genome.fa.s46.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  79  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15865311--15865376	20	3.2	21	81	12	75	39	16	13	30	1.87
15867528--15867571	20	2.3	19	88	7	70	52	29	0	18	1.46
15867534--15867578	20	2.2	20	88	0	63	51	33	0	15	1.44
15886765--15886815	21	2.4	21	100	0	102	39	11	15	33	1.84
15888252--15888292	12	3.5	12	77	16	50	12	4	0	82	0.81
15893020--15893053	3	11.3	3	100	0	68	35	0	32	32	1.58
15893052--15893090	3	13.0	3	100	0	78	66	0	0	33	0.92
15903086--15903135	21	2.4	21	96	0	91	50	10	8	32	1.65
15910407--15910463	24	2.4	23	88	5	87	36	17	29	15	1.91
15914166--15914226	7	8.6	7	78	8	52	75	3	3	18	1.08
15915168--15915220	22	2.4	22	83	0	70	32	22	11	33	1.90
15915201--15915380	96	1.9	96	90	0	288	36	13	12	37	1.84
15923264--15923364	51	2.0	52	88	5	152	26	19	9	43	1.82
15924111--15924145	12	2.9	12	84	16	54	85	0	5	8	0.73
15925989--15926177	67	2.9	63	76	10	155	41	8	12	36	1.75
15926160--15926203	21	2.2	20	84	12	54	47	4	0	47	1.22
15926012--15926190	67	2.7	65	77	9	166	44	9	9	36	1.70
15926080--15926213	65	2.1	63	79	12	139	47	7	5	38	1.56
15927374--15927426	26	2.1	26	82	6	65	39	16	5	37	1.73
15928623--15928674	25	2.1	25	85	0	68	32	25	15	26	1.95
15930621--15930724	36	2.8	37	76	4	113	27	26	10	34	1.90
15931778--15931808	14	2.2	14	94	0	53	41	19	6	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15938927--15939015	36	2.5	36	86	0	115	29	29	11	30	1.91
15943045--15943081	18	2.0	20	89	10	60	45	10	5	37	1.62
15943481--15943728	42	5.8	42	74	8	187	27	16	16	39	1.90
15943481--15943813	130	2.5	133	82	6	372	27	17	15	39	1.90
15943839--15944028	86	2.2	86	79	3	213	27	18	14	39	1.90
15951153--15951192	21	2.0	21	90	5	64	50	12	7	30	1.68
15952445--15952498	23	2.3	23	93	0	90	37	0	11	51	1.37
15952456--15952508	23	2.3	23	83	0	61	50	0	7	41	1.30
15952555--15952661	38	2.9	38	73	10	114	56	9	2	31	1.46
15952573--15952630	8	6.2	10	72	22	54	50	8	3	37	1.50
15952572--15952639	27	2.6	27	79	9	77	51	8	2	36	1.48
15953536--15953579	22	2.0	23	86	4	63	36	13	0	50	1.42
15957449--15957588	57	2.5	57	83	0	172	46	15	13	25	1.82
15966023--15966074	21	2.4	23	87	9	74	19	3	23	53	1.61
15966618--15966666	22	2.2	23	85	3	64	79	0	18	2	0.83
15966603--15966692	24	3.8	23	70	12	58	76	1	18	3	0.98
15966600--15966661	27	2.3	26	84	10	81	80	1	16	1	0.87
15966604--15966666	8	7.5	8	77	15	65	80	1	15	1	0.86
15967715--15967799	12	6.9	12	75	2	62	77	4	3	14	1.06
15968572--15968606	16	2.3	15	90	9	54	17	0	17	65	1.27
15969339--15969408	28	2.5	28	88	2	95	38	10	15	35	1.81
15969397--15969433	18	2.1	17	90	5	56	43	5	10	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15969485--15969550	18	3.7	18	71	4	71	43	19	10	25	1.83
15969467--15969561	35	2.7	36	79	8	115	40	16	13	29	1.87
15969549--15969587	16	2.4	16	91	0	60	46	15	10	28	1.78
15969542--15969648	33	3.2	34	77	2	119	42	14	10	32	1.80
15969833--15969894	21	2.9	22	70	4	63	43	17	9	29	1.81
15969833--15969989	22	7.0	22	67	7	91	38	15	8	36	1.79
15969911--15969978	23	3.0	23	73	16	68	36	14	8	39	1.78
15969833--15969989	46	3.5	45	81	4	174	38	15	8	36	1.79
15969875--15970029	46	3.4	43	78	8	123	38	14	8	38	1.76
15971191--15971248	21	2.8	21	78	17	66	6	13	0	79	0.93
15972427--15972512	44	2.0	44	83	0	109	31	12	16	39	1.86
15975294--15975325	3	11.0	3	93	6	57	68	0	0	31	0.90
15984186--15984260	22	3.4	21	81	15	80	48	4	0	48	1.20
15984625--15984679	19	3.0	18	78	17	60	63	0	5	30	1.17
15984625--15984682	17	3.1	19	80	7	66	63	0	5	31	1.16
15986489--15986531	20	2.2	20	86	0	59	13	11	2	72	1.22
15988937--15988969	14	2.3	15	89	5	50	36	6	3	54	1.41
15990965--15991014	24	2.1	24	85	7	66	54	6	18	22	1.65
15991158--15991201	22	2.0	22	90	0	70	43	6	11	38	1.67
15998494--15998528	16	2.2	16	94	0	61	42	5	14	37	1.69
16000726--16000770	23	1.9	24	86	4	65	55	13	4	26	1.57
16002859--16002891	17	1.9	17	93	0	57	54	12	9	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16005483--16005517	17	2.1	17	100	0	70	31	28	5	34	1.81
16007516--16007555	20	1.9	22	90	10	66	35	2	32	30	1.71
16011696--16011750	18	3.1	18	86	0	74	40	36	16	7	1.76
16013191--16013246	28	1.9	29	85	7	78	66	0	5	28	1.14
16013571--16013615	4	11.2	4	95	0	81	24	2	26	46	1.64
16014326--16014373	16	3.0	16	75	6	53	8	4	18	68	1.31
16014341--16014398	16	3.2	16	70	25	53	12	5	20	62	1.49
16019945--16020003	20	2.9	20	84	2	82	16	33	3	45	1.64
16020502--16020570	34	2.0	34	100	0	138	36	2	14	46	1.60
16020813--16020849	7	5.3	7	93	0	65	13	0	2	83	0.74
16020933--16020972	20	2.0	20	90	5	62	57	0	0	42	0.98
16025624--16025686	25	2.4	28	76	10	69	38	0	0	61	0.96
16025644--16025697	27	2.1	26	80	16	60	42	0	0	57	0.98
16028982--16029007	13	2.0	13	100	0	52	76	0	0	23	0.78
16035711--16035753	22	2.0	22	100	0	86	23	4	23	48	1.69
16040322--16040431	30	3.6	28	75	17	96	47	6	0	46	1.28
16040324--16040428	31	3.4	29	74	11	86	48	6	0	44	1.29
16040446--16040518	29	2.5	30	93	2	121	57	1	1	39	1.16
16040629--16040654	1	26.0	1	100	0	52	100	0	0	0	0.00
16044110--16044150	22	1.9	22	85	5	57	26	2	17	53	1.56
16051404--16051441	19	2.0	19	100	0	76	47	15	15	21	1.82
16054973--16055023	11	4.6	11	80	9	50	78	1	15	3	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16055051--16055090	13	3.2	12	86	10	53	87	0	10	2	0.63
16055060--16055089	10	2.9	10	95	5	51	90	0	10	0	0.47
16055058--16055090	14	2.4	14	94	0	57	90	0	9	0	0.44
16055514--16055587	35	2.1	35	84	0	94	35	14	8	41	1.76
16061489--16061523	12	2.9	12	86	0	52	34	0	34	31	1.58
16063723--16063755	3	11.0	3	93	0	57	63	0	3	33	1.10
16071245--16071413	55	3.1	55	78	3	180	28	14	11	46	1.78
16072710--16072766	30	1.9	30	92	0	96	59	12	12	15	1.61
16075675--16076065	194	2.0	195	94	1	696	35	18	10	35	1.85
16080645--16080728	23	3.5	23	82	9	98	23	8	3	64	1.37
16082511--16082553	22	2.0	22	81	4	52	23	2	11	62	1.40
16084291--16084518	125	1.8	123	83	5	298	35	10	17	35	1.86
16086605--16086644	20	2.0	20	100	0	80	60	5	15	20	1.53
16088966--16089025	31	2.0	30	86	3	84	56	3	8	31	1.45
16090557--16090623	29	2.2	30	84	5	91	50	13	8	26	1.71
16091838--16091922	32	2.5	33	86	7	109	52	10	16	20	1.72
16092097--16092189	33	2.7	34	80	3	98	55	12	12	18	1.68
16092141--16092261	35	3.4	34	74	10	109	52	9	18	19	1.72
16092315--16092756	35	12.6	35	68	12	165	51	10	17	20	1.75
16092315--16092756	70	6.3	69	72	9	216	51	10	17	20	1.75
16092357--16092754	141	2.8	141	75	8	328	51	10	17	20	1.74
16092498--16092790	104	2.8	104	75	9	274	52	11	17	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16093164--16093202	20	2.0	20	94	0	69	35	17	17	28	1.94
16093165--16093211	20	2.3	20	85	0	67	40	19	12	27	1.88
16093304--16093435	41	3.2	41	73	1	113	42	15	10	31	1.81
16093820--16093864	23	2.0	23	91	8	74	46	4	4	44	1.43
16095894--16095944	24	2.0	26	92	7	88	56	3	7	31	1.46
16102285--16102313	14	2.1	14	100	0	58	44	0	34	20	1.52
16105568--16105612	2	22.5	2	100	0	90	51	0	0	48	1.00
16105889--16105939	22	2.5	21	90	9	79	50	0	0	49	1.00
16105888--16105939	20	2.6	21	85	14	74	51	0	0	48	1.00
16105950--16105997	18	2.9	16	81	9	53	62	0	0	37	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125