1	15	100	0	64	62	6	0	31	1.20
16545328--16545381	14	3.6	15	80	14	58	12	22	1	62	1.39
16549239--16549292	18	2.9	18	80	2	54	74	7	3	14	1.18
16549246--16549294	26	1.9	25	91	4	80	75	6	2	16	1.09
16550629--16550674	18	2.6	18	79	6	58	65	0	6	28	1.17
16550843--16550873	16	2.0	16	93	6	55	70	0	0	29	0.87
16559356--16559775	42	10.7	41	70	14	242	23	13	23	39	1.90
16559452--16559733	75	3.8	74	77	2	287	23	14	23	39	1.91
16559604--16559825	117	1.9	117	85	0	309	25	12	22	40	1.89
16560031--16560300	50	5.5	47	85	6	297	28	10	20	40	1.85
16560031--16560291	98	2.7	95	83	8	292	29	10	20	40	1.85
16560498--16560533	11	3.4	10	88	11	54	0	13	0	86	0.58
16560492--16560534	15	2.9	16	83	13	56	0	16	0	83	0.64
16560494--16560534	14	2.9	14	86	13	50	0	14	0	85	0.60
16562978--16563044	31	2.2	31	94	0	116	20	11	20	46	1.82
16566492--16566534	21	2.0	21	90	0	68	25	9	23	41	1.84
16570904--16570934	14	2.2	14	100	0	62	67	6	6	19	1.35
16572207--16572253	23	2.0	23	100	0	94	34	12	31	21	1.91
16576463--16576488	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16576608--16576639	2	16.0	2	100	0	64	50	0	0	50	1.00
16576349--16576633	147	1.9	148	85	4	389	38	12	12	36	1.81
16576842--16576871	2	15.0	2	100	0	60	50	0	0	50	1.00
16578562--16578629	30	2.3	31	80	12	79	22	0	32	45	1.52
16578591--16578622	16	2.0	16	93	0	55	21	0	34	43	1.53
16578580--16578881	30	9.9	29	73	15	184	19	1	30	48	1.59
16578580--16578717	45	3.1	45	83	11	151	18	0	30	50	1.52
16578607--16578872	75	3.5	74	84	6	302	19	1	30	47	1.60
16579260--16579332	36	2.0	35	82	12	85	69	2	1	26	1.09
16579965--16580004	13	3.0	13	88	3	53	2	5	15	77	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125