genome.fa.s46.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  98  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18974975--18975212	109	2.2	110	87	3	329	36	17	21	24	1.94
18974714--18975241	241	2.2	242	82	5	670	37	17	20	24	1.94
18975175--18975245	22	3.2	22	89	2	97	26	18	25	29	1.98
18975184--18975261	22	3.5	22	87	6	95	30	19	23	26	1.98
18975072--18975395	155	2.1	154	80	6	361	35	16	21	26	1.94
18975336--18975389	22	2.5	21	81	6	72	27	12	27	31	1.93
18976029--18976059	15	2.1	15	93	0	53	41	9	25	22	1.84
18977989--18978106	33	3.6	33	77	12	100	20	2	34	42	1.66
18977934--18978109	16	11.2	16	69	15	93	20	1	31	46	1.61
18979236--18979265	15	2.0	15	93	0	51	6	3	16	73	1.18
18979441--18979474	11	3.1	11	86	0	50	14	8	50	26	1.72
18979598--18979657	3	20.7	3	80	13	72	33	0	0	66	0.92
18979894--18979977	30	2.8	30	82	7	107	50	3	9	36	1.53
18981718--18981742	2	12.5	2	100	0	50	48	0	0	52	1.00
18983393--18983434	15	2.9	14	86	10	50	76	2	4	16	1.07
18983303--18983456	82	1.9	80	86	2	218	65	7	7	18	1.43
18983587--18983655	22	3.3	20	78	11	68	39	7	2	50	1.45
18983610--18983668	19	2.8	21	75	15	59	37	6	8	47	1.61
18983598--18983952	22	16.4	22	70	13	146	35	9	5	49	1.59
18983727--18983951	65	3.5	66	79	9	212	37	10	5	46	1.62
18983813--18983969	22	7.2	22	70	9	79	35	8	7	49	1.61
18984227--18984278	22	2.4	22	86	0	68	40	11	1	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18984360--18984406	25	1.9	25	82	4	60	51	2	19	27	1.58
18987626--18987670	19	2.4	19	80	0	54	57	6	6	28	1.50
18989940--18989978	2	19.5	2	100	0	78	48	0	0	51	1.00
18994153--18994194	14	3.0	14	76	13	50	14	45	2	38	1.58
18994808--18994848	22	2.0	20	85	9	55	73	4	21	0	1.02
18994863--18994901	3	13.0	3	94	0	69	64	0	2	33	1.08
18995020--18995153	45	3.0	44	80	7	128	38	17	13	30	1.88
18995130--18995465	98	3.3	98	80	5	352	38	21	10	30	1.87
18995130--18995463	50	6.6	49	77	10	273	38	21	10	29	1.87
18999689--18999757	32	2.0	36	83	13	92	63	4	14	17	1.45
19005673--19005721	16	2.7	19	78	15	59	32	0	6	61	1.21
19005682--19005863	65	2.8	64	79	15	153	27	2	4	65	1.25
19005678--19005809	63	2.2	60	76	19	134	27	1	4	66	1.20
19006179--19006233	26	2.2	26	83	3	67	34	5	20	40	1.75
19006365--19006410	20	2.3	20	92	3	76	26	28	21	23	1.99
19006869--19007147	59	4.7	58	89	9	406	44	8	13	33	1.74
19006939--19007027	27	3.2	27	62	20	65	41	6	14	37	1.72
19010983--19011027	10	4.4	10	82	2	54	80	0	15	4	0.87
19012277--19012684	40	10.0	39	87	9	525	22	17	22	37	1.94
19012285--19012684	81	4.9	80	87	9	553	22	18	22	37	1.94
19012691--19012730	7	5.9	7	91	2	64	92	7	0	0	0.38
19012691--19012732	1	42.0	1	85	0	57	92	7	0	0	0.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19012691--19012730	21	1.9	21	100	0	80	92	7	0	0	0.38
19012935--19012983	16	2.7	19	78	15	59	32	0	6	61	1.21
19014012--19014290	56	4.9	56	89	6	436	44	8	12	34	1.73
19017487--19017526	20	2.0	20	85	5	53	0	5	22	72	1.04
19017968--19018018	17	3.0	16	83	11	66	82	1	13	1	0.85
19020020--19020060	21	2.0	21	90	4	66	39	7	17	36	1.77
19021874--19021916	13	3.2	13	78	18	52	41	0	0	58	0.98
19023009--19023041	3	11.0	3	100	0	66	33	0	0	66	0.92
19023257--19023290	18	1.9	18	88	5	52	50	0	11	38	1.39
19023431--19023460	2	15.0	2	100	0	60	50	0	0	50	1.00
19025617--19025654	19	2.1	19	85	5	51	39	0	2	57	1.12
19025627--19025718	47	2.0	46	81	12	107	40	1	1	57	1.13
19026907--19026953	21	2.2	22	81	11	53	57	2	0	40	1.11
19037073--19037111	20	2.0	20	85	10	53	53	12	15	17	1.72
19050645--19050688	2	22.0	2	95	0	79	52	0	0	47	1.00
19058351--19058559	106	2.0	106	95	0	373	42	13	14	28	1.85
19060069--19060106	15	2.5	15	91	0	58	52	7	2	36	1.45
19062186--19062216	16	1.9	16	93	0	53	64	12	3	19	1.41
19066796--19066900	52	2.0	52	90	3	167	43	8	20	26	1.81
19067394--19067469	31	2.5	31	88	0	116	26	19	27	26	1.99
19067482--19067565	25	3.4	25	80	3	98	45	3	28	22	1.69
19067493--19067585	49	1.9	47	82	8	116	44	5	25	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19067511--19067587	24	3.2	23	75	14	59	44	5	27	23	1.74
19067805--19067833	11	2.6	11	100	0	58	20	0	27	51	1.47
19067861--19067964	52	2.0	52	86	3	147	40	8	24	26	1.84
19068390--19068423	12	2.8	12	100	0	68	14	0	17	67	1.23
19068462--19068544	31	2.7	31	85	5	114	30	18	25	26	1.98
19068557--19068642	25	3.5	25	65	9	59	40	6	31	20	1.79
19071338--19071380	20	2.1	21	86	4	61	51	0	0	48	1.00
19072172--19072221	14	3.5	15	76	17	61	48	6	0	46	1.27
19077434--19077474	11	3.8	11	87	6	66	70	0	0	29	0.87
19077572--19077635	18	3.4	18	75	8	65	59	1	3	35	1.23
19077511--19077593	31	2.6	32	73	19	84	54	0	0	45	0.99
19077571--19077637	19	3.5	18	71	17	55	58	1	2	37	1.23
19077905--19077968	29	2.2	30	85	2	94	43	1	1	53	1.19
19077991--19078038	21	2.2	24	78	17	59	47	2	2	47	1.25
19078928--19079013	45	1.9	44	90	2	136	33	10	9	46	1.70
19078936--19079026	45	2.0	45	84	0	119	36	10	9	42	1.73
19079018--19079049	2	16.0	2	93	0	55	50	3	0	46	1.17
19079872--19080390	60	8.7	58	85	7	640	34	13	7	44	1.73
19080469--19080522	12	4.6	12	80	13	51	81	3	1	12	0.91
19080472--19080520	20	2.5	19	84	12	64	81	4	2	12	0.91
19080516--19080542	10	2.7	10	100	0	54	77	7	0	14	0.97
19080933--19080977	20	2.2	20	88	0	63	8	26	33	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19089220--19089992	156	4.9	160	94	2	1249	38	18	14	28	1.90
19089220--19090022	319	2.5	320	91	3	1280	39	17	14	28	1.89
19090004--19090099	15	6.5	15	77	18	55	80	7	2	10	0.99
19090054--19090099	18	2.6	18	96	0	83	89	4	0	6	0.60
19090049--19090086	1	38.0	1	91	0	58	94	2	0	2	0.35
19090037--19090086	23	2.2	23	96	0	91	90	4	0	6	0.57
19090427--19090472	19	2.3	20	88	3	67	23	19	32	23	1.97
19090496--19090536	19	2.1	19	86	4	55	17	24	34	24	1.96
19090525--19090594	31	2.3	31	87	7	106	25	24	24	25	2.00
19091026--19091059	3	11.7	3	93	6	61	70	0	0	29	0.87
19091361--19091488	1	128.0	1	78	0	121	2	0	9	88	0.61
19091352--19091485	8	16.9	8	82	13	154	2	0	9	87	0.65
19091495--19091943	41	11.0	41	89	5	642	35	24	17	23	1.95
19091495--19091937	246	1.8	245	91	3	728	35	24	17	23	1.95
19093134--19093206	7	10.0	7	80	15	60	2	12	1	83	0.82
19093197--19093230	15	2.4	14	85	9	50	8	17	0	73	1.08
19093607--19093647	1	41.0	1	100	0	82	0	0	0	100	0.00
19096884--19097662	157	4.9	157	95	2	1292	38	17	14	29	1.90
19097712--19097757	18	2.6	18	96	0	83	89	4	0	6	0.60
19097707--19097744	1	38.0	1	91	0	58	94	2	0	2	0.35
19097696--19097744	23	2.1	23	96	0	89	89	4	0	6	0.57
19098085--19098130	19	2.3	20	88	3	67	23	19	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19098184--19098253	31	2.3	31	87	7	106	25	24	24	25	2.00
19098752--19098787	17	2.1	18	89	5	56	55	11	2	30	1.49
19103956--19103995	20	2.0	20	90	5	62	57	0	0	42	0.98
19104282--19104319	12	2.9	14	76	15	53	34	5	5	55	1.45
19104880--19104964	30	2.8	30	80	0	89	45	7	10	36	1.66
19107321--19107513	64	3.1	61	75	6	165	39	12	15	32	1.85
19109238--19109286	21	2.3	21	79	6	55	32	8	14	44	1.74
19112683--19113771	160	6.8	159	79	5	932	33	10	14	42	1.79
19113457--19113753	153	2.0	150	85	2	405	33	11	13	42	1.79
19115176--19115272	34	2.8	33	70	16	90	41	11	6	41	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125