genome.fa.s46.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  124  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22519961--22523088	180	17.5	180	75	8	2065	40	7	9	41	1.66
22520139--22521711	181	8.8	176	73	10	466	41	8	9	41	1.67
22521671--22522710	533	2.0	516	80	6	1156	41	6	9	42	1.64
22527739--22527763	12	2.1	12	100	0	50	44	8	24	24	1.80
22531489--22531531	7	5.9	7	89	10	68	86	0	0	13	0.58
22531490--22531525	16	2.2	16	100	0	72	88	0	0	11	0.50
22531489--22531540	23	2.2	24	93	3	88	84	0	3	11	0.74
22531559--22532156	59	10.3	59	85	4	797	34	12	7	45	1.71
22531953--22532048	26	3.2	32	63	19	80	34	11	6	47	1.65
22532075--22532235	79	2.0	79	86	4	227	32	11	11	44	1.77
22532018--22532292	136	2.0	136	86	5	378	33	12	9	44	1.74
22532154--22532317	57	2.8	58	91	3	260	33	13	7	45	1.71
22531967--22532317	195	1.8	193	88	6	548	34	12	8	45	1.72
22532332--22532407	22	3.6	20	72	22	66	77	2	7	11	1.08
22532334--22532382	26	2.0	24	84	8	62	73	2	12	12	1.18
22532336--22532414	11	6.8	11	73	19	54	77	2	7	12	1.08
22532363--22532414	17	3.1	17	82	0	59	80	1	5	11	0.96
22533439--22533548	6	19.0	6	74	12	97	79	2	1	16	0.94
22533465--22533548	11	7.4	11	77	19	50	79	3	1	15	0.92
22533463--22533542	24	3.5	22	86	11	108	78	3	1	16	0.95
22533439--22533542	46	2.3	45	83	12	124	78	2	1	16	0.95
22533442--22533562	52	2.4	50	82	10	156	79	2	3	14	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22533439--22533545	23	4.7	23	83	11	105	78	2	1	16	0.96
22533442--22533549	17	6.3	16	73	26	80	78	2	1	16	0.95
22533756--22534079	39	8.1	40	76	13	260	36	21	16	25	1.94
22533833--22534063	77	3.0	78	79	8	267	35	21	16	25	1.95
22535096--22535138	15	2.9	15	92	0	68	6	13	0	79	0.93
22535104--22535139	8	4.6	8	93	6	65	8	11	0	80	0.90
22543717--22543965	59	4.3	56	82	6	268	34	11	8	45	1.70
22543928--22544000	35	2.1	35	97	0	137	31	8	15	45	1.75
22543880--22544059	94	1.9	94	89	4	283	32	11	10	46	1.74
22543821--22544117	153	2.0	151	81	5	357	34	11	8	46	1.70
22543963--22544141	59	3.1	59	85	4	247	33	12	8	45	1.73
22543752--22544141	212	1.9	208	88	5	588	33	11	8	46	1.70
22544183--22544231	11	4.6	10	80	10	53	79	2	4	14	0.97
22544201--22544239	17	2.3	17	81	0	51	76	2	7	12	1.09
22544281--22544306	4	6.5	4	100	0	52	53	0	0	46	1.00
22545315--22545432	6	20.2	6	76	14	86	77	1	2	18	0.98
22545360--22545432	29	2.5	28	80	12	78	80	1	4	13	0.92
22545836--22546265	176	2.4	179	77	6	426	41	10	9	38	1.73
22545498--22549635	181	23.1	181	75	8	2847	40	9	8	40	1.69
22545498--22549634	718	5.8	715	76	7	3064	40	9	8	40	1.69
22550524--22550559	16	2.1	17	90	10	56	41	5	8	44	1.58
22550156--22551251	181	6.1	180	78	6	1044	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22550167--22551204	537	1.9	538	84	4	1391	41	9	8	40	1.68
22550946--22551566	324	1.9	324	83	4	797	42	9	8	40	1.68
22551270--22552478	180	6.8	179	75	12	925	42	10	8	39	1.69
22551723--22552492	183	4.3	180	76	9	650	41	10	8	39	1.70
22552490--22554016	359	4.2	359	78	6	1378	43	10	7	38	1.68
22552490--22554141	181	9.2	180	77	5	1313	42	10	7	39	1.67
22552767--22554037	539	2.4	538	79	7	1378	42	9	7	39	1.67
22556422--22556451	15	2.0	15	93	0	51	43	6	0	50	1.28
22556493--22556556	24	2.6	24	87	7	85	81	7	1	9	0.94
22556520--22556568	25	2.0	25	87	0	71	81	8	4	6	0.97
22559358--22559891	43	12.6	43	77	7	276	41	20	14	23	1.89
22559447--22559862	41	10.0	41	78	8	338	39	20	15	24	1.91
22559551--22559881	122	2.7	122	84	7	382	38	20	15	25	1.92
22559456--22559970	41	12.3	41	73	12	185	40	20	14	24	1.90
22559813--22559982	42	4.1	41	78	8	141	42	20	12	24	1.87
22559813--22559982	40	4.1	41	78	8	150	42	20	12	24	1.87
22560333--22560385	21	2.5	22	90	6	76	35	13	9	41	1.76
22560596--22560645	21	2.4	21	79	0	55	40	6	6	48	1.52
22561049--22561172	63	2.0	63	88	3	187	31	25	7	36	1.83
22561863--22561898	8	4.6	8	89	3	56	8	13	0	77	0.98
22561863--22561909	16	2.9	16	87	3	58	8	12	2	76	1.09
22568596--22568646	15	3.5	15	74	12	52	76	3	1	17	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22568614--22568656	22	2.0	22	81	9	52	72	4	2	20	1.14
22578532--22581208	181	15.0	180	76	7	1984	41	9	7	40	1.66
22578025--22581161	541	5.9	538	77	7	2365	41	9	7	40	1.66
22578025--22581161	360	8.8	359	75	9	2097	41	9	7	40	1.66
22581429--22581859	181	2.4	181	78	5	433	42	8	9	39	1.67
22581780--22582205	161	2.6	161	80	4	478	42	10	8	38	1.69
22581719--22582205	169	2.9	164	78	6	520	41	10	8	40	1.68
22581411--22582634	342	3.5	344	76	11	894	41	9	8	39	1.70
22582052--22584886	181	15.8	178	74	8	1320	41	9	8	40	1.68
22582679--22587080	181	24.1	181	70	11	1777	42	9	7	39	1.67
22587565--22588224	199	3.3	200	78	4	550	42	11	11	33	1.78
22588458--22588487	15	2.0	15	93	0	51	16	0	40	43	1.48
22588804--22590711	180	10.6	181	77	6	1422	40	9	9	41	1.69
22588804--22590711	357	5.3	358	76	8	1430	40	9	9	41	1.69
22589006--22590445	537	2.7	534	77	7	1198	40	9	9	40	1.71
22590926--22591259	179	1.9	178	83	5	442	41	9	8	39	1.68
22591265--22597544	181	34.7	178	74	9	3992	41	9	9	39	1.70
22591265--22597441	721	8.5	699	72	12	2733	41	9	9	39	1.70
22596727--22597533	177	4.5	176	74	11	465	42	9	8	40	1.67
22596754--22597487	178	4.1	178	75	9	417	42	9	8	39	1.68
22597696--22601336	181	20.2	181	75	7	2501	42	10	8	39	1.68
22597748--22601238	540	6.5	535	74	8	2159	42	10	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22597731--22599985	721	3.1	718	77	7	1778	42	10	7	39	1.68
22597731--22601336	361	10.0	351	73	8	2040	42	10	8	39	1.68
22603222--22604077	181	4.8	174	74	8	537	38	8	11	42	1.71
22604082--22606472	181	13.3	181	76	8	1694	40	8	9	41	1.69
22605167--22605220	18	3.1	18	82	12	60	46	7	12	33	1.70
22604448--22606429	537	3.7	534	77	7	1597	40	8	9	41	1.68
22606492--22607687	181	6.7	179	77	5	912	40	8	10	40	1.70
22606498--22609554	362	8.6	355	72	9	1160	40	8	10	41	1.70
22607757--22609554	181	10.0	180	74	5	1171	40	8	9	41	1.69
22608930--22609257	179	1.9	174	78	7	365	39	9	8	41	1.69
22609214--22609608	181	2.2	180	78	5	393	39	9	8	42	1.69
22610716--22615476	181	26.6	180	75	7	2645	41	9	8	40	1.68
22611284--22611337	18	3.1	18	84	10	67	37	5	9	48	1.59
22611284--22611330	17	2.7	18	83	12	62	40	4	10	44	1.59
22610727--22615476	539	8.8	534	75	9	3108	41	9	8	40	1.68
22610716--22616138	360	15.0	357	73	10	3071	41	9	8	40	1.68
22614562--22615302	359	2.1	360	79	4	798	43	9	9	38	1.69
22615518--22616137	176	3.5	177	77	9	598	42	8	6	42	1.62
22616255--22619075	182	15.7	179	70	13	1005	41	8	9	41	1.66
22616703--22617031	181	1.8	181	82	5	421	39	7	10	42	1.67
22616255--22617751	179	8.4	178	72	10	505	40	7	9	41	1.66
22616721--22617878	175	6.5	176	73	12	522	41	7	9	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22617888--22617925	18	2.2	18	86	13	53	47	2	5	44	1.39
22618045--22618101	27	2.1	27	100	0	114	43	5	7	43	1.54
22618758--22619383	315	2.0	315	82	7	753	42	8	9	39	1.69
22619076--22620160	180	6.1	179	75	8	736	40	8	10	40	1.71
22620651--22620691	19	2.0	20	86	13	57	48	14	12	24	1.78
22620227--22627617	181	41.2	180	74	8	4800	40	8	9	41	1.69
22620300--22626870	360	18.4	360	72	11	1193	40	8	9	41	1.68
22622919--22622949	16	1.9	16	93	0	53	22	9	0	67	1.19
22619103--22626851	716	10.9	710	73	11	2848	40	8	9	41	1.68
22627496--22627730	116	2.1	115	83	4	296	39	7	11	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125