genome.fa.s46.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  29  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5514002--5514037	18	1.9	19	94	5	65	52	0	0	47	1.00
5513963--5514069	26	4.1	26	70	25	91	42	0	0	56	1.05
5514049--5514079	15	2.1	15	93	0	53	45	0	3	51	1.17
5514593--5514630	19	2.0	19	94	0	67	55	0	0	44	0.99
5514633--5514674	22	1.9	22	85	9	59	28	4	4	61	1.36
5514848--5514883	19	2.0	17	89	10	54	72	0	0	27	0.85
5514876--5514915	19	2.0	20	90	4	64	50	10	5	35	1.58
5515053--5515106	15	3.5	15	74	18	56	40	7	0	51	1.30
5515050--5515116	32	2.1	32	97	0	125	40	7	0	52	1.30
5515068--5515116	15	3.0	17	66	22	50	40	8	0	51	1.32
5517446--5517477	16	2.1	16	94	5	57	65	0	0	34	0.93
5517760--5517797	20	1.9	20	88	0	58	47	0	0	52	1.00
5517769--5517813	18	2.4	18	85	3	54	46	0	0	53	1.00
5517777--5517824	25	2.0	24	83	4	60	50	0	2	47	1.12
5518942--5518990	21	2.3	21	82	0	53	67	0	2	30	1.02
5518998--5519046	13	3.9	12	76	7	53	57	2	0	40	1.10
5525418--5525461	22	2.0	22	91	8	72	45	13	9	31	1.75
5533827--5533861	6	5.8	6	96	0	61	37	0	11	51	1.38
5543712--5543740	14	2.0	15	93	6	51	27	3	41	27	1.72
5547646--5547707	12	5.2	12	86	0	79	8	43	0	48	1.32
5555419--5555457	2	19.5	2	100	0	78	51	0	0	48	1.00
5569633--5569657	10	2.5	10	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5569931--5569980	23	2.1	24	88	3	75	38	0	0	62	0.96
5570046--5570090	17	2.6	17	85	0	54	33	0	0	66	0.92
5570649--5570708	22	2.7	22	68	14	52	55	8	3	33	1.47
5585322--5585387	12	5.6	12	76	18	59	48	1	0	50	1.10
5585363--5585400	17	2.4	16	86	8	51	52	0	0	47	1.00
5585464--5585534	28	2.4	29	77	11	74	47	1	2	47	1.25
5587059--5587201	71	2.0	70	95	1	259	27	4	14	53	1.62
5601493--5601535	20	2.2	20	83	4	52	44	2	0	53	1.13
5601499--5601536	20	1.9	20	88	0	58	44	0	0	55	0.99
5603069--5603107	16	2.3	18	91	8	64	20	0	2	76	0.90
5606801--5606866	34	1.9	33	84	6	87	60	1	3	34	1.21
5607617--5607692	30	2.5	30	79	14	84	63	1	3	31	1.21
5613511--5613547	19	1.9	19	88	0	56	48	0	0	51	1.00
5613591--5613628	15	2.4	16	82	8	51	47	2	0	50	1.15
5614002--5614052	26	2.0	26	88	3	77	58	0	0	41	0.98
5614026--5614079	21	2.5	21	85	8	65	53	0	0	46	1.00
5614942--5614981	20	2.0	20	85	4	55	55	5	0	40	1.22
5615175--5615219	11	4.0	12	77	13	51	35	0	2	62	1.08
5615165--5615206	22	1.9	22	85	0	57	38	0	0	61	0.96
5615174--5615218	22	2.1	22	87	4	65	33	0	2	64	1.06
5617018--5617056	19	2.0	20	85	5	53	28	0	2	69	1.02
5617127--5617167	21	2.0	22	85	9	59	46	7	7	39	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5617619--5617653	17	2.1	17	88	0	52	34	5	0	60	1.21
5618510--5618534	12	2.1	12	100	0	50	44	24	8	24	1.80
5619278--5619304	2	13.5	2	100	0	54	48	0	0	51	1.00
5636110--5636153	13	3.7	12	82	8	54	65	0	2	31	1.05
5636139--5636189	23	2.3	22	80	10	59	60	0	1	37	1.08
5636221--5636265	12	3.7	12	77	16	56	55	2	0	42	1.12
5636221--5636262	14	3.2	14	77	19	54	54	2	0	42	1.13
5636221--5636268	18	2.6	18	77	9	53	56	2	0	41	1.11
5636221--5636281	20	2.8	21	82	12	61	52	1	1	44	1.20
5639630--5639663	2	17.0	2	100	0	68	50	0	0	50	1.00
5641044--5641072	12	2.3	13	94	5	51	41	6	10	41	1.66
5654062--5654132	23	3.1	23	66	8	54	45	1	1	52	1.18
5654436--5654494	14	4.2	14	75	12	50	40	0	0	59	0.97
5654457--5654510	16	3.4	16	76	5	56	46	0	0	53	1.00
5654448--5654510	31	2.1	31	84	3	83	44	0	0	55	0.99
5654469--5654511	15	2.8	15	78	3	50	48	0	0	51	1.00
5666814--5666940	64	2.0	64	88	0	191	16	18	14	50	1.78
5668042--5668073	16	1.9	17	93	6	57	62	0	0	37	0.95
5668627--5668658	16	2.0	16	100	0	64	68	0	0	31	0.90
5679221--5679259	19	2.0	20	85	5	53	48	0	7	43	1.31
5683937--5683974	12	3.2	12	88	0	58	60	0	2	36	1.11
5685028--5685086	29	2.0	29	83	9	75	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5685050--5685107	21	2.9	20	77	7	64	41	0	0	58	0.98
5686331--5686359	12	2.5	12	94	5	51	55	0	0	44	0.99
5693677--5693732	23	2.4	24	77	14	64	67	5	0	26	1.11
5694748--5694802	27	2.0	28	85	3	76	45	0	1	52	1.11
5694748--5694802	28	2.0	27	82	10	67	45	0	1	52	1.11
5694820--5694884	23	2.9	23	77	11	80	60	1	1	36	1.16
5696421--5696477	27	2.1	27	87	6	80	54	0	0	45	0.99
5696431--5696477	14	3.4	14	76	8	51	57	0	0	42	0.98
5707857--5707889	2	16.5	2	100	0	66	51	0	0	48	1.00
5716473--5716502	2	15.0	2	100	0	60	50	0	0	50	1.00
5748674--5748740	27	2.4	27	81	13	75	56	0	0	43	0.99
5748705--5748756	21	2.6	20	78	6	52	50	0	0	50	1.00
5749657--5749691	6	5.8	6	100	0	70	0	34	14	51	1.42
5755255--5755351	2	48.5	2	76	0	68	44	8	6	41	1.59
5755259--5755351	26	3.6	26	77	0	78	44	8	6	40	1.61
5764059--5764088	15	2.0	15	100	0	60	33	6	33	26	1.83
5765366--5765404	2	20.5	2	87	10	55	51	2	0	46	1.14
5765353--5765405	13	4.1	13	83	7	54	56	3	0	39	1.17
5766988--5767047	18	3.2	18	73	4	57	41	3	1	53	1.27
5767214--5767265	19	2.8	20	82	14	74	44	0	0	55	0.99
5767314--5767415	38	2.7	37	82	11	111	48	2	2	46	1.32
5767461--5767508	26	1.9	25	87	8	71	54	6	2	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5773321--5773381	25	2.4	25	83	8	79	47	3	1	47	1.28
5774164--5774200	18	2.0	19	89	5	58	37	0	0	62	0.96
5774167--5774215	17	2.9	18	73	14	59	42	0	0	57	0.99
5779842--5779876	3	11.7	3	100	0	70	31	0	0	68	0.90
5780261--5780308	23	2.0	23	84	15	62	56	2	2	39	1.23
5780982--5781015	13	2.4	14	90	9	52	64	0	2	32	1.08
5782089--5782121	3	11.0	3	100	0	66	66	0	0	33	0.92
5782120--5782174	3	19.7	3	75	14	55	30	0	1	67	1.01
5782115--5782173	11	5.2	11	81	4	55	33	0	1	64	1.04
5782180--5782214	10	3.4	10	84	7	52	37	0	0	62	0.95
5791053--5791083	2	15.5	2	100	0	62	51	0	0	48	1.00
5805657--5805707	2	25.5	2	87	0	75	47	5	0	47	1.26
5806112--5806136	2	12.5	2	100	0	50	52	0	0	48	1.00
5806137--5806169	16	2.1	16	100	0	66	24	12	39	24	1.89
5810729--5810767	18	2.2	18	95	0	69	20	25	15	38	1.92
5816408--5816432	3	8.3	3	100	0	50	68	0	0	32	0.90
5821791--5821823	14	2.3	15	89	5	50	27	0	0	72	0.85
5823097--5823139	19	2.3	19	83	0	59	25	0	0	74	0.82
5823313--5823352	19	2.0	20	86	13	57	52	0	0	47	1.00
5833340--5833581	121	2.0	121	95	0	439	26	9	19	45	1.80
5841617--5841675	27	2.2	28	84	6	77	33	10	3	52	1.52
5841795--5841853	26	2.3	26	87	0	91	37	10	3	49	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5842522--5842556	17	2.1	17	88	0	52	57	8	5	28	1.52
5849623--5849665	2	21.5	2	100	0	86	51	0	0	48	1.00
5849988--5850044	29	2.0	29	83	10	73	52	5	1	40	1.34
5850972--5851008	9	4.1	9	90	10	58	62	0	0	37	0.96
5850974--5851002	10	3.0	10	95	5	51	62	0	0	37	0.96
5860379--5860426	21	2.3	21	85	7	62	33	25	22	18	1.97
5860517--5860543	3	9.0	3	100	0	54	33	66	0	0	0.92
5867119--5867148	2	15.0	2	92	0	51	46	0	0	53	1.00
5867400--5867442	13	3.4	13	80	3	52	27	13	0	58	1.37
5876169--5876199	16	1.9	16	100	0	62	45	6	12	35	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125